Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKYG_01g0003350 OGI:01009140 | 16/16 KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) Chr01:2680008-2684285
Gene Symbol -
DNA seq

ACCCGTCCGCATCCCAAATTCCCAGCACCAGCAGCGCCCGCCGCCGCCGCCGCCGTCGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTTGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTAAGATCCCCGCTCTCCGCCTGATCTGCCCTAGCGGTTATCCTCTCGATCCGTTTCCTGAATTACGCGTAAATTCGTTTTTTTTTAGTTATTTGTTGAACTCTAGTCTAGACTAGATGTGCCCGTGTGCAAAGCTTGGATCTTTACTTTACCTTGTGTGGTCGCTTTGCTTGCATTTAGTAGAAGCAAAGTTGCATCTGTAGGAATAAAATCAATCAGCAGATTTGGTGCACTTATGGTACCATGAAGTATTTTGAAACCTCAAGGATGGCTATTGGTAGTATATTCAGAGATAAATTAGTTGCTGTATCCATAATGGGAGTTGCAATTGATCTTTATTGTGACAAACACAGGGATCCAAAGTTTGTGGATAGCAGAATGCCAAGTGTGGAAGGGTCTTTTCAATATTTTTTTTTTTTTGGAATTCCTGTAAAGAACAACCACTAGCTGCAAGGTTTAAGCACTTTAGCCCATAAGTGGTCACTGACCAGTAACCAGTCTACTCAAAGCAGTTAGAGATTATTGCGGTTAGGCAATTTGCATCTGTCCGGCAACTAGATCACAATATCACATAACTACATTCGCTTTCGATTTCTAGCCAAACTAAGAGGAAAGGGGCCCATGTGATGTTTCTGTAGCAACGAATTGGTCCACGTCCCTTAATTCGGTCTAAATTCCGTTCGTCTTTGTCTTGTCCATGGGCAGTTGCCTTAATGCTCTGCACAGTTAGGAGCCGCCTAGTTGGTTATGATTTAAGTTCATCATACTTGATGCCTTGCTCATGTAAACAACAAAAACATGATAGCCTCCTGATATCTCCATTCTCAAATTACTAGTAACTTCTAAAAAAACTTATAGCCTCATGCAAATATTTTTTTACCAGTCTTATCATGAAAATTGTACCTGTATGTATTATGTATTAAAACAAGTAACCATGCCTGGTTGCTAGCTGAAATATTTATTGTGGGAATTTAAGTTCACTTTGTGCCTTGACTGAGTTGACTCTTCAGGAAGAAGTAATATACTGAGTTGACTGAGTAGTAATTTGATGAGTTGTGTACTTGTTTGCCCTTTTATACTTTCTTTAGGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGTGAGTTTTCCTCAGTACTTATGTAATAAAGCTCTCAAGATAGCTAATTCATATTTTTCAGATGCAATATATTCATTATATGACAATTTATATGTTTTTAGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGTAGATGTGGCTAATTCTCAAGTCAACCCTTTTTTTTTTCACACATATCAATTTGTCATTTAATTTTTACATTCTGACAGTTTGAAATATGAATTCATGCCCTTCCTCAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTGTGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAACATTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGGTTGGCTTACAACAATTCCTGATGCACTTGGTTTTGAGACACCAGTGTTTTGCACCATGCTATTTAAAATCCTTAATTCTTGTTTCTACCACATGCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTTTAACCTTTGATGTGCTTCTTGTCCTACTGAGTTTGTCATTTCATGTGGCAGTTTTCTTCAGAGTTTCAGAATGCAATAATTCAGCTAAATTTTTGTTTTATTTTTTTGGAGTCGGTTATGGGTACTCATTGTTTGTCTTTGTGTTAGTGAGTCAGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGGTTAAATTCTGCTCAACCATATATATCTGCTATTACCATCAAAATCTGCCCTTTGATGTGATTTATAGGACTAACATATATTTCCAAAACTGGACAGACACTATATGCAGTACACCAACCCGTTTTAAATGTTTCTAATTTAGTAGATATATGCATCAACCATTCAATTTTCATTTATTCATGATGGAGAAGTGCAGCTTGCTCAATGACACCACACCATCCAGTTGTTTTTAAAATCTCCCTTATGTAGAGTAAAAAAAATGTGAATCATAAACGGATTTAGTTAGAAATGATTAATAAGGACTAGGACGACTTTACTAGTAGGGAATCTTAACTGTTTTCACTATTATCATATAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGTAAATACACCATTCAGAGTTATATATACTAATTGCCTGACAATCAAATAGCAAATTTGGGTAATCTGTCTTGCTGCCAATCAACACTCTGCAGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTGTAATGACTTCCTCTCTAATCAGCTTAATTTCTCACATTGATCAAGTTGCATCTTTACTGATCATGTATGCCCTTGTTTACCATTGCAACAGTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTTTGTAAAGGCTATTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAATTATCATCTTTATTCTGTTTCTTG

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CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL

Function Geranylgeranyl transferase type-1 subunit beta [UniProtKB/Swiss-Prot:O80642]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKYG_01g0003350 OsKYG_01g0003350.01 Chr01 2680012 2684184 + NAM
CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL

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Gene Transcript Chromosome Start End Strand Source
OsKYG_01g0003350 OsKYG_01g0003350.02 Chr01 2680056 2684184 + NAM
CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGRYAF

Gene Transcript Chromosome Start End Strand Source
OsKYG_01g0003350 OsKYG_01g0003350.03 Chr01 2680008 2684285 + IsoSeq
CDS seq

CCGTCCGCATCCCAAATTCCCAGCACCAGCAGCGCCCGCCGCCGCCGCCGCCGTCGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTTGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATC

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Protein seq

PSASQIPSTSSARRRRRRRRAELSSSARSALAAWLFSPARETRVPRRASEGRRWRSRSSRSSRASGTCCFWRLWRRSSPRTTPRRRSTTSPSPTSPSPAYLSFVSSTVLTRI

OsKYG_01g0003350.03OsKYG_01g0003350.02OsKYG_01g0003350.01AS2680000 bp2681000 bp2682000 bp2683000 bp2684000 bp2685000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr01 2681767 2682502 + OsKYG_01g0003350.03 OsKYG_01g0003350.01,OsKYG_01g0003350.03 All
RI Chr01 2681767 2682665 + OsKYG_01g0003350.02 OsKYG_01g0003350.02,OsKYG_01g0003350.03 All

Expression

Leaf Root Panicle
FPKM 0.153574 2.889673 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0150100 RBH 1.321704 0.460248 2.773793
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g05680 RBH 0.166192 0.524606 0.411050
Nipponbare | IRGSP 1.0 | RAP-db Os01g0150100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0003630 RBH 0.122565 1.692992 3.954034
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0003460 RBH 0.294431 1.535562 0.965141
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0003610 RBH 1.347394 23.056200 12.605496
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0003290 RBH 0.045135 1.180108 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003510 RBH 3.617102 22.207834 10.573362
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0046700 RBH 9.59436 7.9674395 9.0453085
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0003420 RBH 0.095892 0.424919 0.866245
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0048100 RBH 5.8668715 10.345772 22.733634
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0003240 RBH 0.177765 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0031990 SBH 1.267882 3.387155 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0003530 RBH 0.306714 0.058413 0.113796
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0003390 RBH 0.192026 0.896729 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G003570 RBH 0.280848 3.428406 2.858830
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0003420 RBH 0.109494 21.563763 8.029791
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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