Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0620100 | OGI:12067820 | 15/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:26420683-26421144 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAAAGGATTACGTGCTGATCGCCGCATCCATGGCGGCGCTGGTGGCGATCTCCGCCGTCATGCTGGCCTGCTCCAACCGCCGGCGACGGCGGCGGCGGCGGTCACCGTCGCAGCGGAGCATCGACGACGTGGAGCTCGGCCGGGCGGCGGGGCTGGACGAGGCCGTCCTGGCGGAGTACCCGACGACGGTGTACAGCTGCTCGTCGTCGTCGGCGGCGGTGCCGGAGGAGGCGGCGGCGGCGGCGGTTGATGCCGGCGATGGCACGGGGTGCGCGGTGTGCCTGGCTGAGTACGAGGACGGCGACGAGCTCCGGCGGCTGCCGGGCTGCGGCCACGCGTTCCACCGGCGGTGCGTCGACGAGTGGCTGCGGCGTCGGCCCACCTGCCCGGTCTGCCGGTCGTCACCGCCGGCGAGGGGCGCTGCCGCCGCCGCCGCCGCTGCCGGTGGTCCATCGTGA
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| CDS seq | ATGGCAAAGGATTACGTGCTGATCGCCGCATCCATGGCGGCGCTGGTGGCGATCTCCGCCGTCATGCTGGCCTGCTCCAACCGCCGGCGACGGCGGCGGCGGCGGTCACCGTCGCAGCGGAGCATCGACGACGTGGAGCTCGGCCGGGCGGCGGGGCTGGACGAGGCCGTCCTGGCGGAGTACCCGACGACGGTGTACAGCTGCTCGTCGTCGTCGGCGGCGGTGCCGGAGGAGGCGGCGGCGGCGGCGGTTGATGCCGGCGATGGCACGGGGTGCGCGGTGTGCCTGGCTGAGTACGAGGACGGCGACGAGCTCCGGCGGCTGCCGGGCTGCGGCCACGCGTTCCACCGGCGGTGCGTCGACGAGTGGCTGCGGCGTCGGCCCACCTGCCCGGTCTGCCGGTCGTCACCGCCGGCGAGGGGCGCTGCCGCCGCCGCCGCCGCTGCCGGTGGTCCATCGTGA
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| Protein seq | MAKDYVLIAASMAALVAISAVMLACSNRRRRRRRRSPSQRSIDDVELGRAAGLDEAVLAEYPTTVYSCSSSSAAVPEEAAAAAVDAGDGTGCAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPARGAAAAAAAAGGPS |
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| Function | RING-H2 finger protein ATL65 [UniProtKB/Swiss-Prot:Q67YI6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0620100 | Os12t0620100-00 | Chr12 | 26420683 | 26421144 | + | irgsp1_rep | ||
| CDS seq | ATGGCAAAGGATTACGTGCTGATCGCCGCATCCATGGCGGCGCTGGTGGCGATCTCCGCCGTCATGCTGGCCTGCTCCAACCGCCGGCGACGGCGGCGGCGGCGGTCACCGTCGCAGCGGAGCATCGACGACGTGGAGCTCGGCCGGGCGGCGGGGCTGGACGAGGCCGTCCTGGCGGAGTACCCGACGACGGTGTACAGCTGCTCGTCGTCGTCGGCGGCGGTGCCGGAGGAGGCGGCGGCGGCGGCGGTTGATGCCGGCGATGGCACGGGGTGCGCGGTGTGCCTGGCTGAGTACGAGGACGGCGACGAGCTCCGGCGGCTGCCGGGCTGCGGCCACGCGTTCCACCGGCGGTGCGTCGACGAGTGGCTGCGGCGTCGGCCCACCTGCCCGGTCTGCCGGTCGTCACCGCCGGCGAGGGGCGCTGCCGCCGCCGCCGCCGCTGCCGGTGGTCCATCGTGA
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| Protein seq | MAKDYVLIAASMAALVAISAVMLACSNRRRRRRRRSPSQRSIDDVELGRAAGLDEAVLAEYPTTVYSCSSSSAAVPEEAAAAAVDAGDGTGCAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPARGAAAAAAAAGGPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0620100 | RBH | 0.0 | 0.423502 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42530 | RBH | 0.0 | 0.320759 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0648600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021170 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021250 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021610 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020920 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020570 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0333900 | RBH | 2.4976225 | 8.2367535 | 10.6987915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020440 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0384900 | RBH | 0.1852085 | 1.2551215 | 0.0921985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0020700 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020920 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020840 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021120 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020590 | RBH | 0.000000 | 0.000000 | 0.405072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020370 | RBH | 0.000000 | 0.000000 | 0.000000 |
