Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0648600 | OGI:03071630 | 13/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:25135397-25136081 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCCAGAAGCCTCTGCCTCGCCGCGACCGCGAACGCGGAGCGCGCGCCCCACACGGAGACGACGCGGCGGCCGCGGCGCGAACGCGCCCTGCAGGTTTGCTCGCGTACGCCGGTGTGGCGGGATGATGGACGTCATGGACACCGAGGAGGCGGTTCACCTCGTGGTCGTCGGGGTGGTGGCCGTGGGGGCGGTCGTCTTCCTCCTCGCCGCCGCCGCCTCGGGGGCGTGCGGTTGCGCCGCCGCGTTCCCGGCCGCCCGGTGGAGGAAGAGGGCGCAGGTGGGCGACGACGACGACGATGTCGAGAGCGCGCTCGGGGGCGCCACCACGGTCACGACGTACGAGCAGGCGGCGGCGGCGTCGTCGTCTTCGCCGGCGGCAGGGGCAGCGGCGGAGGGAGCGGACACGTGCGCGATCTGCTGTCAGGAATACTCCGGCGCCGACAAGGTGCGGCGGGTGGTGCGGTGCAGCCATTTCTTCCACGCGGGGTGCGTCGACGGTTGGCTCCGGGAGAAGCGGAATTGCCCGCTGTGCCGCGCCGTGCTGTCGTCGTTGCCGCCGCTTCCCAACCCTGGCTGCCGCCGCGGACGAGCCGCCCCGCCGTGTCCGCCGCCGCTGCCGCCACCGTTGTCGTCGGCTAATTACTTATCAGGATTTTGCAGATCTCATTTTGTTTTGGATTATTGA
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| CDS seq | ATGATGGACGTCATGGACACCGAGGAGGCGGTTCACCTCGTGGTCGTCGGGGTGGTGGCCGTGGGGGCGGTCGTCTTCCTCCTCGCCGCCGCCGCCTCGGGGGCGTGCGGTTGCGCCGCCGCGTTCCCGGCCGCCCGGTGGAGGAAGAGGGCGCAGGTGGGCGACGACGACGACGATGTCGAGAGCGCGCTCGGGGGCGCCACCACGGTCACGACGTACGAGCAGGCGGCGGCGGCGTCGTCGTCTTCGCCGGCGGCAGGGGCAGCGGCGGAGGGAGCGGACACGTGCGCGATCTGCTGTCAGGAATACTCCGGCGCCGACAAGGTGCGGCGGGTGGTGCGGTGCAGCCATTTCTTCCACGCGGGGTGCGTCGACGGTTGGCTCCGGGAGAAGCGGAATTGCCCGCTGTGCCGCGCCGTGCTGTCGTCGTTGCCGCCGCTTCCCAACCCTGGCTGCCGCCGCGGACGAGCCGCCCCGCCGTGTCCGCCGCCGCTGCCGCCACCGTTGTCGTCGGCTAATTACTTATCAGGATTTTGCAGATCTCATTTTGTTTTGGATTATTGA
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| Protein seq | MMDVMDTEEAVHLVVVGVVAVGAVVFLLAAAASGACGCAAAFPAARWRKRAQVGDDDDDVESALGGATTVTTYEQAAAASSSSPAAGAAAEGADTCAICCQEYSGADKVRRVVRCSHFFHAGCVDGWLREKRNCPLCRAVLSSLPPLPNPGCRRGRAAPPCPPPLPPPLSSANYLSGFCRSHFVLDY |
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| Function | Putative RING-H2 finger protein ATL53 [UniProtKB/Swiss-Prot:P0C041] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0648600 | Os03t0648600-00 | Chr03 | 25135397 | 25136081 | + | irgsp1_rep | ||
| CDS seq | ATGATGGACGTCATGGACACCGAGGAGGCGGTTCACCTCGTGGTCGTCGGGGTGGTGGCCGTGGGGGCGGTCGTCTTCCTCCTCGCCGCCGCCGCCTCGGGGGCGTGCGGTTGCGCCGCCGCGTTCCCGGCCGCCCGGTGGAGGAAGAGGGCGCAGGTGGGCGACGACGACGACGATGTCGAGAGCGCGCTCGGGGGCGCCACCACGGTCACGACGTACGAGCAGGCGGCGGCGGCGTCGTCGTCTTCGCCGGCGGCAGGGGCAGCGGCGGAGGGAGCGGACACGTGCGCGATCTGCTGTCAGGAATACTCCGGCGCCGACAAGGTGCGGCGGGTGGTGCGGTGCAGCCATTTCTTCCACGCGGGGTGCGTCGACGGTTGGCTCCGGGAGAAGCGGAATTGCCCGCTGTGCCGCGCCGTGCTGTCGTCGTTGCCGCCGCTTCCCAACCCTGGCTGCCGCCGCGGACGAGCCGCCCCGCCGTGTCCGCCGCCGCTGCCGCCACCGTTGTCGTCGGCTAATTACTTATCAGGATTTTGCAGATCTCATTTTGTTTTGGATTATTGA
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| Protein seq | MMDVMDTEEAVHLVVVGVVAVGAVVFLLAAAASGACGCAAAFPAARWRKRAQVGDDDDDVESALGGATTVTTYEQAAAASSSSPAAGAAAEGADTCAICCQEYSGADKVRRVVRCSHFFHAGCVDGWLREKRNCPLCRAVLSSLPPLPNPGCRRGRAAPPCPPPLPPPLSSANYLSGFCRSHFVLDY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0648600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44636 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0620100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028150 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027880 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027720 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0437000 | RBH | 0.084713 | 1.5475555 | 0.3399075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027460 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0438200 | RBH | 0.112733 | 3.7502165 | 0.070753 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0027740 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027800 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027590 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027610 | RBH | 0.0 | 0.0 | 0.0 |
