Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0020800 | OGI:12003450 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:1224796-1225602 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATCTCGTATCTCCACAACAGGAATATGGGAGATGATGTGCCAGTCCTTCCCGACCCTATTTTTGTAATGCCTACTCAAGGTAGGGTTGTAACTAATCACCAAATGCTGAAGAGAAGTAAGGTGTTGTATGGAGCTGGGCAAGGATCGAAGGCCAGTGCAGCTTTGCATATAAAGCGATCGGAGCGCGGAGAGTTGTCTGAGTGACTCTGGCAGCACGGTGAGCATAGGGCAGCTCATCAAGTTGATGTGCCGGAGTGAGGTGAGCCCCTGCATGGACTCCAGAAGGGTCGTAAGGACAGGCAAGATATTGATCATAAGGTCCTCTAGAGAACCTAACATCCCCAGTCCTTCTGGCAGCTTGTGGAGGGCAAGACAGTCCTGTATACTTAGGTCTTCAAGGTTGGTAAGATGCTGAATTCCCTCAGGCAACTGGCTCAGATTTCTGCAACTAGAAATATCCAATTCCTTGAGGGAGGTGAGATGATTTACCACCTCAGGCAACTCCTTTAGATTGTCGCATTCAACAATAGCCAACTTCTCCAGGGATGTAAGGAGCATGATCGACTTGGGGAGGCTAGCCAATAGTGGGATTTCTTTCAGAACTAGAGTTTGCAGAGAGCGGAATCCCCCCAGCCACTCTGGCAGCATGGCAAGAACTGGGCAACCCGAGATACAAAGATACTGGAGGGAGGTGAGGCTCCGGATGATCTCCCCTAATTGCCTTAGGTCACTGGAATAAATTGACAAGGATTCGAGCCCGGTGAGGTTCTGCAGCACTTCCCAACCTGACGATGATCCAGCCAT
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| CDS seq | ATGGCTGGATCATCGTCAGGTTGGGAAGTGCTGCAGAACCTCACCGGGCTCGAATCCTTGTCAATTTATTCCAGTGACCTAAGGCAATTAGGGGAGATCATCCGGAGCCTCACCTCCCTCCAGTATCTTTGTATCTCGGGTTGCCCAGTTCTTGCCATGCTGCCAGAGTGGCTGGGGGGATTCCGCTCTCTGCAAACTCTAGTTCTGAAAGAAATCCCACTATTGGCTAGCCTCCCCAAGTCGATCATGCTCCTTACATCCCTGGAGAAGTTGGCTATTGTTGAATGCGACAATCTAAAGGAGTTGCCTGAGGTGGTAAATCATCTCACCTCCCTCAAGGAATTGGATATTTCTAGTTGCAGAAATCTGAGCCAGTTGCCTGAGGGAATTCAGCATCTTACCAACCTTGAAGACCTAAGTATACAGGACTGTCTTGCCCTCCACAAGCTGCCAGAAGGACTGGGGATGTTAGGTTCTCTAGAGGACCTTATGATCAATATCTTGCCTGTCCTTACGACCCTTCTGGAGTCCATGCAGGGGCTCACCTCACTCCGGCACATCAACTTGATGAGCTGCCCTATGCTCACCGTGCTGCCAGAGTCACTCAGACAACTCTCCGCGCTCCGATCGCTTTATATGCAAAGCTGCACTGGCCTTCGATCCTTGCCCAGCTCCATACAACACCTTACTTCTCTTCAGCATTTGGTGATTAGTTACAACCCTACCTTGAGTAGGCATTACAAAAATAGGGTCGGGAAGGACTGGCACATCATCTCCCATATTCCTGTTGTGGAGATACGAGATTAG
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| Protein seq | MAGSSSGWEVLQNLTGLESLSIYSSDLRQLGEIIRSLTSLQYLCISGCPVLAMLPEWLGGFRSLQTLVLKEIPLLASLPKSIMLLTSLEKLAIVECDNLKELPEVVNHLTSLKELDISSCRNLSQLPEGIQHLTNLEDLSIQDCLALHKLPEGLGMLGSLEDLMINILPVLTTLLESMQGLTSLRHINLMSCPMLTVLPESLRQLSALRSLYMQSCTGLRSLPSSIQHLTSLQHLVISYNPTLSRHYKNRVGKDWHIISHIPVVEIRD |
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| Function | Disease resistance protein RPV1 [UniProtKB/Swiss-Prot:V9M2S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0020800 | OsMH63_12T0020800.1 | Chr12 | 1224796 | 1225602 | - | maker | ||
| CDS seq | ATGGCTGGATCATCGTCAGGTTGGGAAGTGCTGCAGAACCTCACCGGGCTCGAATCCTTGTCAATTTATTCCAGTGACCTAAGGCAATTAGGGGAGATCATCCGGAGCCTCACCTCCCTCCAGTATCTTTGTATCTCGGGTTGCCCAGTTCTTGCCATGCTGCCAGAGTGGCTGGGGGGATTCCGCTCTCTGCAAACTCTAGTTCTGAAAGAAATCCCACTATTGGCTAGCCTCCCCAAGTCGATCATGCTCCTTACATCCCTGGAGAAGTTGGCTATTGTTGAATGCGACAATCTAAAGGAGTTGCCTGAGGTGGTAAATCATCTCACCTCCCTCAAGGAATTGGATATTTCTAGTTGCAGAAATCTGAGCCAGTTGCCTGAGGGAATTCAGCATCTTACCAACCTTGAAGACCTAAGTATACAGGACTGTCTTGCCCTCCACAAGCTGCCAGAAGGACTGGGGATGTTAGGTTCTCTAGAGGACCTTATGATCAATATCTTGCCTGTCCTTACGACCCTTCTGGAGTCCATGCAGGGGCTCACCTCACTCCGGCACATCAACTTGATGAGCTGCCCTATGCTCACCGTGCTGCCAGAGTCACTCAGACAACTCTCCGCGCTCCGATCGCTTTATATGCAAAGCTGCACTGGCCTTCGATCCTTGCCCAGCTCCATACAACACCTTACTTCTCTTCAGCATTTGGTGATTAGTTACAACCCTACCTTGAGTAGGCATTACAAAAATAGGGTCGGGAAGGACTGGCACATCATCTCCCATATTCCTGTTGTGGAGATACGAGATTAG
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| Protein seq | MAGSSSGWEVLQNLTGLESLSIYSSDLRQLGEIIRSLTSLQYLCISGCPVLAMLPEWLGGFRSLQTLVLKEIPLLASLPKSIMLLTSLEKLAIVECDNLKELPEVVNHLTSLKELDISSCRNLSQLPEGIQHLTNLEDLSIQDCLALHKLPEGLGMLGSLEDLMINILPVLTTLLESMQGLTSLRHINLMSCPMLTVLPESLRQLSALRSLYMQSCTGLRSLPSSIQHLTSLQHLVISYNPTLSRHYKNRVGKDWHIISHIPVVEIRD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.9744965 | 14.1373235 | 11.1777635 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0222900 | SBH | 1.441471 | 0.715175 | 0.525551 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03080 | SBH | 0.367978 | 0.055023 | 0.350001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0222900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001550 | SBH | 0.224337 | 10.797930 | 2.704183 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001770 | SBH | 0.052649 | 1.639410 | 0.939718 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001780 | SBH | 0.362773 | 15.583053 | 4.479618 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001580 | SBH | 0.052969 | 0.384773 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001710 | SBH | 1.933495 | 15.520889 | 5.165576 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0677700 | RBH | 3.8162655 | 10.810249 | 5.856437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001700 | SBH | 0.111086 | 1.047167 | 0.715740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0022100 | RBH | 0.143046 | 1.4429195 | 4.9281885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001590 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001750 | SBH | 0.037447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001730 | RBH | 0.967246 | 18.148108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001700 | SBH | 0.227049 | 0.0 | 0.425351 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001550 | SBH | 0.000000 | 0.324972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001480 | SBH | 0.058298 | 0.000000 | 0.348087 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001640 | SBH | 0.0 | 3.407386 | 0.0 |
