Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0610000 | OGI:04091400 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:30914219-30919366 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAAACACAAGGTATAACCCTATAGAGAGTATGTTTGGGGGAGTTTCTAGCTGCTGCAACTTCTCCCATAACCAAAAGCTCCCTTAAATAGTCTATGTTTTGGTACAGATTCTGAGAAGTTGTAGATATAGAATCCAGAAAATGAACTATAAGCTCGAAGGCAGAAGCTGAGAAACCCAACTTTTCTATATTCTCAGAAACTGGCTACCAATTAACTGCTTCTCAGAATCTCAAGCTTCACTAAACACGCCCAAAATCATTTCACAGGAAGGGAAATGCGAAGTGAAGTAGTTCTAGTCAGTGTAAACAAAACAGAAGAGAGTATCCTGTTACAGTAGCCAATAAAACAGAAGAGTACAAGCACTGGGCTCCGGGTTTAGAGAGCCAACATTACACATGAACGGCCAACTAAACGTCTAAACCTCTTCGTTTCATACACCATTCCACGATCAAGATGGAATCAACCATGCATATTGGCATTGTCTGTGGTGCGATTATCATCGAAATCGTGGACTAGGGGAGGCAGAAGGATCGTACAGTGCAGAGTAGTCAAGATATGGCTGCAAAATCTCATGAGCGCTTCGTGAATTTTGGACCTGGAATGGATGAGGAGGAAGCATGGATTCCGGATCAGAAACAGTGGGATAAGCTGTTACAATGATAGATACTTTCTGGAGGTGCAAAATGGATTATAGCTGGATACTCCATTTACCTGTGGAAAGTTTTGCGTTTGACCATCCGATAGGTCACCAGTTGACGTCGTCTTCTGCATAGCACTAACTGTACTCTTCATATTCGCCAAATCCTCTTGCAGTTTCTTCTGACTTTCTTCCATTGCCACCATCTTCTTCCTCAGCGTCGCTGCCTCGTCTTCAGCCTTTCTTTTAGCCTCCTCAGCTTCCTTGAAGGATGCCTGCAAGACTGCCTTCCGACGATGACCCCTCTTCCCACGCAGGCCAATGGAGCAGGATTCAAGTCCGACTTTGTGTGCTGCAGAGTCACTTCCTGAGCATTCGGCTTGCTTATGAGATTGTTCACGGACTCGTGCCTGCATGGAAAATAAAACTCAGATCTCAACCAGAAAATTATTAGTATAAATTACTTCCTTGTGTCTCACAATGATATCAGCTTTTTCCTTCTTCATAGGCTTCCCGTTTCTGTGTGTATGAGTCAATAGGAACAAATCCGCAGCAGTGGGCTCCTCATTGTTAGGCCGCTTCTGCTTCTGTTGCATGCGGTAATACAATTAGCACGTCATTGGTGATAGTGAAAGCAAAGCAACAGGATTTTAATTACCTCCTCCTCAATTATCCGTGCAAAGCTCTTTGTTCCTGCAGTATGCGTAGCGGTTACATTTGCCCGACAAGCTTTATTTCGACTACTCACAGCCTGATCAAAGATAAAGTTACCAATCATTTAACAAGCCTGCCAAATTGCAAACAAGATGGCAAGAAAATAGAATGGTCGGTGTTACCTTCGCTTTTTCCGTACCCCAATATGCAACTAAATATTGCCACTGTTCCTTGAGAACGCGAGGATTTTGATCAGCAAGGCATTCCTCCACCGTTTCATGAGTATCATAATGTTTTTGTTTTAAGAGAGCTTTCCAACTCTTCCACTTTCTTCCTATACACTTCATGATCCAGAATTCAGCAGCTGGAGCAATGTCAAATTTGAGCTACATCAACAAACAAGGGGTGTCAGAGAAGAAACTAAAGGCACAGAAAGCAGCAGTAACCATATAAAACTGCATACCTTGACAATATGATACATCACATCCTTGTTTTTCTCTGGAACACGTCTCCAATCTTGATGTGTCAGAGGTGCCAATATTCCGTCACGTGCTAATGCACCCAGAAAGGTAGATAAGGTGCCTGCCTCTTTCCCAACAGGCTCCCCCGAAGCGTTCAATAGCACTGGAATGCGGACACCCTTAGGCAAATTCCACACCTTGAGACAGAGTGTAAGACCACGACCACGACCACACCCTTGATTCCTCTTGGTACCTGCTTGAAAGGAAAAAAAAACAATGAGACAATCAGATGAGCATAACAAGAACAGCTGTCAAATGGTGGTGTTCTTTATAGACAGAGTATGAATAAGGAAATGAACAGGATTTGATAATGAAACAGGGGAGTGTGAACAGTTTGTTTCAAACAAATCCAATTTATTATATGTTTAGTGGTCTACATGGGAAAATGAATATTTTAGTGTGACAAGTTCCTCTCGGTACCCACGAGTCTCCATTCTTCTGTGGATTCAGCATGGATAAAATGCAAAAAAAATAATAAAAAAAAAACCCTCCAACTATGGTAATCATGGGCAGATAGCTTACTGAGTTCAAAATGATATGTATTATAGCTTAATAAGACTCATAATCGCTGCTCCTAATTTCCAAAGAAAGAAAACACTTCTAATCCCCAAGAATTCTTTATAGATATGTTTACCCTCAGCAGTGTAACGGATAAGAGTGAAGGAGAATAGCTTAATGAGTTTAAAAGGATTTGCATCATTGCTTAATAAGATTCATAATCCCAATGAAATTATTTTATCTTTATAAGGAGGTTTATTCTCATCAGTGTAAAATAGACAATAATAAGAGCAAGGACAATGGCTCACTGAGTTCAAAAGGATATGTACCAGGGCTTAATAAGATTCGTCATCCTTAGAAAAATATTTTATCTTTATATGGAGGCTTATTCGCCCTAATGTGAGGCACAATAATAAGAGTGAAGCGTAATAGCCTACTGAGTTAAAAAGGATATGGGTTGTTGCTTAATAAGATTCATAATCCCAAAGAAAATATCTCTTTCTAAGAAAACTTATTCTCCATGGTGCAACACATAATAATAAGAGTGAAGGACAATAGAAGTGTGAATTACCAACATTCCAGCGTTCGTCGCAATCTTCAGAATCACTTAATGCATGCACATCACCAGAACTTGCCTGTGACATCGCACGCTCAAATGATGAATTACTAGATCTTAGCTTCGCAAGGGCCTTTCTAACTTCCTGCGGAACGTAGTTACATGCAAAATGCTCAGGATCAGACATGTCGATATCGGAAGGTGGTGGTGTAGTTAACTGGACGTTGTCAAACTCATTAGAGACTTTTTCAGGGGTCATATGCCTAGGGGATGAACTAGGGCATATGCTGTTAATGATTCTGTCGATATCTGGAGAGTTAGACAAACTCTGATCTGGAGAAGGCATATACAGATCATCAGGCTCATTTTCTGATGGTTCACTGTCTGTGATGGCAGCTGGCATGTGGCCAGTTGAAGATGCAGCTTGCCTCTCAACAGGATCCCTGTGTATTGATTCAGTATCCATGACTGCAGCAGATACTTGGTCATTTTGAGAAACCTGCTGCTCAAAAGACTTGTTTTTGCTGTGTTTTTTGTCTTTTGCAGCAGGAGAATCTTTGGCCAAACGTTTACTGCGCCTAAGTTCAAGACCTGAATTTGAATTAGCCAACAAACTCTTCGTTTTTCTCTTGCGAATTGTGCAGCTAAAAGGTTCCGATTGTTCTTTTTCCGGGCATCTAATTCTCCCACTGCTATCCCCTGCAACAGTCTGATTGTCCAGTTGAGCACATGTCTCTTGTCTATGGTTTACTTGACTTGCAGTCCTCAATTGCTTTTCCTGGACATGAACCACACCATCTGCATGCTTATCCTGAGCATTCTCTTGAGAAATTGCAATATAAGAAGGCTGTTTTTGTGCCTGTTGTATGATCCGCTTGGAGTTGGGAGCCTGTGCCTGATTCTTATCTACATTTATAGGTTTGGGTCCAACAGAGTGCACCGTTGTGCAATTTATACGCGTTGCAGTAGTCTCATCAATCAGCGCAATGCATCTTGACTCACTAAAAACTGTGGGATCAATAGAATCTGCCTGTACTTCATTAACTCTATCTCTATGATCTAGATGTGTCTGCTTCATACGAAAAGCATAGCTAGAATGTTGATCTTGTGCCTGATGCCTGAACTGGTTCAGAGGCTTTTCTTGTGTCTTTTCTGCACTTATGATTCCACGGCCAACAGATTCTCTGTTTCTCTGCTTATGATGCCTTCTAATAATCTCATTGGCCCCATGTATCCCTTCTCCATCCATCATGTAATCAGAACGATACGGGTCTGACTGCTCCGGAAGCTGATTTGGACGCTTTGTATGTCCCTGTTCCATACGATTTAGTGGATCGTTAGGTTCTGCTTGGATGAGTCCCGTGCGACTCGCAATATTAGGATGCTCTTCGTGCGCCTGCATTACAACATCAACACGAACCAATGCACTATTAGAGACAGCAGTGTAGCATATCAGTTCAATGGAGAGAATATTTAGCATCAACTTCATGATAATTTCTCCAATTGAGAATATGCTTCACTCAATCAAGCCAGGAATCATGAAACAAAACATAGCTGTAGTCAAACTGTTTTTTAACATCAAATGGGGCATTTGCCCTAACCTTTCTAGCAACACTTTCATCACTCATAGAGTCACAGTACATCGCTTTGCTGAACACCATTCTACCTCCTCTAAAAAGAAGTGATATGGTAGCCATTGAATTGAGTCAATTCAATTGAGGACACGGGAGTGGAAGCGTACCTCCCGGACTTGGAGGATCGGCGGTGGCGACGAGGTGCCGATCGGCACCACGGGGACGGCGCCCTCCACCGCGGCGGACGACAGGAGGTAGTGCCGGAGCCGCGCGGTGTCGACGGCGAGCTCGGCGGCGCAGATGGGGCAGGCGCAGCGCGCCAGCCCGACGGGCACGCTGAGCAGCGCCCCGCAGGCGCCGCAGGGGAGCCGCGCGCCGCGGACGTCGGCGGCGCCGCGGGGCAGGGGCAGCGCCTTCCTCCGTGGCGGCGGCGGCGGCATGAGCTCCGGGGGCAGCGACTGCGGCATGGCGCAGTCGGGGCAGATGAACTCCGTCAGTCCCGGCTCCACCTCCAGCGTCTCCCCGCACCCCGCGCACCGCACCTCCAGCGGCTCCGGCGAGCCTCCCTCCGCCGCCGCCGACGCCGCAGCGCGCCCTGGCGCCATTGGCGCAGGTGGGAAGAGGTTTCGAGGTTGTTTTTTTTTTTTCTGCGGCGAATGAGGAGAAGTGGGGAGGGAGAGTGGGGGGAAGGAGAAGCGTTGCGGGA
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| CDS seq | GGGGCCAATGAGATTATTAGAAGGCATCATAAGCAGAGAAACAGAGAATCTGTTGGCCGTGGAATCATAAGTGCAGAAAAGACACAAGAAAAGCCTCTGAACCAGTTCAGGCATCAGGCACAAGATCAACATTCTAGCTATGCTTTTCGTATGAAGCAGACACATCTAGATCATAGAGATAGAGTTAATGAAGTACAGGCAGATTCTATTGATCCCACAGTTTTTAGTGAGTCAAGATGCATTGCGCTGATTGATGAGACTACTGCAACGCGTATAAATTGCACAACGGTGCACTCTGTTGGACCCAAACCTATAAATGTAGATAAGAATCAGGCACAGGCTCCCAACTCCAAGCGGATCATACAACAGGCACAAAAACAGCCTTCTTATATTGCAATTTCTCAAGAGAATGCTCAGGATAAGCATGCAGATGGTGTGGTTCATGTCCAGGAAAAGCAATTGAGGACTGCAAGTCAAGTAAACCATAGACAAGAGACATGTGCTCAACTGGACAATCAGACTGTTGCAGGGGATAGCAGTGGGAGAATTAGATGCCCGGAAAAAGAACAATCGGAACCTTTTAGCTGCACAATTCGCAAGAGAAAAACGAAGAGTTTGTTGGCTAATTCAAATTCAGGTCTTGAACTTAGGCGCAGTAAACGTTTGGCCAAAGATTCTCCTGCTGCAAAAGACAAAAAACACAGCAAAAACAAGTCTTTTGAGCAGCAGGTTTCTCAAAATGACCAAGTATCTGCTGCAGTCATGGATACTGAATCAATACACAGGGATCCTGTTGAGAGGCAAGCTGCATCTTCAACTGGCCACATGCCAGCTGCCATCACAGACAGTGAACCATCAGAAAATGAGCCTGATGATCTGTATATGCCTTCTCCAGATCAGAGTTTGTCTAACTCTCCAGATATCGACAGAATCATTAACAGCATATGCCCTAGTTCATCCCCTAGGCATATGACCCCTGAAAAAGTCTCTAATGAGTTTGACAACGTCCAGTTAACTACACCACCACCTTCCGATATCGACATGTCTGATCCTGAGCATTTTGCATGTAACTACGTTCCGCAGGAAGTTAGAAAGGCCCTTGCGAAGCTAAGATCTAGTAATTCATCATTTGAGCGTGCGATGTCACAGGCAAGTTCTGGTGATGTGCATGCATTAAGTGATTCTGAAGATTGCGACGAACGCTGGAATGTTGGTACCAAGAGGAATCAAGGGTGTGGTCGTGGTCGTGGTCTTACACTCTGTCTCAAGGTGTGGAATTTGCCTAAGGGTGTCCGCATTCCAGTGCTATTGAACGCTTCGGGGGAGCCTGTTGGGAAAGAGGCAGGCACCTTATCTACCTTTCTGGGTGCATTAGCACGTGACGGAATATTGGCACCTCTGACACATCAAGATTGGAGACGTGTTCCAGAGAAAAACAAGGATGTGATGTATCATATTGTCAAGCTCAAATTTGACATTGCTCCAGCTGCTGAATTCTGGATCATGAAGTGTATAGGAAGAAAGTGGAAGAGTTGGAAAGCTCTCTTAAAACAAAAACATTATGATACTCATGAAACGGTGGAGGAATGCCTTGCTGATCAAAATCCTCGCGTTCTCAAGGAACAGTGGCAATATTTAGTTGCATATTGGGGTACGGAAAAAGCGAAGGCTGTGAGTAGTCGAAATAAAGCTTGTCGGGCAAATGTAACCGCTACGCATACTGCAGGAACAAAGAGCTTTGCACGGATAATTGAGGAGGAGAAGCAGAAGCGGCCTAACAATGAGGAGCCCACTGCTGCGGATTTGTTCCTATTGACTCATACACACAGAAACGGGAAGCCTATGAAGAAGGAAAAAGCTGATATCATTGCACGAGTCCGTGAACAATCTCATAAGCAAGCCGAATGCTCAGGAAGTGACTCTGCAGCACACAAAGTCGGACTTGAATCCTGCTCCATTGGCCTGCGTGGGAAGAGGGGTCATCGTCGGAAGGCAGTCTTGCAGGCATCCTTCAAGGAAGCTGAGGAGGCTAAAAGAAAGGCTGAAGACGAGGCAGCGACGCTGAGGAAGAAGATGGTGGCAATGGAAGAAAGTCAGAAGAAACTGCAAGAGGATTTGGCGAATATGAAGAGTACAGTTAGTGCTATGCAGAAGACGACGTCAACTGGTGACCTATCGGATGGTCAAACGCAAAACTTTCCACAGGTCCAAAATTCACGAAGCGCTCATGAGATTTTGCAGCCATATCTTGACTACTCTGCACTGTACGATCCTTCTGCCTCCCCTAGTCCACGATTTCGATGA
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| Protein seq | GANEIIRRHHKQRNRESVGRGIISAEKTQEKPLNQFRHQAQDQHSSYAFRMKQTHLDHRDRVNEVQADSIDPTVFSESRCIALIDETTATRINCTTVHSVGPKPINVDKNQAQAPNSKRIIQQAQKQPSYIAISQENAQDKHADGVVHVQEKQLRTASQVNHRQETCAQLDNQTVAGDSSGRIRCPEKEQSEPFSCTIRKRKTKSLLANSNSGLELRRSKRLAKDSPAAKDKKHSKNKSFEQQVSQNDQVSAAVMDTESIHRDPVERQAASSTGHMPAAITDSEPSENEPDDLYMPSPDQSLSNSPDIDRIINSICPSSSPRHMTPEKVSNEFDNVQLTTPPPSDIDMSDPEHFACNYVPQEVRKALAKLRSSNSSFERAMSQASSGDVHALSDSEDCDERWNVGTKRNQGCGRGRGLTLCLKVWNLPKGVRIPVLLNASGEPVGKEAGTLSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIVKLKFDIAPAAEFWIMKCIGRKWKSWKALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKAVSSRNKACRANVTATHTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGKPMKKEKADIIARVREQSHKQAECSGSDSAAHKVGLESCSIGLRGKRGHRRKAVLQASFKEAEEAKRKAEDEAATLRKKMVAMEESQKKLQEDLANMKSTVSAMQKTTSTGDLSDGQTQNFPQVQNSRSAHEILQPYLDYSALYDPSASPSPRFR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0610000 | OsNip_04t0610000-02 | Chr04 | 30914219 | 30917473 | - | RAP2018-11-26 | ||
| CDS seq | GACAGTGAACCATCAGAAAATGAGCCTGATGATCTGTATATGCCTTCTCCAGATCAGAGTTTGTCTAACTCTCCAGATATCGACAGAATCATTAACAGCATATGCCCTAGTTCATCCCCTAGGCATATGACCCCTGAAAAAGTCTCTAATGAGTTTGACAACGTCCAGTTAACTACACCACCACCTTCCGATATCGACATGTCTGATCCTGAGCATTTTGCATGTAACTACGTTCCGCAGGAAGTTAGAAAGGCCCTTGCGAAGCTAAGATCTAGTAATTCATCATTTGAGCGTGCGATGTCACAGGCAAGTTCTGGTGATGTGCATGCATTAAGTGATTCTGAAGATTGCGACGAACGCTGGAATGTTGGTACCAAGAGGAATCAAGGGTGTGGTCGTGGTCGTGGTCTTACACTCTGTCTCAAGGTGTGGAATTTGCCTAAGGGTGTCCGCATTCCAGTGCTATTGAACGCTTCGGGGGAGCCTGTTGGGAAAGAGGCAGGCACCTTATCTACCTTTCTGGGTGCATTAGCACGTGACGGAATATTGGCACCTCTGACACATCAAGATTGGAGACGTGTTCCAGAGAAAAACAAGGATGTGATGTATCATATTGTCAAGCTCAAATTTGACATTGCTCCAGCTGCTGAATTCTGGATCATGAAGTGTATAGGAAGAAAGTGGAAGAGTTGGAAAGCTCTCTTAAAACAAAAACATTATGATACTCATGAAACGGTGGAGGAATGCCTTGCTGATCAAAATCCTCGCGTTCTCAAGGAACAGTGGCAATATTTAGTTGCATATTGGGGTACGGAAAAAGCGAAGGCTGTGAGTAGTCGAAATAAAGCTTGTCGGGCAAATGTAACCGCTACGCATACTGCAGGAACAAAGAGCTTTGCACGGATAATTGAGGAGGAGAAGCAGAAGCGGCCTAACAATGAGGAGCCCACTGCTGCGGATTTGTTCCTATTGACTCATACACACAGAAACGGGAAGCCTATGAAGAAGGAAAAAGCTGATATCATTGCACGAGTCCGTGAACAATCTCATAAGCAAGCCGAATGCTCAGGAAGTGACTCTGCAGCACACAAAGTCGGACTTGAATCCTGCTCCATTGGCCTGCGTGGGAAGAGGGGTCATCGTCGGAAGGCAGTCTTGCAGGCATCCTTCAAGGAAGCTGAGGAGGCTAAAAGAAAGGCTGAAGACGAGGCAGCGACGCTGAGGAAGAAGATGGTGGCAATGGAAGAAAGTCAGAAGAAACTGCAAGAGGATTTGGCGAATATGAAGAGTACAGTTAGTGCTATGCAGAAGACGACGTCAACTGGTGACCTATCGGATGGTCAAACGCAAAACTTTCCACAGGTCCAAAATTCACGAAGCGCTCATGAGATTTTGCAGCCATATCTTGACTACTCTGCACTGTACGATCCTTCTGCCTCCCCTAGTCCACGATTTCGATGA
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| Protein seq | DSEPSENEPDDLYMPSPDQSLSNSPDIDRIINSICPSSSPRHMTPEKVSNEFDNVQLTTPPPSDIDMSDPEHFACNYVPQEVRKALAKLRSSNSSFERAMSQASSGDVHALSDSEDCDERWNVGTKRNQGCGRGRGLTLCLKVWNLPKGVRIPVLLNASGEPVGKEAGTLSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIVKLKFDIAPAAEFWIMKCIGRKWKSWKALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKAVSSRNKACRANVTATHTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGKPMKKEKADIIARVREQSHKQAECSGSDSAAHKVGLESCSIGLRGKRGHRRKAVLQASFKEAEEAKRKAEDEAATLRKKMVAMEESQKKLQEDLANMKSTVSAMQKTTSTGDLSDGQTQNFPQVQNSRSAHEILQPYLDYSALYDPSASPSPRFR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0610000 | OsNip_04t0610000-01 | Chr04 | 30914497 | 30918316 | - | RAP2018-11-26 | ||
| CDS seq | GGGGCCAATGAGATTATTAGAAGGCATCATAAGCAGAGAAACAGAGAATCTGTTGGCCGTGGAATCATAAGTGCAGAAAAGACACAAGAAAAGCCTCTGAACCAGTTCAGGCATCAGGCACAAGATCAACATTCTAGCTATGCTTTTCGTATGAAGCAGACACATCTAGATCATAGAGATAGAGTTAATGAAGTACAGGCAGATTCTATTGATCCCACAGTTTTTAGTGAGTCAAGATGCATTGCGCTGATTGATGAGACTACTGCAACGCGTATAAATTGCACAACGGTGCACTCTGTTGGACCCAAACCTATAAATGTAGATAAGAATCAGGCACAGGCTCCCAACTCCAAGCGGATCATACAACAGGCACAAAAACAGCCTTCTTATATTGCAATTTCTCAAGAGAATGCTCAGGATAAGCATGCAGATGGTGTGGTTCATGTCCAGGAAAAGCAATTGAGGACTGCAAGTCAAGTAAACCATAGACAAGAGACATGTGCTCAACTGGACAATCAGACTGTTGCAGGGGATAGCAGTGGGAGAATTAGATGCCCGGAAAAAGAACAATCGGAACCTTTTAGCTGCACAATTCGCAAGAGAAAAACGAAGAGTTTGTTGGCTAATTCAAATTCAGGTCTTGAACTTAGGCGCAGTAAACGTTTGGCCAAAGATTCTCCTGCTGCAAAAGACAAAAAACACAGCAAAAACAAGTCTTTTGAGCAGCAGGTTTCTCAAAATGACCAAGTATCTGCTGCAGTCATGGATACTGAATCAATACACAGGGATCCTGTTGAGAGGCAAGCTGCATCTTCAACTGGCCACATGCCAGCTGCCATCACAGACAGTGAACCATCAGAAAATGAGCCTGATGATCTGTATATGCCTTCTCCAGATCAGAGTTTGTCTAACTCTCCAGATATCGACAGAATCATTAACAGCATATGCCCTAGTTCATCCCCTAGGCATATGACCCCTGAAAAAGTCTCTAATGAGTTTGACAACGTCCAGTTAACTACACCACCACCTTCCGATATCGACATGTCTGATCCTGAGCATTTTGCATGTAACTACGTTCCGCAGGAAGTTAGAAAGGCCCTTGCGAAGCTAAGATCTAGTAATTCATCATTTGAGCGTGCGATGTCACAGGCAAGTTCTGGTGATGTGCATGCATTAAGTGATTCTGAAGATTGCGACGAACGCTGGAATGTTGGTACCAAGAGGAATCAAGGGTGTGGTCGTGGTCGTGGTCTTACACTCTGTCTCAAGGTGTGGAATTTGCCTAAGGGTGTCCGCATTCCAGTGCTATTGAACGCTTCGGGGGAGCCTGTTGGGAAAGAGGCAGGCACCTTATCTACCTTTCTGGGTGCATTAGCACGTGACGGAATATTGGCACCTCTGACACATCAAGATTGGAGACGTGTTCCAGAGAAAAACAAGGATGTGATGTATCATATTGTCAAGCTCAAATTTGACATTGCTCCAGCTGCTGAATTCTGGATCATGAAGTGTATAGGAAGAAAGTGGAAGAGTTGGAAAGCTCTCTTAAAACAAAAACATTATGATACTCATGAAACGGTGGAGGAATGCCTTGCTGATCAAAATCCTCGCGTTCTCAAGGAACAGTGGCAATATTTAGTTGCATATTGGGGTACGGAAAAAGCGAAGGCTGTGAGTAGTCGAAATAAAGCTTGTCGGGCAAATGTAACCGCTACGCATACTGCAGGAACAAAGAGCTTTGCACGGATAATTGAGGAGGAGAAGCAGAAGCGGCCTAACAATGAGGAGCCCACTGCTGCGGATTTGTTCCTATTGACTCATACACACAGAAACGGGAAGCCTATGAAGAAGGAAAAAGCTGATATCATTGCACGAGTCCGTGAACAATCTCATAAGCAAGCCGAATGCTCAGGAAGTGACTCTGCAGCACACAAAGTCGGACTTGAATCCTGCTCCATTGGCCTGCGTGGGAAGAGGGGTCATCGTCGGAAGGCAGTCTTGCAGGCATCCTTCAAGGAAGCTGAGGAGGCTAAAAGAAAGGCTGAAGACGAGGCAGCGACGCTGAGGAAGAAGATGGTGGCAATGGAAGAAAGTCAGAAGAAACTGCAAGAGGATTTGGCGAATATGAAGAGTACAGTTAGTGCTATGCAGAAGACGACGTCAACTGGTGACCTATCGGATGGTCAAACGCAAAACTTTCCACAGGTCCAAAATTCACGAAGCGCTCATGAGATTTTGCAGCCATATCTTGACTACTCTGCACTGTACGATCCTTCTGCCTCCCCTAGTCCACGATTTCGATGA
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| Protein seq | GANEIIRRHHKQRNRESVGRGIISAEKTQEKPLNQFRHQAQDQHSSYAFRMKQTHLDHRDRVNEVQADSIDPTVFSESRCIALIDETTATRINCTTVHSVGPKPINVDKNQAQAPNSKRIIQQAQKQPSYIAISQENAQDKHADGVVHVQEKQLRTASQVNHRQETCAQLDNQTVAGDSSGRIRCPEKEQSEPFSCTIRKRKTKSLLANSNSGLELRRSKRLAKDSPAAKDKKHSKNKSFEQQVSQNDQVSAAVMDTESIHRDPVERQAASSTGHMPAAITDSEPSENEPDDLYMPSPDQSLSNSPDIDRIINSICPSSSPRHMTPEKVSNEFDNVQLTTPPPSDIDMSDPEHFACNYVPQEVRKALAKLRSSNSSFERAMSQASSGDVHALSDSEDCDERWNVGTKRNQGCGRGRGLTLCLKVWNLPKGVRIPVLLNASGEPVGKEAGTLSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIVKLKFDIAPAAEFWIMKCIGRKWKSWKALLKQKHYDTHETVEECLADQNPRVLKEQWQYLVAYWGTEKAKAVSSRNKACRANVTATHTAGTKSFARIIEEEKQKRPNNEEPTAADLFLLTHTHRNGKPMKKEKADIIARVREQSHKQAECSGSDSAAHKVGLESCSIGLRGKRGHRRKAVLQASFKEAEEAKRKAEDEAATLRKKMVAMEESQKKLQEDLANMKSTVSAMQKTTSTGDLSDGQTQNFPQVQNSRSAHEILQPYLDYSALYDPSASPSPRFR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0610000 | OsNip_04t0610000-03 | Chr04 | 30914497 | 30919366 | - | IsoSeq | ||
| CDS seq | CCCGCAACGCTTCTCCTTCCCCCCACTCTCCCTCCCCACTTCTCCTCATTCGCCGCAGAAAAAAAAAAAACAACCTCGAAACCTCTTCCCACCTGCGCCAATGGCGCCAGGGCGCGCTGCGGCGTCGGCGGCGGCGGAGGGAGGCTCGCCGGAGCCGCTGGAGGTGCGGTGCGCGGGGTGCGGGGAGACGCTGGAGGTGGAGCCGGGACTGACGGAGTTCATCTGCCCCGACTGCGCCATGCCGCAGTCGCTGCCCCCGGAGCTCATGCCGCCGCCGCCGCCACGGAGGAAGGCGCTGCCCCTGCCCCGCGGCGCCGCCGACGTCCGCGGCGCGCGGCTCCCCTGCGGCGCCTGCGGGGCGCTGCTCAGCGTGCCCGTCGGGCTGGCGCGCTGCGCCTGCCCCATCTGCGCCGCCGAGCTCGCCGTCGACACCGCGCGGCTCCGGCACTACCTCCTGTCGTCCGCCGCGGTGGAGGGCGCCGTCCCCGTGGTGCCGATCGGCACCTCGTCGCCACCGCCGATCCTCCAAGTCCGGGAGGCGCACGAAGAGCA
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| Protein seq | PATLLLPPTLPPHFSSFAAEKKKTTSKPLPTCANGARARCGVGGGGGRLAGAAGGAVRGVRGDAGGGAGTDGVHLPRLRHAAVAAPGAHAAAAATEEGAAPAPRRRRRPRRAAPLRRLRGAAQRARRAGALRLPHLRRRARRRHRAAPALPPVVRRGGGRRPRGADRHLVATADPPSPGGARRA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.692158 | 0.757211 | 1.655695 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0609900 | RBH | 2.571136 | 2.698889 | 4.631905 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52050 | RBH | 1.068280 | 0.475443 | 0.397885 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0610000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0026060 | SBH | 0.773919 | 8.581865 | 14.426943 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026850 | RBH | 0.413197 | 3.096853 | 3.241896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0026610 | RBH | 0.863571 | 3.561381 | 3.344225 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0026290 | RBH | 0.238974 | 0.301559 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026560 | RBH | 6.881021 | 15.412815 | 17.182211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0487200 | RBH | 6.5571325 | 20.7408715 | 25.7345295 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025330 | SBH | 0.548640 | 0.533333 | 1.741575 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0490700 | SBH | 12.223387 | 29.1148535 | 42.150934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025810 | RBH | 0.434930 | 0.245744 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025630 | RBH | 1.129336 | 16.029198 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025690 | RBH | 3.888289 | 13.927725 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0026110 | RBH | 0.946613 | 0.945430 | 1.418750 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026270 | SBH | 1.099003 | 6.072578 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025530 | SBH | 0.665406 | 9.837274 | 5.228647 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025420 | RBH | 4.591807 | 15.234076 | 8.449032 |
