Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0009000 | OGI:07055520 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:17309806-17313728 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatccttggcgttcattgcatcattagtaattagtggtcttttccacaatgcgctcgcaaacaaattatgagcataccaatatgagattgcaactcaaatagagaaatcaaatttaagatcaaaaactaataacaacaatgatttctcagtcacaggacaaaactataatcaacaagaatgacatgatgctactgtaaagtgcaatttgttttcatcctccagcatatgatgatcacacaatcacaagtgtctatattgcactttgtacaaaatcttgacagtatagcttccagttcttattggtggtatgttgcatttgcaagccatgtgaagaaaaccatacagcgaaaataatatgcttcacctgcaaaacacgaattcaagtaggatgttcagatagcctgtaatacaagtgcaacatacgaattcatttgaaatagacaggctatctgcaaatacaagtgcagatctgcacatctagttgcacatctgtattaaatttacaagtcaaatgaggcatctgcacaaattataactgtccataaaagttctaagggaaagaaacaaatgagcataatatgccaatatgccataaaaggaatcatagatcaagaaataacatggatgactattcaccttaactgcaacttgtaagttcacaactttctaaaacttctacattgcaaaatataaacaactaacaattgagttgctacattttacaattacaaatccacttaaatcctagtaaaataataatatatccaaatcagtagttctatttcttattatgaaacatcattgttattgccatggtcttgagaaaagatattcaaacttgggataggagacttactttcataagctagaaccgtgaagttgttagaacttggctattactgaacttgatagcacttaaggaaccagcgctggcttttccaagacttcttgtcctagaatgtacatcttcatgtcctatgttctccttgtttgttagatcatgtatttgtctccttggtgcagatatgtctccttggtcagatgagatgtgtctaacagcagttaacacctagaattgggtacaaataatatttagcatctaaatttttgcaaccttggagtaacaaactatgaattaggaaaattgtctagtaccttggaatatagtgctttgccattaggatgaatgagctgaaatttggtcaaaaataaataagttgcatgtaatgatgtaaagaatgtaggcaaagtaactaattagttataggcatcatacattttctcgtggccacgggatgcaacgggcttgagcatttcctagtatgttgatcattccatttgcacgaggcagtatggtgtgctggttgaatacggcgttaacaagtatatctacacaatcatttagtgccttgccatcgatagagatagcattcctatccgtcttctgaatggtacctagcgcaaccattttcccacttgttggagatgttatgccaacttccatgccacattttaaagtagtttcttccttagacccaacctaaaagacaatataatagtttgagcatgtcttctattagctagttcaccatgaatttagataagaaacatgtaggaaaaaccagacctcaagctcctcatggagtggtgtttgaaactttctttttctgtgttgtagattgagctcagatggtgctggtttctttgatttgcgctggataacagttggcggcggcatattctccttgttcaattctaatggaggagatcgaagcttcttttttcgttgacaaggtggtgtcactttactacatggctagtcattcagAaaaaaaataatcagcaacaattagttgcactaaaatttaactcagcacatgtattaaatgccaaatttgttgaatacctctgtttgtttgttcaattctagctgaggagacctaaatctctgtttttgtagaggagcagatgtcactttacaagatggctagtcatttagaaacaAATaataatcagcaacaatcaactgcactaaattttaactcagcacatatattaaatgataaattgttgcatacctttgcttgtttgttcaattctagccgaggagatttaaaactttgtttttgtagaggagcagatgtcactttactacatggctagtcattcagaaaaaaaataatcaacaacaattagttgcactaaaatttaactcagcacatgtattgaatgccaaatttgttgaatacctctgtttgtttgttcaattctagctgaggagatctaaatctctgtttttgtagaggagcagatgtcactttactatatggctagtcattcagaaacaaataataatcagcaacaatcagctgcactaaattttaactcagcacatgagttaaatgctaaatttaTtgcatacctctgatcgtggaagtgttttcttgtttctagatgaaagtgatggtgcatgattattgtaattcacatcatccaactccttcaaacaaaaattataggatgcattacataccatgacttcttgagacaatgaatgatgcaagagggaaagaaaggaaattacctccaattgatgtttagttgctgacttaggcacgggactcctagttataggtgcatgcccctgagaagatagcaacatactttttaattcctcatattgtttctccaatctttcattttgagccatcatcgaagtctgacttgctactaatgtatccaccatacatcgaagctccctgttttcttgttttgtctcttgtaattgtgcgatagcttcagctaagcgagttgaagccactccacctactaatagccccaagccacttctctttgcatttttttttcttggaaaaatttctgaataaagatcatcatcatgtgcttcctcaccaatatgtgcagggttctcctcaatccttcttttaatcctttcctgaaaataacaaccattttttgttaactacgaagtagacttgtgcaagcactaaaggaaaatcagaaacaaagaacatacaattttgtcactactgtattcatctacaggttctccatttcgtttggtatgagtaagtacatagagttcagcacgtcctacttctctattctctttaatctcctgcaacaatacgacaatacccatgagaatttacacttgcacaacaaaaataatttgaaagtccatagaaacacaaaaagtaccgtttgatctagaacaacagcaaaactttgtgaaccagtggtgtgagaagcattaagttgcaatgctcgcgatgctttattcttctcagatttaacctaagcaacaaaatatcaaataagattaagaaaattaatagttatgtttcttctataatttatgtcaaacatgtactaattttggcaaattgaacttactgtagctgctttagtcttccaatgccttactaaccacacccactgagctatagggattctatttttgcaaccattaattatattccgtgtccttgataactcaggattgtagtacttgctctttaaaacagccttgaaatctttccattttttgctcgctgattgcaatacccaaggcttatattgatcctcaatggcaaaaagtgcctatgacacagtgttgttagcaccacaatacctagtttgtttatatatgacagtgcaggtgcaagttcaagatattaaagctgggatgtacctggacagttgtccatactttcatcttatttgcttctggtaccttgctccaattccttgcagctaaggatacatatgtgcctttcacaagggttccaataaaattggttaacttgcaagtctttaatccacaaggttgaccatatctattgaatttcaatctaatcttttggctaggatcatgctccttccacagcgatctcatcat
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| CDS seq | atgatgagatcgctgtggaaggagcatgatcctagccaaaagattagattgaaattcaatagatatggtcaaccttgtggattaaagacttgcaagttaaccaattttattggaacccttgtgaaaggcacatatgtatccttagctgcaaggaattggagcaaggtaccagaagcaaataagatgaaagtatggacaactgtccaggcactttttgccattgaggatcaatataagccttgggtattgcaatcagcgagcaaaaaatggaaagatttcaaggctgttttaaagagcaagtactacaatcctgagttatcaaggacacggaatataattaatggttgcaaaaatagaatccctatagctcagtgggtgtggttagtaaggcattggaagactaaagcagctacagagttggatgatgtgaattacaataatcatgcaccatcactttcatctagaaacaagaaaacacttccacgatcagagccatatagtaaagtgacatctgctcctctacaaaaacagagatttagatctcctcagctagaattgaacaaacaaacagagccatgtagtaaagtgacatctgctcctctacaaaaacaaagttttaaatctcctcggctagaattgaacaaacaagcaaagccatcttgtaaagtgacatctgctcctctacaaaaacagagatttaggtctcctcagctagaattgaacaaacaaacagagccatgtagtaaagtgacaccaccttgtcaacgaaaaaagaagcttcgatctcctccattagaattgaacaaggagaatatgccgccgccaactgttatccagcgcaaatcaaagaaaccagcaccatctgagctcaatctacaacacagaaaaagaaagtttcaaacaccactccatgaggagcttgaggtgttaactgctgttagacacatctcatctgaccaaggagacatatctgcaccaaggagacaaatacatgatctaacaaacaaggagaacataggacatgaagatgtacattctaggacaagaagtcttggaaaagccagcgctggttccttaagtgctatcaagttcagtaatagccaagttctaacaacttcacggttctag
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| Protein seq | MMRSLWKEHDPSQKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGTYVSLAARNWSKVPEANKMKVWTTVQALFAIEDQYKPWVLQSASKKWKDFKAVLKSKYYNPELSRTRNIINGCKNRIPIAQWVWLVRHWKTKAATELDDVNYNNHAPSLSSRNKKTLPRSEPYSKVTSAPLQKQRFRSPQLELNKQTEPCSKVTSAPLQKQSFKSPRLELNKQAKPSCKVTSAPLQKQRFRSPQLELNKQTEPCSKVTPPCQRKKKLRSPPLELNKENMPPPTVIQRKSKKPAPSELNLQHRKRKFQTPLHEELEVLTAVRHISSDQGDISAPRRQIHDLTNKENIGHEDVHSRTRSLGKASAGSLSAIKFSNSQVLTTSRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0009000 | OsLima_04g0009000.01 | Chr04 | 17309806 | 17313728 | - | NAM | ||
| CDS seq | atgatgagatcgctgtggaaggagcatgatcctagccaaaagattagattgaaattcaatagatatggtcaaccttgtggattaaagacttgcaagttaaccaattttattggaacccttgtgaaaggcacatatgtatccttagctgcaaggaattggagcaaggtaccagaagcaaataagatgaaagtatggacaactgtccaggcactttttgccattgaggatcaatataagccttgggtattgcaatcagcgagcaaaaaatggaaagatttcaaggctgttttaaagagcaagtactacaatcctgagttatcaaggacacggaatataattaatggttgcaaaaatagaatccctatagctcagtgggtgtggttagtaaggcattggaagactaaagcagctacagagttggatgatgtgaattacaataatcatgcaccatcactttcatctagaaacaagaaaacacttccacgatcagagccatatagtaaagtgacatctgctcctctacaaaaacagagatttagatctcctcagctagaattgaacaaacaaacagagccatgtagtaaagtgacatctgctcctctacaaaaacaaagttttaaatctcctcggctagaattgaacaaacaagcaaagccatcttgtaaagtgacatctgctcctctacaaaaacagagatttaggtctcctcagctagaattgaacaaacaaacagagccatgtagtaaagtgacaccaccttgtcaacgaaaaaagaagcttcgatctcctccattagaattgaacaaggagaatatgccgccgccaactgttatccagcgcaaatcaaagaaaccagcaccatctgagctcaatctacaacacagaaaaagaaagtttcaaacaccactccatgaggagcttgaggtgttaactgctgttagacacatctcatctgaccaaggagacatatctgcaccaaggagacaaatacatgatctaacaaacaaggagaacataggacatgaagatgtacattctaggacaagaagtcttggaaaagccagcgctggttccttaagtgctatcaagttcagtaatagccaagttctaacaacttcacggttctag
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| Protein seq | MMRSLWKEHDPSQKIRLKFNRYGQPCGLKTCKLTNFIGTLVKGTYVSLAARNWSKVPEANKMKVWTTVQALFAIEDQYKPWVLQSASKKWKDFKAVLKSKYYNPELSRTRNIINGCKNRIPIAQWVWLVRHWKTKAATELDDVNYNNHAPSLSSRNKKTLPRSEPYSKVTSAPLQKQRFRSPQLELNKQTEPCSKVTSAPLQKQSFKSPRLELNKQAKPSCKVTSAPLQKQRFRSPQLELNKQTEPCSKVTPPCQRKKKLRSPPLELNKENMPPPTVIQRKSKKPAPSELNLQHRKRKFQTPLHEELEVLTAVRHISSDQGDISAPRRQIHDLTNKENIGHEDVHSRTRSLGKASAGSLSAIKFSNSQVLTTSRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g52050 | SBH | 1.068280 | 0.475443 | 0.397885 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0229000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008320 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008950 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008750 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008390 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0490700 | SBH | 12.223387 | 29.1148535 | 42.150934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0018500 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
