Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0333900 | OGI:12064700 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:23626232-23627926 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACAAAACTTCTTCTTGTAGTAGCAGAAGTACAGAATAGTGTAGTAGTAGTACATTGGGAGTAGTAGTACGAGAAGCTAGCCGTCCGATGAGAAAACGAATGCTCCTCCACGTGGCCTGACGGAGACCGTCGTTTTCTGATCGGACGGCTGAGATGCGGGCGTTGACCGTTGACTCGCCGCCTCGGAATCCGAGACGAGGTCGTCGCGCCTCGCGCCTGGGCACGCGTCCTCCCCGCCATTAAAGAGCCAGCGAGCTGTGCAGGCCGAGCATTTATCTCGCCATTACTGCGCCTCGCTCTCCACCCAGGCCCACCTACCTCTCCACCCCACCCGGATCGGATCGGATCTCGGCGCGCAGCCGGCGGCGAGGCCTACCGGCTGAGCCGGTCCGGCGAGAGGAGGGCCTCGGGGTCGCCGCACCGGAGCCGGCTGGACGCGGCGGCGGCGGCGCTGGCGCGCCTCGCCGCGGCGAGGATGGAGGGTGGCTCTGACGCGAGCGACATGAAGAACCCGCCTCCGGGGGCGGTGGCGCCGCCGGGGCCGGTGCCGCCGCGGCGGCGGGAGAACGGGGAGGATTTCGCGGCGGCGGAGCGGTAGGAGCGGAAGGAGAAGACGCGGGAGGCGGCGGCGGCGCCGCCTCCGCCGCCGAACGGGGATGGCCAGCGCTTGCTCCAGAAGCTGCTGCGGCCGCCGCGGTTTGGGCCGTCCGCGCCGCCGCCGCCGCCGCCGATGTTGAGGCGGTAGCGCCACGGTGGGGACGCGGTGGAGGGGGCCTCCACGGCGAGGAGGTGGCGCTCGAAGCCGAAGGAGTAGGAGCGCTTGAGGAGGAAATCGTCTCTCGGGCCGACGTGGTCCGGGCTTGCCGGGGTGATCTCCGCCGGCGCGGCGGAGGGGTCGGCGGCGGCGTGGGGTGGTTGCGGGACGGGGTGGAAGAAGAGGAGGTCGTCGAGGCTGGGGCGCACGCGGCGGGCGGCGCGGACCGGGGAGGCGACCGGGGGCGGGAGCGCGACGGCGGCGCGGCAGAGCGGGCACGAGGCGTGCGCGCGGAGCCAGACGTCGATGCAGTCCGCGTGGAACGCGTGCGCGCAGAGCGGCAGCGCGCGGAGCTCGTCGCCGTCGGCGAACTCGAGCAGGCACACGGCGCAGTCGCGCGCGGCGGTGTCGGCTCCGCCTCCCCCGCCCCCGCCGCGCGCCGCCATCGCCGACGACTTGAGGTACTGCGCCGACGGCAGCGACTTGATGGCGGCGTCGTCGAGGCCGTACGGCGAGAAGGTGTGGTAGTAGTTGTCGTAGGTGGTGAACGTCGCGAACGAGTCGTCGGCGGGGGAGCCCGGGATCATGAGCAGCCGCCGCCTCCTCCTCCTCCGCCACCGCCGCCTCGCCGCCCTGAACACCCGGCTCACCAGCCTCGCGTACAGCACCACCAGCAGCGCCGCCCCGACCACCGCCAGCATCGCGATGAGCGGCGGGCTCAGGCTGCTCGACGCCGCGCCCCGCCGTCCGCCCGCGAACTCCCGCTCCGCCACACTCCCCGGCACCGGGGCTGGCGCCGGCGCTGGCACCGGCGACGTCGCCGGGTTCGGAGCAGGCGGCGAGCTAATGCCACCCCCTTCAAACATCGCAGCATACGGCGATGGCGCCGGCGACGGCGACACAGCCGGAGCCGGTGCCGGCGGCGGCCGGAGCGCGCGCAT
More
|
||||||||||
| CDS seq | ATGCGCGCGCTCCGGCCGCCGCCGGCACCGGCTCCGGCTGTGTCGCCGTCGCCGGCGCCATCGCCGTATGCTGCGATGTTTGAAGGGGGTGGCATTAGCTCGCCGCCTGCTCCGAACCCGGCGACGTCGCCGGTGCCAGCGCCGGCGCCAGCCCCGGTGCCGGGGAGTGTGGCGGAGCGGGAGTTCGCGGGCGGACGGCGGGGCGCGGCGTCGAGCAGCCTGAGCCCGCCGCTCATCGCGATGCTGGCGGTGGTCGGGGCGGCGCTGCTGGTGGTGCTGTACGCGAGGCTGGTGAGCCGGGTGTTCAGGGCGGCGAGGCGGCGGTGGCGGAGGAGGAGGAGGCGGCGGCTGCTCATGATCCCGGGCTCCCCCGCCGACGACTCGTTCGCGACGTTCACCACCTACGACAACTACTACCACACCTTCTCGCCGTACGGCCTCGACGACGCCGCCATCAAGTCGCTGCCGTCGGCGCAGTACCTCAAGTCGTCGGCGATGGCGGCGCGCGGCGGGGGCGGGGGAGGCGGAGCCGACACCGCCGCGCGCGACTGCGCCGTGTGCCTGCTCGAGTTCGCCGACGGCGACGAGCTCCGCGCGCTGCCGCTCTGCGCGCACGCGTTCCACGCGGACTGCATCGACGTCTGGCTCCGCGCGCACGCCTCGTGCCCGCTCTGCCGCGCCGCCGTCGCGCTCCCGCCCCCGGTCGCCTCCCCGGTCCGCGCCGCCCGCCGCCGCTCCTACTCCTTCGGCTTCGAGCGCCACCTCCTCGCCGTGGAGGCCCCCTCCACCGCGTCCCCACCGTGGCGCTACCGCCTCAACATCGGCGGCGGCGGCGGCGGCGCGGACGGCCCAAACCGCGGCGGCCGCAGCAGCTTCTGGAGCAAGCGCTGGCCATCCCCGTTCGGCGGCGGAGGCGGCGCCGCCGCCGCCTCCCGCGTCTTCTCCTTCCGCTCCTACCGCTCCGCCGCCGCGAAATCCTCCCCGTTCTCCCGCCGCCGCGGCGGCACCGGCCCCGGCGGCGCCACCGCCCCCGGAGGCGGGTTCTTCATGTCGCTCGCGTCAGAGCCACCCTCCATCCTCGCCGCGGCGAGGCGCGCCAGCGCCGCCGCCGCCGCGTCCAGCCGGCTCCGGTGCGGCGACCCCGAGGCCCTCCTCTCGCCGGACCGGCTCAGCCGGTAG
More
|
||||||||||
| Protein seq | MRALRPPPAPAPAVSPSPAPSPYAAMFEGGGISSPPAPNPATSPVPAPAPAPVPGSVAEREFAGGRRGAASSSLSPPLIAMLAVVGAALLVVLYARLVSRVFRAARRRWRRRRRRRLLMIPGSPADDSFATFTTYDNYYHTFSPYGLDDAAIKSLPSAQYLKSSAMAARGGGGGGGADTAARDCAVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAVALPPPVASPVRAARRRSYSFGFERHLLAVEAPSTASPPWRYRLNIGGGGGGADGPNRGGRSSFWSKRWPSPFGGGGGAAAASRVFSFRSYRSAAAKSSPFSRRRGGTGPGGATAPGGGFFMSLASEPPSILAAARRASAAAAASSRLRCGDPEALLSPDRLSR |
||||||||||
| Function | RING-H2 finger protein ATL65 [UniProtKB/Swiss-Prot:Q67YI6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0333900 | OsMH63_12T0333900-mRNA-1 | Chr12 | 23626232 | 23627926 | - | maker | ||
| CDS seq | ATGCGCGCGCTCCGGCCGCCGCCGGCACCGGCTCCGGCTGTGTCGCCGTCGCCGGCGCCATCGCCGTATGCTGCGATGTTTGAAGGGGGTGGCATTAGCTCGCCGCCTGCTCCGAACCCGGCGACGTCGCCGGTGCCAGCGCCGGCGCCAGCCCCGGTGCCGGGGAGTGTGGCGGAGCGGGAGTTCGCGGGCGGACGGCGGGGCGCGGCGTCGAGCAGCCTGAGCCCGCCGCTCATCGCGATGCTGGCGGTGGTCGGGGCGGCGCTGCTGGTGGTGCTGTACGCGAGGCTGGTGAGCCGGGTGTTCAGGGCGGCGAGGCGGCGGTGGCGGAGGAGGAGGAGGCGGCGGCTGCTCATGATCCCGGGCTCCCCCGCCGACGACTCGTTCGCGACGTTCACCACCTACGACAACTACTACCACACCTTCTCGCCGTACGGCCTCGACGACGCCGCCATCAAGTCGCTGCCGTCGGCGCAGTACCTCAAGTCGTCGGCGATGGCGGCGCGCGGCGGGGGCGGGGGAGGCGGAGCCGACACCGCCGCGCGCGACTGCGCCGTGTGCCTGCTCGAGTTCGCCGACGGCGACGAGCTCCGCGCGCTGCCGCTCTGCGCGCACGCGTTCCACGCGGACTGCATCGACGTCTGGCTCCGCGCGCACGCCTCGTGCCCGCTCTGCCGCGCCGCCGTCGCGCTCCCGCCCCCGGTCGCCTCCCCGGTCCGCGCCGCCCGCCGCCGCTCCTACTCCTTCGGCTTCGAGCGCCACCTCCTCGCCGTGGAGGCCCCCTCCACCGCGTCCCCACCGTGGCGCTACCGCCTCAACATCGGCGGCGGCGGCGGCGGCGCGGACGGCCCAAACCGCGGCGGCCGCAGCAGCTTCTGGAGCAAGCGCTGGCCATCCCCGTTCGGCGGCGGAGGCGGCGCCGCCGCCGCCTCCCGCGTCTTCTCCTTCCGCTCCTACCGCTCCGCCGCCGCGAAATCCTCCCCGTTCTCCCGCCGCCGCGGCGGCACCGGCCCCGGCGGCGCCACCGCCCCCGGAGGCGGGTTCTTCATGTCGCTCGCGTCAGAGCCACCCTCCATCCTCGCCGCGGCGAGGCGCGCCAGCGCCGCCGCCGCCGCGTCCAGCCGGCTCCGGTGCGGCGACCCCGAGGCCCTCCTCTCGCCGGACCGGCTCAGCCGGTAG
More
|
|||||||
| Protein seq | MRALRPPPAPAPAVSPSPAPSPYAAMFEGGGISSPPAPNPATSPVPAPAPAPVPGSVAEREFAGGRRGAASSSLSPPLIAMLAVVGAALLVVLYARLVSRVFRAARRRWRRRRRRRLLMIPGSPADDSFATFTTYDNYYHTFSPYGLDDAAIKSLPSAQYLKSSAMAARGGGGGGGADTAARDCAVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAVALPPPVASPVRAARRRSYSFGFERHLLAVEAPSTASPPWRYRLNIGGGGGGADGPNRGGRSSFWSKRWPSPFGGGGGAAAASRVFSFRSYRSAAAKSSPFSRRRGGTGPGGATAPGGGFFMSLASEPPSILAAARRASAAAAASSRLRCGDPEALLSPDRLSR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.4976225 | 8.2367535 | 10.6987915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0620100 | RBH | 0.0 | 0.423502 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g40460 | RBH | 0.000000 | 0.0 | 0.133367 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0620100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0019500 | RBH | 0.0 | 0.0 | 0.404200 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0019620 | RBH | 0.0 | 0.661225 | 0.196818 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0019940 | RBH | 0.0 | 0.0 | 0.204224 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019260 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0018870 | RBH | 0.0 | 0.0 | 0.697569 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0018740 | RBH | 0.059689 | 0.0 | 0.147780 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0364000 | RBH | 1.626885 | 3.029201 | 7.767401 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0018990 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019220 | RBH | 0.111778 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019170 | RBH | 0.227046 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019350 | RBH | 0.0 | 0.934752 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G018990 | RBH | 0.0 | 0.0 | 0.877790 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0018670 | RBH | 0.0 | 0.0 | 0.463373 |
