Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_01g0003420 OGI:01009140 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr01:2652775-2657037
Gene Symbol -
DNA seq

GTCCGCATCCCAAATTCCCAGCACCAGCAGCGCCCGCCGCCGCCGCCGCCGTCGCCGTGCCGAGCTCTCCTCCTCCGCCAGATCCGCACTAGCGGCTCGGTTATTCTCTCCGGCACGAGAGACGAGGGTTCCCCGGCGAGCGAGCGAGGGCCGGCGATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTAAGATCCCCGCTCTCCGCCTGATCTGCCCTAGCGGTTATCCTCTCGATCCGTTTCCTGAATTACGCGTAAATTCGTTTTTTTTTAGTTATTTGTTGAACTCTAGTCTAGACTAGATGTGCCCGTGTGCAAAGCTTGAATCTTTACTTTACCTTGTGTGGTCGCTTTGCTTGCATTTAGTGGAAGCAAAGTTGCATCTGTAGGAATAAAATCAATCAGCAGATTTGGTGCACTTATGGTACCATGAAGTATTTTGAAACCTCAAGGATGGCTATTGGTAGTATATTCAGAGATAAATTAGTTGCTGTATCCATAATGGGAGTTGCAATTGATCTTTATTGTGACAAACACAGGGATCCAAAGTTTGTGGATAGCAGAATGCCAAGTGTGGAAGGGTCTTTTCAATATTTTTTTTTTTGGAATTCCTGTAAAGAACAACTACTAGCTGCAAGGTTTAAGCACTTTAGCCCATAAGTGGTCACTGACCAGTAACCAGTCTACTCAAAGCAGTTAGAGATTATTGCGGTTAGGCAATTTGCATCTGTCCGGCAACTAGATCACAATATCACATAACTACATTTGCTTTCGATTTCTAGCCAAACTAAGAGGAAAGGGGCCCATGTGATGTTTCTGTAGCAACGAATTGGTCCACGTCCCTTAATTCGGTCTAAATTCCATTCGTCTTTGTCTTGTCCATGGGCAGTTGCCTTAATGCTCTGCACAGTTAGGAGCCGCCTAGTTGGTTATGATTTAAGTTCATCATACTTGATGCCTTGCTCATGTAAACAACAAAAACATGATAGCCTCCTGGTATCTCCATTCTCAAATTACTAGTAACTTCTAAAAAAACCTATAGCCTCATGCAAATATTTTTTTACCAGTCTTATCATGAAAATTGTACCTGTATGTATTATGTATTAAAACAAGTAACCATGCCTGGTTGCTAGCTGAAATATTTATTGTGGGAATTTAAGTTCACTTTGTGCCTTGACTGAGTTGACTCTTCAGGAAGAAGTAATATACTGAGTTGACTGAGTAGTAATTTGATGAGTTGTGTACTTGTTTGCCCTTTTATACTTTCTTTAGGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGTGAGTTTTCCTCAGTACTTATGTAATAAAGCTCTCAAGATAGCTAATTCATATTTTTCAGATGCAATATATTCATTATATGACAATTTATATGTTTTTAGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGTAGATGTGGCTAATTCTCAAGTCAACCCTTTTTTTTTCACACATATCAATTTGTCATTTAATTTTTACATTCTGACAGTTTGAAATATGAATTCATGCCCTTCCTCAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAGTTTTGGTCTCCATGCTAATTATTCTTGTAATTATCCTCCAAAAATATCTATGCATTTACATCTGCTACCTGTGTTTAGTTTTAACTGTACCACCAAAAGAGTTTCAGCCAACTCACATTCTGTCTTAAGATTTCATAATACCCCATAGTTGGCCCACCTCCTTGATTATTTTTTGTATGTGTTGATTGCTACCTTTCCATTTGCATATGTTTTCTCTGCATGAATTTAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGGTCAGTCTTCAAGCTTGTTCAATCAGAATGTTAATTAATGTGCTGTGATCCTAACTGCATGCATGTGATAGAGGTGTTTGTGCATGTGCAATGCAATCTTGCTTGCCTATGAGCATTTCATTGATTTCACTAAGATGGCTTCCATGGTTCCATTCTGCAAACAACTAAACTCCACGCACCGCTTAAATGCATTATCTTATTGGCCAACTTGAGAAGCATTTTTTTTTTAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGGTGGGTTGCACTGTCATTTATATTTAGTATGCTTTCAATTTTATCTTTGTTTGAAATAACTTGACACACTTGTGTTGTCTTCTCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGGTTGGCTTACAACAATTCCTGATGCACTTGGTTTTGAGACACCAGTGTTTTGCACCATGCTATTTAAAATCCTTAATTCTTGTTTCTACCACATGCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTACAGCTTCTTTTAACCTTTGATGTGCTTCTTGTCCTACTGAGTTTGTCATTTCATGTGGCAGTTTTCTTCAGAGTTTCAGAATGCAATAATTCAGCTAAATTTTTGTTTTATTTTTTTGGAGTCGGTTATGGGTACTCATTGTTTGTCTTTGTGTTAGTGAGTCAGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGGTTAAATTCTGCTCAACCATATATATCTGCTATTACCATCAAAATCTGCCCTTTGATGTGATTTATAGGACTAACATATATTTCCAAAACTGGACAGACACTATATGCAGTACACCAACCCGTTTTAAATGTTTCTAATTTAGTAGATATATGCATCAACCATTCAATTTTCATTTATTCATGATGGAGAAGTGCAGCTTGCTCAATGACACCACACCATCCAGTTGTTTTTAAAATCTCCCTTATGTAGAGTAAAAAAAATGTGAATCATAAACGGATTTAGTTAGAAATGATTAATAAGGACTAGGACGACTTTACTAGTAGGGAATCTTAACTGTTTTCACTATTATCATATAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGTAAATACACCATTCAGAGTTATATATACTAATTGCCTGACAATCAAATAGCAAACTTGGGTAATCTGTCTTGCTGCCAATCAACACTCTGCAGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTGTAATGACTTCCTCTCTAATCAGCTTAATTTCTCACATTGATCAAGTTGCATCTTTACTGATCATGTATGCCCTTGTTTACCATTGCAACAGTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAGCTTGGAATTGATTGTTCATCTTCTGTATTCAGTCAAGTTATGGTGTTCTTTAAAGTCCATTCTTGTAATCTAATACAACATACAGCTGAAAAGAATGCAAGTAATCTATAGAGTTCGTTTGTTTGTTTGGGTAGGCAGGTCATGCAACATTGTCTTGGATAATATGATTGTGAAGTACAGAGGAGCATTCTGTAAAGGCTTTCATTTTCAGTTAGTCGAACTAACTGATATTCTGATAGACAGTTGAGTTGGCTGAGCAGTTCTATCACTTGGAAAGCTATTGAAAACAACTCATGTAACAGCTGAACAAAATTATCATCTTTATTCTGTT

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CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSHAMSFDKLDIGKYLLSGISLYCCFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL

Function Geranylgeranyl transferase type-1 subunit beta [UniProtKB/Swiss-Prot:O80642]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0003420 OsIR64_01g0003420.03 Chr01 2652819 2656941 + NAM
CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGGTATGCATTTTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGRYAF

Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0003420 OsIR64_01g0003420.01 Chr01 2652775 2657037 + NAM
CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL

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Gene Transcript Chromosome Start End Strand Source
OsIR64_01g0003420 OsIR64_01g0003420.02 Chr01 2652819 2656941 + NAM
CDS seq

ATGGCGGAGCCGGAGCAGCCGGAGTTCGCGCGCGAGCGGCACGTGCTGTTTCTGGAGGCTATGGCGTCGGAGCTCCCCGCGGACTACGCCTCGCAGGAGGTCAACCACCTCACCCTCGCCTACTTCGCCGTCGCCGGCCTATCTCTCCTTCGTGAGCTCGACAGTGTTAACAAGGATCAAATAGCCAAATGGATTTTGTCTTTTCAAGTACATCCTAAGACAGACAATGAATTAGATAATGGACAATTTTATGGATTCTGTGGCTCTAGAACAACTCAGTTTCCCTCAACTAACATGAAGGACCCTTGCCACAATGGTAGTCATCTTGCAAGCACTTATTCTGCCCTTGCTATCCTGAAGATTGTAGGTTATGATTTAGCAAACATTGATAACAAGGTTCTTTTGTCCTCAATGAGAAACCTCCAACAGCCAGATGGAAGTCATGCCATGTCGTTCGACAAACTTGATATTGGTAAATACCTCCTTTCTGGTATATCTCTGTATTGTTGCTTCATGCCTACTCATATTGGTGCGGAAACAGACCTACGCTTTGTATACTGTGCAGCTGCAATCTGCTCGATGCTAAAAGATTGGACAGGAATGGACAAGGAAAAGGCCAAGCAATACATTCTTAGTTGCCAGTCATACGATGGTGGCTTTGGCTTGGTTCCTGGTTCAGAATCTCATGGTGGAGGGACATTCTGTGCTGTTGCAGCTTTGTGCCTGATGGGTTTCATTCAAGTTGATTTGGCATCAAATTTACAAGAACCATCATCAATTGATGTACGCTTGCTCCTGGAGTGGTGTCTTCAGAGACAAGCGGCAGACGGAGGTTTTCAAGGAAGAAGGAACAAATCCAGTGACACATGCTATGCATTTTGGATTGGAGGTGTCCTAAAGATCATCGGTGCATACCGCTTCATTGATCATGGTGCTTTGCGAAGTTTTTTGCTCTATTGCCAATCACCTTATGGAGGTTTTACAAAGTTTTTGTACGATCAATTCCCGGATATCTACCATTCTTACTATGGACTTGCCGCTCTTTCCTTGCTGGAAGAGGAAGGGCTGGAGCCACTCTGCACCGAACTGGGGATCCTCTCTGCTGCATTGTAG

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Protein seq

MAEPEQPEFARERHVLFLEAMASELPADYASQEVNHLTLAYFAVAGLSLLRELDSVNKDQIAKWILSFQVHPKTDNELDNGQFYGFCGSRTTQFPSTNMKDPCHNGSHLASTYSALAILKIVGYDLANIDNKVLLSSMRNLQQPDGSHAMSFDKLDIGKYLLSGISLYCCFMPTHIGAETDLRFVYCAAAICSMLKDWTGMDKEKAKQYILSCQSYDGGFGLVPGSESHGGGTFCAVAALCLMGFIQVDLASNLQEPSSIDVRLLLEWCLQRQAADGGFQGRRNKSSDTCYAFWIGGVLKIIGAYRFIDHGALRSFLLYCQSPYGGFTKFLYDQFPDIYHSYYGLAALSLLEEEGLEPLCTELGILSAAL

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OsIR64_01g0003420.03OsIR64_01g0003420.02OsIR64_01g0003420.01AS2653000 bp2654000 bp2655000 bp2656000 bp2657000 bp2658000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
SE Chr01 2654666 2655208 + OsIR64_01g0003420.02 OsIR64_01g0003420.02,OsIR64_01g0003420.01 All

Expression

Leaf Root Panicle
FPKM 0.095892 0.424919 0.866245

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0150100 RBH 1.321704 0.460248 2.773793
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g05680 RBH 0.166192 0.524606 0.411050
Nipponbare | IRGSP 1.0 | RAP-db Os01g0150100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0003630 RBH 0.122565 1.692992 3.954034
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0003460 RBH 0.294431 1.535562 0.965141
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0003610 SBH 1.347394 23.056200 12.605496
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0003290 SBH 0.045135 1.180108 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0003510 RBH 3.617102 22.207834 10.573362
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0046700 SBH 9.59436 7.9674395 9.0453085
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0048100 RBH 5.8668715 10.345772 22.733634
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0003240 RBH 0.177765 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0003350 RBH 0.153574 2.889673 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0003530 RBH 0.306714 0.058413 0.113796
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0003390 RBH 0.192026 0.896729 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G003570 RBH 0.280848 3.428406 2.858830
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0003420 RBH 0.109494 21.563763 8.029791
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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