Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0003490 | OGI:10005900 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:4746780-4751130 | ||||||||
| Gene Symbol | OsFbox515, Os_F0086, OsFbox517, Os_F0054, - | ||||||||||
| DNA seq | atccccgcactgcaatctatcaccacctcctccgcacggcatcgcgccgccactctcaccgtctgtgcgatctcgtcaccagcaagagccgcatctcaccgccgccgggagatctcgtcggccgccgcccttcccctcacgctcactgtggccgtctcctagcctcccccgccatccctctccgcgcctgcgccctcaccgcagctctctgggcggacggagtaagtaggtcatcgtcgcgttgagcacctcccgccacgctcgcggattcctccgtcccgtccaccaccgtcagtgtatgtaggcagcggcgcagggccgggccggctggaacgcctgctaacgcgcgtccaccgccttgccatttgtcactgcgtggcgcacggccggcgccgatgggcgaaccaacgccccaacgcccttctgttctgtactacttgcgaaccaacgccgccgcggccgccgggtcatccagtaagtccatcgaattaattccttctcttgcaaatttacttattacaatgtgttaatttcttgttgatagatttcctaggatgggacgtttgcaattttggtgtttctcgtggcactagtcttccacggggaactatgtcaaaagttgagaaacttccatcacaagccaggtgcgtgccattactgaattttagtgatagcaacaggatccgttcaattgttcatctagagaaacagcttcttttgacgggaactatattataaacagaaatatcaatgctatcagatgctgaagctgcaaaatctatagaaaaatatacttgttttcaaataaattaaatccccctgaaacttctgttatatgcagcacggcgcatgattaattatcgtcatcatagcctcagtcttggcatgtcattattaattataaggtagtcattggcacggcattaatctggcaaaagtgaggaatagaagaagcgataaccatgatgtagctctatatttttaccagagtcaatgatattcaaggtttgttttgttttgcaatgtcatcaactgtctcttttggttgtctttgttttcgtccaatggctttcttgcacatggaagccgtggccattcccatcaaatgtgattcctgaatggctgataagtgtgtggtgtggatatatgtgaccatttgcttaattatgagcaggtagatatattatgtatacaaggttggatcaatacatgcatccaaatgagtcttccctttgggacttcaataagttattttgcaagtggatttctcagttaccctgtaacctgagatgtccttgaaaatcctagaaaattggctaggtttctatatgattcttttatctgatgtaatatcactcacctggcatctactacttccctaacaagtttgctcacccctccttctttcaaatactgggttatcgatggtccataaaaaggtgatgggaccaaaattcaattgtacagctataagggaatgtgttgtctgatttagccttattggttgtcatacttctctaattttacaggattattcacatatttataatttagagtttggacatatgcacattatttttttattgtttttaaactaagcatctggaagttatatatggtcaattcaatttccaaaagtttggccatattttgttcgaaatgtcaaatatttattgactggggggactggttgagagaaatataattattcttcaaataaggatggccaattatttggtagatggcagatccacatattctatttgttgttattttggacgcaagtgaaaggtacttatatatataattttataatgactactttgggcagtatgagagattattgaacaattgttgagcacactacaggaacatgtagttccgttacctaaatttttagtaatactttctgaaatatcataacatttctcattatgtaactctttccaagcagcaaaattaaattaaaaaggaataggccaattggagccaagaatagaccgattggagtcatttatcttcaacagaaattaatatataaagaacaaatgtaccgcataagtgaaaaatgctccttatatatacttgcgaggaatgaatggtgatgtatgatggcttcttgaatcttgactcttggttttcccattccgcagctttcccacgcacaccacctgttcgacgaaaggcctctgcatgctcggccaccatcaccgtagccctagctgacgtccaaggcactgtcaagctcagcgacctccccggccatatcatcctccgcatcatgtccttcgtgagcatgtgccaggccaggcatgcatgcgtgctgtgctgtcaaatctccggcgttccgtgccctgcatgaacatcgacttcgacgtgttcaatgtgaccgttaccaagaaccaagcagggtatcaggcgcggtttgagagatttgtcaaccagctgctggaactccccaacctttctgactcgatggtcatgttctgtcttgggtactctttgttgggcggcgaagattgcaaagcttacttggcagacgcgcacaggtggatcagacagacggacacgctctggagaatcgggcaatgctttctatgcactggagcttgatcattctgtgtttacttcatgctaattgagaaacatcagtttcaccaatgttttttctggataagggtttcttcaagcgtattaagacgggttgtcctgcattggaagatctcctcctacatgattgcatcattatggatgatgagatctctttttccaagacactgcagattctgaccagtcatgaagaagtgccacctggactacaagacttctatttctactccttagtgttacttctctgaccttgtgttgtcctttggatagcttacctgtgctaaaaggacatgaaatcagtagtaacactgtgtaacagcatcagttgtacttgatgaaagttcaaattatgatattgatgctagtgatttctgccactattcctggagcctttctggtgttaaacatttggagtttgattatctggcaggaaaggtatgtttattgatcttacatattcccccttagtgtatgcaggaccttaattcatacatcttcatattccccccttgacactccacgatttacataagattagttacttgtacacacaaaactaattgttccataactaattcttatgccatgaaaccatgatgtgcaaataggataactagtgctaccaaccacttggtgcaatctagttcatgcgcccctttcatttgtacaaaaaacaatctgttggttagttgacctgaagtatcttagtttggcaggtagttcgatctcacagaaactggagcatttccaatttgatgacactatattttctagtgtactgtagcagctgaaaatgtatctcagactgactaagttcagatcattatacatactcttatctttctttttgaaagagggttttggtggtgatggtaggctcaaccattccctcacaagatctttgtgggtgtaaatatgtaagcgttagtattgtttttaagatcaggaaaagttttctataatatggcatgagttttttgtagcctcctgataatttatacctggtgcagataaaaatcaaagacaatatgcaatgttgtccggaattcatcaatcttgtaaacctgtcactaggttgatgatgtcttcctgcagaactttccggaactggagaagctgactctagaaataaaaaaggtacaagtttttaccacatgtatactgaaatcttaattgtatggaagtttttgagtgtgtgtattttatcagtacaaaacttactttccctgctataggagtatactcaaaaatatcaaaggcgagcttaaagaaagatcatttacctgtgagaaccttaagattgtcgaggtcacatgcttggaggaagatcccctggtcaaccgccaggaaaatttctttttcaatagtggcattacctctctaaagattaatatcacattctggaactacaactgaccttacaaatctgaggttttcagtgaagatcacaagcgtccaaggatcaggcgttaacatgcattgtcatcattcaatcactctgtgggggtgacttagataaatttcatctaaccaaatttggaggcaatgaggcacatgggtatgtttactgcgcttgttattggttctatggctagggagatttcatctaaccgtctgcgctgctgatcgatgcttgtgctgacaatctgacttagtggattgattacttgtttggaaaattttgcactgtcacagagtggatcacatttttggaaaatttcgctgcaaagagcttgatcgc
More
|
||||||||||
| CDS seq | atgttttttctggataagggtttcttcaagcgtattaagacgggttgtcctgcattggaagatctcctcctacatgattgcatcattatggatgatgagatctctttttccaagacactgcagattctgaccagtcatgaagaagtgccacctggactacaagacttctatttctactccttagtgagtatactcaaaaatatcaaaggcgagcttaaagaaagatcatttacctgtgagaaccttaagattgtcgaggtcacatgcttggaggaagatcccctggtcaaccgccaggaaaatttctttttcaatagtggcattacctctctaaagattaatatcacattctggaactacaactga |
||||||||||
| Protein seq | MFFLDKGFFKRIKTGCPALEDLLLHDCIIMDDEISFSKTLQILTSHEEVPPGLQDFYFYSLVSILKNIKGELKERSFTCENLKIVEVTCLEEDPLVNRQENFFFNSGITSLKINITFWNYN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0003490 | OsLima_10g0003490.01 | Chr10 | 4746780 | 4751130 | + | NAM | ||
| CDS seq | atgggcgaaccaacgccccaacgcccttctgttctgtactacttgcgaaccaacgccgccgcggccgccgggtcatccaatttcctaggatgggacgtttgcaattttggtgtttctcgtggcactagtcttccacggggaactatgtcaaaagttgagaaacttccatcacaagccagctttcccacgcacaccacctgttcgacgaaaggcctctgcatgctcggccaccatcaccgtagccctagctga
More
|
|||||||
| Protein seq | MGEPTPQRPSVLYYLRTNAAAAAGSSNFLGWDVCNFGVSRGTSLPRGTMSKVEKLPSQASFPTHTTCSTKGLCMLGHHHRSPS |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0003490 | OsLima_10g0003490.02 | Chr10 | 4749440 | 4751130 | + | NAM | ||
| CDS seq | atgttttttctggataagggtttcttcaagcgtattaagacgggttgtcctgcattggaagatctcctcctacatgattgcatcattatggatgatgagatctctttttccaagacactgcagattctgaccagtcatgaagaagtgccacctggactacaagacttctatttctactccttagtgagtatactcaaaaatatcaaaggcgagcttaaagaaagatcatttacctgtgagaaccttaagattgtcgaggtcacatgcttggaggaagatcccctggtcaaccgccaggaaaatttctttttcaatagtggcattacctctctaaagattaatatcacattctggaactacaactga
More
|
|||||||
| Protein seq | MFFLDKGFFKRIKTGCPALEDLLLHDCIIMDDEISFSKTLQILTSHEEVPPGLQDFYFYSLVSILKNIKGELKERSFTCENLKIVEVTCLEEDPLVNRQENFFFNSGITSLKINITFWNYN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.057889 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0128200 | SBH | 0.0 | 0.0 | 0.402100 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0128200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001320 | RBH | 0.033080 | 2.588777 | 0.220496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001320 | SBH | 0.0 | 0.000000 | 0.258965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001290 | RBH | 0.346493 | 0.000000 | 0.536902 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001220 | RBH | 0.017392 | 0.009777 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003530 | RBH | 2.942142 | 8.098986 | 4.598973 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0031800 | SBH | 0.394214 | 1.1757945 | 0.7663015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0003670 | RBH | 0.019392 | 0.0 | 0.746464 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0067100 | RBH | 0.0082115 | 0.9800175 | 0.0360775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001270 | SBH | 0.012983 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001350 | SBH | 0.214049 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001340 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001220 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003740 | RBH | 0.062828 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003620 | RBH | 0.000000 | 1.136633 | 1.490405 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001260 | SBH | 0.0 | 3.873414 | 1.278980 |
