Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0127000 | OGI:10005900 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:1711433-1715037 | ||||||||
| Gene Symbol | OsFbox515, Os_F0086, OsFbox517, Os_F0054, Os_F0742, - | ||||||||||
| DNA seq | GAAAACGAAACTGAAGAGACTCGACAAAAATAGTTGATGAATGGAAAGAAATTCTGTTGTACAAGGGATAAATAGGTTCTTGGTTGAACAACTGCTAATGTAACCAGAGATTAGGAGTAGAATGACACATTACTCGATTTGTTCAGTTGAAAACTAGCAAGTTATTGGATGCCATTCCTAGAGACCAGCAAAAATGCAGGAGACCTTAAAACTCTACTGTAACCAGTGAATGTAGCAGAAAGCGAGTTGATTCTTCAATGGGATGACAAACAAATGCATGATCCTTTGGCATTTCATCTCTCCTCATACCGAATAAATGCAGGTAACTCGTCCTTGTATTGGCCCCAGTGTTTGATATCAAACTGAACAGAGGCCATGCCATTACTAGCAAAGAAATCTTCCACACTGATGACCTGGGGATCATCCTCCAAGCATTTGACTTCAACAATCTTAAGGTGCTCACACGTAAATGATCTTTCCATAAGCTCGCCAACAATTCTTGGAGATTTATCTGCAATGCACTGTAGCACGACAAACAGTAAGTTATTTCCCAATGCACAACCTCTTGTGCAAAAAGAAACAATCGAGCAGGATCAGTATACATCTGAGGAAAGCAATTACCTTCGCAAGATTCAGAGTTAACTTCTCTAGTCTCGGTGAGTTCTGAAGGAAGACAATTAGTGCATAGAAGTTTGCATCCAGGCACCACTGACCAAGAGTCAGGTTGACAACATCGATGAATTCTGGGCACCATTGCAAATTGTTTTCGAATGTCAGCTGCAAAAGATTCAAACGATTATACACCACACTTCCTCAATCACAAAACTTACCAACTAAATTGAGAGCTTCAAGATAATGGATGGCAAAAGATCACAGGAGAAAATGAACTGATGTCAACAAAAGACCAAAATAAAAAATGTTCTACTTGTTTGTTTTCACCGAGAATCTCTCGAGCACATGCGAACTCACTGTCAGGATGGTTTCCATGGAAGTCCAAAACCAGTAAAAAAACAACACAAATATATCATCAGGAAGCAGTAGGAGTGAGACATTCAACAATTCCCGGGAAGAATTTTCTGTTTGTATGTTGCCTTTTAATGTCTCCTAACATTAAAATTATGCTAGCATAATGTCTGTGTATTGTAACACCCAACACATTACACATCCCAACTAAATATACTATCTAAAATATAAAATGCAATATACAATTAATCCTGAAATCTAAAAATTACATGAAAGATTGGACAAGAGAAAATGACTGCCTATACAAATCAATACTTTTCTTTCACTATCCTACAAATAGCATGCACACGTATTTGCAGCCACAAAAAATCTGGACTTGGGGCAGGTGTAGAACATACAATCACCAATAAACCTCTCTTTCAAAAAGTACAACTAAAGTAAAATAGTCTATCAGATATTGGATAAGATGCATTTTTGGTTGACAACCCTGATATTGCATCTAGACTGACATGTAAAGTCCTCACATGAGAAATGATCATGTTTCATTTTTTAGATCAAACTTCCAAATAAAAAACTTCAGGGCTAGTTGATTAATGCACAAATGACCAGAGTACATGAACTAGATTGCATCAAATGTTGATAACATCCGTCATATTATCAATACATCATGGTTTCACAACATATGAATTAGCTCTGCGATGTTAGTTTTACAGGTTCAGGCTACTAAACTTATGCAATTATGAAATGACAAGAAGAAAAGCTTAAGTTTCAGTTTTTTCATATTGATAACTAAATCAAGGTGGGTGGATACACTAAGTAATACAAATAACCATACCTCTGTACCCTCATAATTGAACTCCAAGTTTGTAACACCAGAAAGGCTCCAGAGACACTGGCGGAGATCATTAGCATCAAAACCATAACTGAATATGAATGTATTAAATTTAACTGATACTGATGCGGTCGTTAGTAATTCCATGTCCTTTAGCATAGGTGTGGAATCCTCAATAGACAAGGTCAGAGAAGTAACACTTGGAATAGAAATAGATGCCTTGTTAGCCATGGAGAATTCAGTGCCGTCGATGGTCAAAACCTTCAGTGACTGGGACAAGATCTCCTCATCCGCAATGATGCAATCATGTAAGAAGAGTTCTTCCAATGCTGGACAGCCGGTGTCAAGTTGCTTGAAGAAACCTTGGTGTAAAGAAACACAGGAGAACCCAATTTTTCTCAGGTAGCATGAAGTGAACACTGAGTGATCGAGCTCCAATGGAAAGGCGAACACGACAACCTCGATAACCCTGGCCTGCTTCTGCAAAGCATGGCTAATCCACCTGTTGGCATCTACATTGGAATCCTTGTATTCATTGTACCCGTCCCATATTATGTAGCTGAGCCAGAATGTGTCTATCATAGCGGTGGGATCGCGGAGCTCCAACATTTGGTTAACGAACCTCTTGAATGCCACCTCGTCATTGTAGTCCTCATCGTCCCCTTGGTAAGCAATGAAATCAAACTCATCGAAGTCGGCATTGATGCAGGGCATGGTGCGCCAGAGATTGCGCCACCGCCGGGACAGCACGCACGTCTGCACAGCCTGGCGCGTGTTCAGGAAGGACATGATGTGGTGGAGGATTTTGTCGGGGAGGCCACTGATCCGGTCCATTCGGGCAGCGCGCACATGGGCCTTGACCCGCCTGAGCTTGTGCCTCCCAGGACGCCTATCCATGGTGGCCGATACCGAAGAGGCGTTTCGTCGAACAGGAGGTGCACGTGGAAACTGCACAAGAGCGGAAGACCAAAAGAAGCCATGAATTCATACGAATCAACAGCGCAAGTAAGCAAGAACTGAGATCGCAGTGCAAGCAACGATTCGCGAGCAGAATCTACCGGTGAAGAACTCCCAGTCAGTGGCGCAGCTAGGAATTTTTTCTTGGGTAGTGCTAGTTCACACGTTCATGTCACATGCTAAAATTTTCTTGTACCATAAAGCCGATATACAAATACAAATTTAGTGAAAATGCGATAAAAATAATGTCTTACAGCATCTGTAGGAACTTGTCGTGGTTCTTCTTCAGGTACAGGAGCTTCATCACCAATGAATACATTCGAAGAACTAGAAGATTCTGGAATCTCCATTGTTTTTGCTTCATGGTTCCCAAATAATGACGCAATATCTCCGCTCCTCTTCATGTTTTACCAATCCTACAAACAATAGCACACATTCACTAATCAGTAACAACTTATAAATTGCATATTCAGTTATTCTTATTCACAAATTCACTGATCTCTAATCACACATCGATTTAGGCAGCCGTTCTAGTGTTTTGTTGATCTGTTCGTTACCTGGGCTGAATGGTGGAGCGCCGGATCAGTGGAGACGTGGAGCAGCCAAGCAAGAGAACTGGAGAAGGCGGGCGGGCAAGCCGCGCCAAGCCACCAAGCCGGCAACCCGCAACCGGCGAGGCGGCGAGGAGGACTGGAGGAATCGCTGTCGCAGCGTCGCGGCCCCCGGCTTGGCGGCTTGGACGGTGGGGACGGCGCGGACGACGGCGGGGACGGCGCGGCGCCGGCGTGGACGACAATGGCGGCGTGGTCGCGTGGAGCAGCGCCTGGTGGTGGTGGGCTGGACTCCCTCCAAC
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| CDS seq | AGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGA
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| Protein seq | SYGFDANDLRQCLWSLSGVTNLEFNYEGTELTFENNLQWCPEFIDVVNLTLGQWCLDANFYALIVFLQNSPRLEKLTLNLAKCIADKSPRIVGELMERSFTCEHLKIVEVKCLEDDPQVISVEDFFASNGMASVQFDIKHWGQYKDELPAFIRYEER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0127000 | OsNip_10t0127000-01 | Chr10 | 1711433 | 1713322 | - | RAP2018-11-26 | ||
| CDS seq | AGTTATGGTTTTGATGCTAATGATCTCCGCCAGTGTCTCTGGAGCCTTTCTGGTGTTACAAACTTGGAGTTCAATTATGAGGGTACAGAGCTGACATTCGAAAACAATTTGCAATGGTGCCCAGAATTCATCGATGTTGTCAACCTGACTCTTGGTCAGTGGTGCCTGGATGCAAACTTCTATGCACTAATTGTCTTCCTTCAGAACTCACCGAGACTAGAGAAGTTAACTCTGAATCTTGCGAAGTGCATTGCAGATAAATCTCCAAGAATTGTTGGCGAGCTTATGGAAAGATCATTTACGTGTGAGCACCTTAAGATTGTTGAAGTCAAATGCTTGGAGGATGATCCCCAGGTCATCAGTGTGGAAGATTTCTTTGCTAGTAATGGCATGGCCTCTGTTCAGTTTGATATCAAACACTGGGGCCAATACAAGGACGAGTTACCTGCATTTATTCGGTATGAGGAGAGATGA
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| Protein seq | SYGFDANDLRQCLWSLSGVTNLEFNYEGTELTFENNLQWCPEFIDVVNLTLGQWCLDANFYALIVFLQNSPRLEKLTLNLAKCIADKSPRIVGELMERSFTCEHLKIVEVKCLEDDPQVISVEDFFASNGMASVQFDIKHWGQYKDELPAFIRYEER |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0127000 | OsNip_10t0127000-02 | Chr10 | 1711452 | 1715037 | - | IsoSeq | ||
| CDS seq | GTTGGAGGGAGTCCAGCCCACCACCACCAGGCGCTGCTCCACGCGACCACGCCGCCATTGTCGTCCACGCCGGCGCCGCGCCGTCCCCGCCGTCGTCCGCGCCGTCCCCACCGTCCAAGCCGCCAAGCCGGGGGCCGCGACGCTGCGACAGCGATTCCTCCAGTCCTCCTCGCCGCCTCGCCGGTTGCGGGTTGCCGGCTTGGTGGCTTGGCGCGGCTTGCCCGCCCGCCTTCTCCAGTTCTCTTGCTTGGCTGCTCCACGTCTCCACTGATCCGGCGCTCCACCATTCAGCCCAGGATTGGTAAA
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| Protein seq | VGGSPAHHHQALLHATTPPLSSTPAPRRPRRRPRRPHRPSRQAGGRDAATAIPPVLLAASPVAGCRLGGLARLARPPSPVLLLGCSTSPLIRRSTIQPRIGK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.837057 | 0.604194 | 1.839073 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0127900 | RBH | 0.131817 | 0.611922 | 0.323249 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g03780 | RBH | 0.245913 | 0.266052 | 0.214727 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0127000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001320 | RBH | 0.033080 | 2.588777 | 0.220496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001290 | SBH | 0.346493 | 0.000000 | 0.536902 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001220 | SBH | 0.017392 | 0.009777 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001250 | RBH | 0.182822 | 1.198121 | 1.104233 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031400 | SBH | 1.424151 | 4.3369695 | 2.2020065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001420 | SBH | 0.049247 | 0.031967 | 0.160748 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0035800 | RBH | 0.4959275 | 2.2774665 | 3.426845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001260 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | RBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001330 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001310 | RBH | 0.036041 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001190 | RBH | 0.415554 | 0.0 | 0.000000 |
