Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G008510 | OGI:07055520 | 12/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:15519402-15523324 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATCCTTGGCGTTCATTGCATCATTAGTAATTAGTGGTCTTTTCCACAATGCGCTCGCAAACAAATTATGAGCATACCAATATGAGATTGCAACTCAAATAGAGAAATCAAATTTAAGATCAAAAACTAATAACAACAATGATTTCTCAGTCACAGGACAAAACTATAATCAACAAGAATGACATGATGCTACTGTAAAGTGCAATTTGTTTTCATCCTCCAGCATATGATGATCACACAATCACAAGTGTCTATATTGCACTTTGTACAAAATCTTGACAGTATAGCTTCCAGTTCTTATTGGTGGTATGTTGCATTTGCAAGCCATGTGAAGAAAACCATACAGCGAAAATAATATGCTTCACCTGCAAGACACGAATTCAAGTAGGATGTTCAGATAGCCTGTAATACAAGTGCAACATACGAATTCATTTGAAATAGACAGGCTATCTGCAAATACAAGTGCAGATCTGCACATCTAGTTGCACATCTGTATTAAATTTACAAGTCAAATGAGGCATCTGCACAAATTATAACTGTCCATAAAAGTTCTAAGGGAAAGAAACAAATGAGCATAATATGCCAATATGCCATAAAAGGAATCATAGATCAAGAAATAACATGGATGACTATTCACCTTAACTGCAACTTGTAAGTTCACAACTTTCTAAAACTTCTACATTGCAAAATATAAACAACTAACAATTGAGTTGCTACATTTTACAATTACAAATCCACTTAAATCCTAGTAAAATAATAATATATCCAAATCAGTAGTTCTATTTCTTATTATGAAACATCATTGTTATTGCCATGGTCTTGAGAAAAGATATTCAAACTTGGGATAGGAGACTTACTTTCATAAGCTAGAACCGTGAAGTTGTTAGAACTTGGCTATTACTGAACTTGATAGCACTTAAGGAACCAGCGCTGGCTTTTCCAAGACTTCTTGTCCTAGAATGTACATCTTCATGTCCTATGTTCTCCTTGTTTGTTAGATCATGTATTTGTCTCCTTGGTGCAGATATGTCTCCTTGGTCAGATGAGATGTGTCTAACAGCAGTTAACACCTAGAATTGGGTACAAATAATATTTAGCATCTAAATTTTTGCAACCTTGGAGTAACAAACTATGAATTAGGAAAATTGTCTAGTACCTTGGAATATAGTGCTTTGCCATTAGGATGAATGAGCTGAAATTTGGTCAAAAATAAATAAGTTGCATGTAATGATGTAAAGAATGTAGGCAAAGTAACTAATTAGTTATAGGCATCATACATTTTCTCGTGGCCACGGGATGCAACGGGCTTGAGCATTTCCTAGTATGTTGATCATTTCATTTGCACGAGGCAGTATGGTGTGCTGGTTGAATACGGCGTTAACAAGTATATCTACACAATCATTTAGTGCCTTGCCATCGATAGAGATAGCATTCCTATCCGTCTTCTGAATGGTACCTAGCGCAACCATTTTCCCACTTGTTGGAGATGTTATGCCAACTTCCATGCCACATTTTAAAGTAGTTTCTTCCTTAGACCCAACCTAAAAGACAATATAATAGTTTGAGCATGTCTTCTATTAGCTAGTTCACCATGAATTTAGATAAGAAACATGTAAGAAAAACCAGACCTCAAGCTCCTCATGGAGTGGTGTTTGAAACTTTCTTTTTCTGTGTTGTAGATTGAGCTCAGATGGTGCTGGTTTCTTTGATTTGCGCTGGATAACAGTTGGCGGCGGCATATTCTCCTTGTTCAATTCTAATGGAGGAGATCGAAGCTTCTTTTTTCGTTGACAAGGTGGTGTCACTTTACTACATGGCTAGTCATTCAGAAAAAAAATAATCAGCAACAATTAGTTGCACTAAAATTTAACTCAGCACATGTATTAAATGCCAAATTTGTTGAATACCTCTGTTTGTTTGTTCAATTCTAGCTGAGGAGACCTAAATCTCTGTTTTTGTAGAGGAGCAGATGTCACTTTACAAGATGGCTAGTCATTTAGAAACAAATAATAATCAGCAACAATCAACTGCACTAAATTTTAACTCAGCACATATATTAAATGATAAATTGTTGCATACCTTTGCTTGTTTGTTCAATTCTAGCCGAGGAGATTTAAAACTTTGTTTTTGTAGAGGAGCAGATGTCACTTTACTACATGGCTAGTCATTCAGAAAAAAAATAATCAACAACAATTAGTTGCACTAAAATTTAACTCAGCACATGTATTGAATGCCAAATTTGTTGAATACCTCTGTTTGTTTGTTCAATTCTAGCTGAGGAGATCTAAATCTCTGTTTTTGTAGAGGAGCAGATGTCACTTTACTATATGGCTAGTCGTTCAGAAACAAATAATAATCAGCAACAATCAGCTGCACTAAATTTTAACTCAGCACATGAGTTAAATGCTAAATTTATTGCATACCTCTGATCGTGGAAGTGTTTTCTTGTTTCTAGATGAAAGTGATGGTGCATGATTATTGTAATTCACATCATCCAACTCCTTCAAACAAAAATTATAGGATGCATTACATACCATGACTTCTTGAGACAATGAATGATGCAAGAGGGAAAGAAAGGAAATTACCTCCAATTGATGTTTAGTTGCTGACTTAGGCACGGGACTCCTAGTTATAGGTGCATGCCCCTGAGAAGATAGCAACATACTTTTTAATTCCTCATATTGTTTCTCCAATCTTTCATTTTGAGCCATCATCGAAGTCTGACTTGCTACTAATGTATCCACCATACATCGAAGCTCCCTGTTTTCTTGTTTTGTCTCTTGTAATTGTGCGATAGCTTCAGCTAAGCGAGTTGAAGCCACTCCACCTACTAATAGCCCCAAGCCACTTCTCTTTGCATTTTTTTTTCTTGGAAAAATTTCTGAATAAAGATCATCATCATGTGCTTCCTCACCAATATGTGCAGGGTTCTCCTCAATCCTTCTTTTAATCCTTTCCTGAAAATAACAACCATTTTTTGTTAACTACGAAGTAGACTTGTGCAAGCACTAAAGGAAAATCAGAAACAAAGAACATACAATTTTGTCACTACTGTATTCATCTACAGGTTCTCCATTTCGTTTGGTATGAGTAAGTACATAGAGTTCAGCACGTCCTACTTCTCTATTCTCTTTAATCTCCTGCAACAATACGACAATACCCATGAGAATTTACACTTGCACAACAAAAATAATTTGAAAGTCCATAGAAACACAAAAAGTACCGTTTGATCTAGAACAACAGCAAAACTTTGTGAACCAGTGGTGTGAGAAGCATTAAGTTGCAATGCTCGCGATGCTTTATTCTTCTCAGATTTAACCTAAGCAACAAAATATCAAATAAGATTAAGAAAATTAATAGTTATGTTTCTTCTATAATTTATGTCAAACATGTACTAATTTTGGCAAATTGAACTTACTGTAGCTGCTTTAGTCTTCCAATGCCTTACTAACCACACCCACTGAGCTATAGGGATTCTATTTTTGCAACCATTAATTATATTCCGTGTCCTTGATAACTCAGGATTGTAGTACTTGCTCTTTAAAACAGCCTTGAAATCTTTCCATTTTTTGCTCGCTGATTGCAATACCCAAGGCTTATATTGATCCTCAATGGCAAAAAGTGCCTATGACACAGTGTTGTTAGCACCACAATACCTAGTTTGTTTATATATGACAGTGCAGGTGCAAGTTCAAGATATTAAAGCTGGGATGTACCTGGACAGTTGTCCATACTTTCATCTTATTTGCTTCTGGTACCTTGCTCCAATTCCTTGCAGCTAAGGATACATATGTGCCTTTCACAAGGGTTCCAATAAAATTGGTTAACTTGCAAGTCTTTAATCCACAAGGTTGACCATATCTATTGAATTTCAATCTAATCTTTTGGCTAGGATCATGCTCCTTCCACAGCGATCTCATCAT
More
|
||||||||||
| CDS seq | ATGATGAGATCGCTGTGGAAGGAGCATGATCCTAGCCAAAAGATTAGATTGAAATTCAATAGATATGGTCAACCTTGTGGATTAAAGACTTGCAAGTTAACCAATTTTATTGGAACCCTTGTGAAAGGCACATATGTATCCTTAGCTGCAAGGAATTGGAGCAAGGTACCAGAAGCAAATAAGATGAAAGTATGGACAACTGTCCAGGCACTTTTTGCCATTGAGGATCAATATAAGCCTTGGGTATTGCAATCAGCGAGCAAAAAATGGAAAGATTTCAAGGCTGTTTTAAAGAGCAAGTACTACAATCCTGAGTTATCAAGGACACGGAATATAATTAATGGTTGCAAAAATAGAATCCCTATAGCTCAGTGGGTGTGGTTAGTAAGGCATTGGAAGACTAAAGCAGCTACAGAGTTGGATGATGTGAATTACAATAATCATGCACCATCACTTTCATCTAGAAACAAGAAAACACTTCCACGATCAGAGCCATATAGTAAAGTGACATCTGCTCCTCTACAAAAACAGAGATTTAGATCTCCTCAGCTAGAATTGAACAAACAAACAGAGCCATGTAGTAAAGTGACATCTGCTCCTCTACAAAAACAAAGTTTTAAATCTCCTCGGCTAGAATTGAACAAACAAGCAAAGCCATCTTGTAAAGTGACATCTGCTCCTCTACAAAAACAGAGATTTAGGTCTCCTCAGCTAGAATTGAACAAACAAACAGAGCCATGTAGTAAAGTGACACCACCTTGTCAACGAAAAAAGAAGCTTCGATCTCCTCCATTAGAATTGAACAAGGAGAATATGCCGCCGCCAACTGTTATCCAGCGCAAATCAAAGAAACCAGCACCATCTGAGCTCAATCTACAACACAGAAAAAGAAAGTTTCAAACACCACTCCATGAGGAGCTTGAGGTGTTAACTGCTGTTAGACACATCTCATCTGACCAAGGAGACATATCTGCACCAAGGAGACAAATACATGATCTAACAAACAAGGAGAACATAGGACATGAAGATGTACATTCTAGGACAAGAAGTCTTGGAAAAGCCAGCGCTGGTTCCTTAAGTGCTATCAAGTTCAGTAATAGCCAAGTTCTAACAACTTCACGGTTCTAG
More
|
||||||||||
| Protein seq | MMRSLWKEHDPSQKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGTYVSLAARNWSKVPEANKMKVWTTVQALFAIEDQYKPWVLQSASKKWKDFKAVLKSKYYNPELSRTRNIINGCKNRIPIAQWVWLVRHWKTKAATELDDVNYNNHAPSLSSRNKKTLPRSEPYSKVTSAPLQKQRFRSPQLELNKQTEPCSKVTSAPLQKQSFKSPRLELNKQAKPSCKVTSAPLQKQRFRSPQLELNKQTEPCSKVTPPCQRKKKLRSPPLELNKENMPPPTVIQRKSKKPAPSELNLQHRKRKFQTPLHEELEVLTAVRHISSDQGDISAPRRQIHDLTNKENIGHEDVHSRTRSLGKASAGSLSAIKFSNSQVLTTSRF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G008510 | OsN22_04G008510_01 | Chr04 | 15519402 | 15523324 | - | NAM | ||
| CDS seq | ATGATGAGATCGCTGTGGAAGGAGCATGATCCTAGCCAAAAGATTAGATTGAAATTCAATAGATATGGTCAACCTTGTGGATTAAAGACTTGCAAGTTAACCAATTTTATTGGAACCCTTGTGAAAGGCACATATGTATCCTTAGCTGCAAGGAATTGGAGCAAGGTACCAGAAGCAAATAAGATGAAAGTATGGACAACTGTCCAGGCACTTTTTGCCATTGAGGATCAATATAAGCCTTGGGTATTGCAATCAGCGAGCAAAAAATGGAAAGATTTCAAGGCTGTTTTAAAGAGCAAGTACTACAATCCTGAGTTATCAAGGACACGGAATATAATTAATGGTTGCAAAAATAGAATCCCTATAGCTCAGTGGGTGTGGTTAGTAAGGCATTGGAAGACTAAAGCAGCTACAGAGTTGGATGATGTGAATTACAATAATCATGCACCATCACTTTCATCTAGAAACAAGAAAACACTTCCACGATCAGAGCCATATAGTAAAGTGACATCTGCTCCTCTACAAAAACAGAGATTTAGATCTCCTCAGCTAGAATTGAACAAACAAACAGAGCCATGTAGTAAAGTGACATCTGCTCCTCTACAAAAACAAAGTTTTAAATCTCCTCGGCTAGAATTGAACAAACAAGCAAAGCCATCTTGTAAAGTGACATCTGCTCCTCTACAAAAACAGAGATTTAGGTCTCCTCAGCTAGAATTGAACAAACAAACAGAGCCATGTAGTAAAGTGACACCACCTTGTCAACGAAAAAAGAAGCTTCGATCTCCTCCATTAGAATTGAACAAGGAGAATATGCCGCCGCCAACTGTTATCCAGCGCAAATCAAAGAAACCAGCACCATCTGAGCTCAATCTACAACACAGAAAAAGAAAGTTTCAAACACCACTCCATGAGGAGCTTGAGGTGTTAACTGCTGTTAGACACATCTCATCTGACCAAGGAGACATATCTGCACCAAGGAGACAAATACATGATCTAACAAACAAGGAGAACATAGGACATGAAGATGTACATTCTAGGACAAGAAGTCTTGGAAAAGCCAGCGCTGGTTCCTTAAGTGCTATCAAGTTCAGTAATAGCCAAGTTCTAACAACTTCACGGTTCTAG
More
|
|||||||
| Protein seq | MMRSLWKEHDPSQKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGTYVSLAARNWSKVPEANKMKVWTTVQALFAIEDQYKPWVLQSASKKWKDFKAVLKSKYYNPELSRTRNIINGCKNRIPIAQWVWLVRHWKTKAATELDDVNYNNHAPSLSSRNKKTLPRSEPYSKVTSAPLQKQRFRSPQLELNKQTEPCSKVTSAPLQKQSFKSPRLELNKQAKPSCKVTSAPLQKQRFRSPQLELNKQTEPCSKVTPPCQRKKKLRSPPLELNKENMPPPTVIQRKSKKPAPSELNLQHRKRKFQTPLHEELEVLTAVRHISSDQGDISAPRRQIHDLTNKENIGHEDVHSRTRSLGKASAGSLSAIKFSNSQVLTTSRF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0610000 | SBH | 1.692158 | 0.757211 | 1.655695 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52050 | SBH | 1.068280 | 0.475443 | 0.397885 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0610000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026850 | SBH | 0.413197 | 3.096853 | 3.241896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026610 | SBH | 0.863571 | 3.561381 | 3.344225 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026290 | SBH | 0.238974 | 0.301559 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026560 | SBH | 6.881021 | 15.412815 | 17.182211 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0490700 | SBH | 12.223387 | 29.1148535 | 42.150934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0018500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026270 | SBH | 1.099003 | 6.072578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025420 | SBH | 4.591807 | 15.234076 | 8.449032 |
