Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsN22_01G003570 | OGI:01009140 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:2762522-2766699 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATCCCAAATTCCCAGCACCAGCAGCGCAGGCGGCATCGATCCTCGCCGCCGCCGCCGCGCTCTCCTCCTCCGCCAGATCCGCACCAGCGGCTAGGTTCTTCCCTCCAGCACGAGAGACGAGGTTTTCTTTGTTCAGAGGGATCCGGGCAGAGCCAGAGAGGGGGTTCTCCCGCGAACGCCGGCGATGGCGGAGCCGGAGGTACCGGGGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCCCTCCTCCGTGAGCTCGACCTGGTAAATCACACTCTCCGCGTGATCTTCCCTAGCGGTTATCCTCTCGATCCGTTTCCTGAATTACGCGTAAATTCCTTTTTTTAGTTATTTGTTGAACTATGGTCTAGATGTGCCCGTGTGCAAAGCTTGGATCTTTACTTTACCTACCATGAAGAGTATTCTGAAACCTCAAGGATGGCTATTGGTAGTATATTCAGAGACAAATTAGTTGATGTACCCATAATGGGAGTTGCAATTGATCTTTATTGTGACAAACACAGGGATCCAAAGTTTGTGGATAGCAGAATGCCAAGTGTGGAAGGCGGTCTTTTCAATTTTGTTTTGGAATTCCTGTAAAGAACAACTACTAGCTGCAAGGTTTAAGCACGTTAGCCCATAAGTGGTCACTGACCAGTAACCAGTCTACTCAAAGCAGTTAGAGATTATTGCTGTTAGGCAATTTGTATCTGTCCGGCACCTAGATCACAGTATCACATAACTACATTCGCTTTCGATTTCTAGCCAAACTAAGGGGAAAGGGGCCCATGTGATGTTTCTCTAGCAACGAATTGGTCCAAGTCCCTTAATTCGGTCTAAATTCCAGTCGTCTTTGTCTTGGCCATGGGCAGTTGCCTTAATGCTTTGCACAGTTAGGAGCCGCCTAATTGGTTATGATTTAAGTTCATAACAAAAACATGATAGCCTCCTGATATCTCCATTCTCAATTTACTAGTAACTTCTAAAAAAACATATAGCCTCATGCAAATATTTTTTTACTAGTCTTATCATGAAAATTGTACCTGTATGTATTATGTATTAAAACCAGTAACCATGCCTGGTTGCTAGCTGAAATATTTATTGTGGGAATTTAAGTTCACTTTGTGCCTTGACTGAGTTGACTCTTCAGGAAGAAGTAATATACTGAGTTGACTGAGTAGTAATTTGATGAGTTGCTTACTTGTGTGCCTTTGATTTTCTTTAGGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAATACAGACAATGAATTAGATAATGGTGAGTTTTCCTCAGTACTTATGTAATAAAGCTCTCAAGATAGCTAATTCATATTTTTCAGATGCAATATATTCATTATATGACAATTTTTATGTTTTTAGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGACGGTAGATGTGGCTAATTCTCAAGCCAACCTTTTTTTTTTCATACATCTCAATTTGTCGTTTAATTTTTACATTCTGACAGTTCGGAATAGGAATTCATGCCCTTCCTCAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAGCAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGACGGAAGGTATGCATTTTAGCTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTATCACCAGAAGAATTTCAGCCAACTCACATTCTGCCTTGAGATTTCTTAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTGTGTTGATTGCTACCTTTCCATTTGCATGTGTTTTCTCTGCATGAACTAATTCATGCCATGTCGTTCAACAAACTTGATATTGGTAAATACCTCCTTTCTGGTAAATTTCTGTATTGCTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTCCCTGTGAGCATTTCATTGATTTGAGTAAGATGTCTTCATAGTTCCATTCTGCAAACAACTAAACACCATGCACCGCTTAAATGCATTAGCTTATTGGCTAACTAGAGAAGCATCTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTATCATTTACATTTAGTATGCTTGCAATTTTATCTTTGTCTGAAATAACTTGACACACTTGTGCTGTCTTTTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGGTTGGCTTACAGCAATTCCTGATGCACTGGGTTTTGAGACACCAGTGTCTTGCAACATGTTATTTAAATCCTTAATTCTTGTTTCTACCACATGCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTGTAACCTTTGATGTGCTTCTTGTCCTACTGAGTTTGTCATTTCACGTGGCAGTTTTCTTTCAGAGTTTCAGAATGTAATAATTCAGCTAAGTTTTTTTTTTAGTCAGTTATGGGTACTCATTGTTTGTCTTTGTGTTAGTGAGTCAGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGCTGACTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTATGCTTGCTCCTGGAGTGGTGTCTTCAGGTTAAATTCTGCTCAACCATATATATCTGCTATTACCATCAAAATCTGCCCTTTGATGTGATTTATAGGACTAACATGTATTTCCAAAACTGGACAGACACTATATGCAGTACACCAACCCGTTTTAAATGTTTCTAGTTTAGTAGATATATGCATCAACCATTCAATTTTCATTTATTCATGATGGAGAACTGCAGCTTGCTCTATGACACCACACCATCCAGTTGTTTTTAAAATCTCCCTTGTGTAGAGTAAAAAATGTGAATCATAAACGGATTTAGTTAGAAATGATTAATAAGAACTAGGACGACTTTACTAGTAGGGAATCCTAACTGTTTTCACTATTATCATATAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGTAAATACACCATACAGAGTTATATATGCTAATTGCTTGACAATCAAATAGCAAACTTGGGTAATCTGTCTTGCTGCCAATCAACACTCTGCAGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTCTTGCCAATCACCTGTAATGACTTCCTCTCTGATCAGCTTAATTTCTCACATTGATCATGTTGCATCTTTACTGATCATGTATGCCCTTGTTTACCATTGCAACAGTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATTTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGGTTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAACTGAAAAGAATGCAAGTAATCTATACGATTAGTTCATCCGTGTTGCTTTCAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTAGAGAGGAGCATTCTGTAAAGGCTATTTCATTTTCAGTTAGCTGAACTAACTGATAGTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAACTGAACAAAATTATCATCTTTATTCTGTTCCTTG
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CDS seq | ATGCACCGCTTAAATGCATTAGCTTATTGGCTAACTAGAGAAGCATCTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGCTGACTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTATGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTCTTGCCAATCACCTGTAATGACTTCCTCTCTGATCAGCTTAATTTCTCACATTGATCATGTTGCATCTTTACTGATCATGTATGCCCTTGTTTACCATTGCAACAGTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATTTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGGTTGTTCATCTTCTGTATTCAGTCAAGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTAG
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Protein seq | MHRLNALAYWLTREASFFSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGTASCGGTFCAVAALCLMGFIQADLASNLQEPSSIDVCLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLSCQSPVMTSSLISLISHIDHVASLLIMYALVYHCNSMEVLQSFCTINSRIFTILTMDLPLFPCWKRKGWSHSAPNWGSSLLHCSLELVVHLLYSVKSCNIVLDNMIVK |
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Function | Geranylgeranyl transferase type-1 subunit beta [UniProtKB/Swiss-Prot:O80642] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_01G003570 | OsN22_01G003570_01 | Chr01 | 2762565 | 2766598 | + | NAM | ||
CDS seq | ATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGCTGACTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTATGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTCTTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATTTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG
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Protein seq | MLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGTASCGGTFCAVAALCLMGFIQADLASNLQEPSSIDVCLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLSCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_01G003570 | OsN22_01G003570_04 | Chr01 | 2764795 | 2766539 | + | NAM | ||
CDS seq | ATGCACCGCTTAAATGCATTAGCTTATTGGCTAACTAGAGAAGCATCTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGCTGACTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTATGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTCTTGCCAATCACCTGTAATGACTTCCTCTCTGATCAGCTTAATTTCTCACATTGATCATGTTGCATCTTTACTGATCATGTATGCCCTTGTTTACCATTGCAACAGTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATTTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGGTTGTTCATCTTCTGTATTCAGTCAAGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTAG
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Protein seq | MHRLNALAYWLTREASFFSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGTASCGGTFCAVAALCLMGFIQADLASNLQEPSSIDVCLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLSCQSPVMTSSLISLISHIDHVASLLIMYALVYHCNSMEVLQSFCTINSRIFTILTMDLPLFPCWKRKGWSHSAPNWGSSLLHCSLELVVHLLYSVKSCNIVLDNMIVK
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_01G003570 | OsN22_01G003570_03 | Chr01 | 2764795 | 2766598 | + | NAM | ||
CDS seq | ATGCACCGCTTAAATGCATTAGCTTATTGGCTAACTAGAGAAGCATCTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGCTGACTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTATGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTCTTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATTTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG
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Protein seq | MHRLNALAYWLTREASFFSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGTASCGGTFCAVAALCLMGFIQADLASNLQEPSSIDVCLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLSCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_01G003570 | OsN22_01G003570_02 | Chr01 | 2762565 | 2764329 | + | NAM | ||
CDS seq | ATGGCGGAGCCGGAGGTACCGGGGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCCCTCCTCCGTGAGCTCGACCTGGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAATACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGACGTTCGGAATAGGAATTCATGCCCTTCCTCAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAGCAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGACGGAAGGTATGCATTTTAG
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Protein seq | MAEPEVPGFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDLVNKDQIAKWILSFQVHPNTDNELDNGQFYGFCGSRTTQFPSTNMTFGIGIHALPQDPCHNGSHLASTYSALAILKIVGYDLANIDSKVLLSSMRNLQQPDGRYAF |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsN22_01G003570 | OsN22_01G003570_05 | Chr01 | 2762522 | 2766699 | + | IsoSeq | ||
CDS seq | CCCAAATTCCCAGCACCAGCAGCGCAGGCGGCATCGATCCTCGCCGCCGCCGCCGCGCTCTCCTCCTCCGCCAGATCCGCACCAGCGGCTAGGTTCTTCCCTCCAGCACGAGAGACGAGGTTTTCTTTGTTCAGAGGGATCCGGGCAGAGCCAGAGAGGGGGTTCTCCCGCGAACGCCGGCGATGGCGGAGCCGGAGGTACCGGGGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCCCTCCTCCGTGAGCTCGACCTGGTTAACAAGGATC
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Protein seq | PKFPAPAAQAASILAAAAALSSSARSAPAARFFPPARETRFSLFRGIRAEPERGFSRERRRWRSRRYRGSRASGTCCFWRLWRRSSPRTTPRRRSTTSPSPTSPSPAYPSSVSSTWLTRI |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
A3 | Chr01 | 2764067 | 2764177 | + | OsN22_01G003570_02 | OsN22_01G003570_01,OsN22_01G003570_02 | All |
A5 | Chr01 | 2765212 | 2765372 | + | OsN22_01G003570_01,OsN22_01G003570_04,OsN22_01G003570_03 | OsN22_01G003570_01,OsN22_01G003570_05,OsN22_01G003570_03,OsN22_01G003570_04 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 0.280848 | 3.428406 | 2.858830 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05680 | RBH | 0.166192 | 0.524606 | 0.411050 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003630 | RBH | 0.122565 | 1.692992 | 3.954034 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003460 | RBH | 0.294431 | 1.535562 | 0.965141 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003610 | RBH | 1.347394 | 23.056200 | 12.605496 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003290 | RBH | 0.045135 | 1.180108 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003510 | RBH | 3.617102 | 22.207834 | 10.573362 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0046700 | SBH | 9.59436 | 7.9674395 | 9.0453085 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003420 | RBH | 0.095892 | 0.424919 | 0.866245 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0048100 | RBH | 5.8668715 | 10.345772 | 22.733634 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003240 | RBH | 0.177765 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003350 | RBH | 0.153574 | 2.889673 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003530 | RBH | 0.306714 | 0.058413 | 0.113796 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003390 | RBH | 0.192026 | 0.896729 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003420 | RBH | 0.109494 | 21.563763 | 8.029791 |