Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0001580 | OGI:12003450 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:1111650-1118733 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TGTTACGATCGACAGTCTCCCTTGCAAATAAGCGCATACATATGTTGTGTGATAGGAATGTCACAGAGCAACAACTCTGGATATTAATTAATAGAGGGAGCGCACATAATGGTAGCCCCGTGATCAACTTAAAATGCATTTATCAAGTACCAAAGATGCCAATATTACAAGTACAAAAGTGTAGCATGCCAACTGCGAGACTGCATGTTGAATTGAACGATATGCCGACTGCAAATCAATTTTCCGAGTTGTATTCTTCGACCAAAAGATGTGCCTGGCACTCGTAAAACACTTGAGTTTGTCGAACGATCAAATTCATGGTCTTATAAGCATAGCAATTCTTGGTTGATTTTCTCGAGCAAATCAATCAAGTCCCTGGTAAAAGAAGCTTACTGCAGAATGTTCGGTAAACAAGGACCAAATGAACAGTGCATCTTTAAATGATAAGTTCGTATATCAACTCCCTGGCTTCTCTTCACAAGTACAAACTCCAGGCTAGTGTTAATATCAAAATAACAAAACAGATGTATTCCCAGGAAGAGCCCAGTTCTTTGTCGAGTACATTCTGTTCATCTCATGCAGATTTTCTTATGTTGATCATCAGGCTAATTCAAATGCCCTGACCCTGAAAATGATTAATGTCTAGAGTAAGTCCTCATCTATTATTTTGCATCCCAAATGCAAAATCTGATGTGCTTAAGATTCTTATCAAACCAAGAATGATTGCCAAACTTTTTCACTACTTAAAGTTACTTCCTTTGTCCCATAAAAAACCTAATCCTGAGGTTAAATCTGTATATAGTGTATGTCCAGATTTATCTCTAGGGTTGGATTCTTTTTGGTATATAGGGAGTATGATGGAACACTCTCAGTATTTTACAGCCACCATAGTCTCAGGAACATCTTTCAGAATACTCCTTACACAATACAGGAAACATGCTAGCCTGCTGACCGTAAAGCAGCAATGCCACATTGTAACCTGACCAGCCTGCAGGCATCTTCCTGAAAATTTGCATTTTGTACCGTCTCACAAAAAAAAATGGTGTGAAACTGTGAACACAATGAACATGTCTGAAAAGGAAACCTATAAAACAGTGTGTGTTTTTTTTTGTGGACCAAGGAAAAGAGTTTTTTTTTCAATGGAATATTCCCAAGGAAATCCATGAGAATAAAATAGAATGGTGTTTGCTTGCGCAAGCATGCTTAATTAATTTGTTCAGTAAATTCGAATGGCAAGAAAAAAAGATTGCAGTCCTGGAAAAGATAGTGGAAGTACCAAATGAGCATTTTTCTCAAACAGCAAATTTGTGCCCTGAGATTCTCACTTGTAAGATAACTAAAACAAAAGAGTGTGTACCTTATCCATCTTTCCTTGCATGTCAAGATTCAAAACTTGAGAGTGATCATCTCCAAAGCTGGTTCATGAACACATATGCTCTGCTCCACGACTCCACCAGCAGGGGGTTCTGGAACAATTATAGAAAAAAGATGGGTTGGGAAATTAGTAACAAGTATTGAGGATACAAAAGAGACGTGCAATAATAAGGCATAGTCGCACAGAGCCACAGAAGTAGTATGTCACCACCTTGCCATGCTCGTTTATTTGTTGTTAGTGCCCAGCATGCTCCCTAATCTCGTATCTCCACAACAGGAATATGGGAGATGATGTGCCAGTCCTTCCCGACCCTATTTTTGTAATGCCTACTCAAGGTAGGGTTGTAACTAATCACCAAATGCTGAAGAGAAGTAAGGTGTTGTATGGAGCTGGGCAAGGATCGAAGGCCAGTGCAGCTTTGCATATAAAGCGATCGGAGCGCGGAGAGTTGTCTGAGTGACTCTGGCAGCACGGTGAGCATAGGGCAGCTCATCAAGTTGATGTGCCGGAGTGAGGTGAGCCCCTGCATGGACTCCAGAAGGGTCGTAAGGACAGGCAAGATATTGATCATAAGGTCCTCTAGAGAACCTAACATCCCCAGTCCTTCTGGCAGCTTGTGGAGGGCAAGACAGTCCTGTATACTTAGGTCTTCAAGGTTGGTAAGATGCTGAATTCCCTCAGGCAACTGGCTCAGATTTCTGCAACTAGAAATATCCAATTCCTTGAGGGAGGTGAGATGATTTACCACCTCAGGCAACTCCTTTAGATTGTCGCATTCAACAATAGCCAACTTCTCCAGGGATGTAAGGAGCATGATCGACTTGGGGAGGCTAGCCAATAGTGGGATTTCTTTCAGAACTAGAGTTTGCAGAGAGCGGAATCCCCCCAGCCACTCTGGCAGCATGGCAAGAACTGGGCAACCCGAGATACAAAGATACTGGAGGGAGGTGAGGCTCCGGATGATCTCCCCTAATTGCCTTAGGTCACTGGAATAAATTGACAAGGATTCGAGCCCGGTGAGGTTCTGCAGCACTTCCCAACCTGACGATGATCCAGCCATTCCTCCTAGTTCTAATTTCTTGAGGTGAGGGGAATCCACACTAAAGCAGATGGATGAGGATTCCTTGTCAAGAGGATGGAGCGGATGAGAGAAGCTAACTTGAGACAGCAGCTGCTCGTTGCTTCGTTCCAGTGTCAAGCTATCCAAATATGGTGGGAAACATGGGCATTACTTCAGCTTAGGACAATCACTCATGACTAGAGTGGATAGGAAAGGGAAGCAGTGCTCAACTTGTTCGTGATCAATACAACAGGGCTTTCCTTCCTCCCCACTTACTAATGCAGGTGAGCTTGTCCACAACTCCACCAAATTAGGCATTCCTTTCAATACAAAAGTATTCAATGAAGGCAACCGTGCAAGTCCTTGCAGATTCTCCAAGTTTGGAAATTGTTCCAATACAAGTTTAGTCAGTTGAGTGAAATGAGGTGGATCAATTTGCTCTAACAAGCTATCTGAACAAGAGGATTCTCTTTGCTTCATCATCCAACGTGAGAAATGCTTACCTTTGTAATTATAGATATTCAGCTTCTTAATTTGTGATGGTGGTTCAAGACCATTGAGCACACGCAGCTCCTTTTCCATATCTAATAATGGCTCTTCTTCCAGACTATCCGAGCACCCTTCTGCACCATTTGAAGACCAATCCAATGTCAAATTGAGTATACCACTCTTTTCCTTCAGGGAGGCCTTTTCTGCATCATCTGGATCCTCTACATATTTAATAATTTTTATTTCCAGATCATTGTCGGTTAACAAGTTGAGGTTTCGAAGCCCTGATATTCTTGCATGCTCGCTACTGCCACCTATAACAAACAAATGCAGCCTTTGAAGATGAGTTAGCTGTCCAATCCCTACTGGCAGGCCACCCAAATTCGAGCATCCTTTTAGGTTCAAAACTTCAAGCCTCTCTAGGTTCCCTATGCCCTCCGATAACTCTAGCAGCCCCCAGCAGTTTTGAAGGTCTATGTATTCCAGGGTGCTCACCAATGTGAGGCATTGCGGTAGTCTGGTAATTTCGGTTCCACTAAGTGTCAAAGTGCGTAGTTTATGACAAGCAAATGAACTGAACAAGTTGTGGATACCCTCAATCTGTGCTAAGTTGATGGACTGTAAGTTGCAAAGCGTCCCAAAGAATTCTGACCATTGTTGCCTCAAAGAGCGACAATGCATAATGTTAAGCACTCTTAGTTTTTTAATTTTACATATGGAGTTTGGTATCTCCCTGATACCACTGCCACGCAGGAGAAAGCTTTGAAGATTATGACAGTCACCAATGGACTGAGGCAAACTTTCAAGATCCAAAAGACATGACAACTCTAGGGTTCTCAGCTTCTTAAGCTTACCAATAGACTCAGGTAATGTGGTAAGTGCCCTGCAATATGTAACATGAAGGGCCTGCAAGTTCCAGCAATGTGAGATTTCTTCTGGAAAGGCTCGACAGCTAGCGTGTGAGATACGAAAATAGCTAAGATATTCGAACTTTGGTATCAATGGAAGCAACAAATTAGTAGCGCCCATACTCTCCAAAATAATAGAACGAACATGGCACCTTTTCTTGATTGGCTTGTTGAGTGCGAAGTTGTCACCAGAAATATAGATAGCATGGACCTTGCTAAATAACTTCACTTCAATATTCTCATTGCACGAAGCCAAAGATAAATATCTGCATTTTTGGGAATTACCAATAGTTGCATTCTGAGAATGAGACACCATTTCACCCTGTAAAATTTGCCGAGTAAGGTCAAGAACCAGGTCATGCATCTTGCATATTTCCATTTCATCATACTCATCTACCTCTAGATCTTGGAGAAAGTGCACTTTCAGAAGAGAATCAAAGCAGTCATTTGCAACATCCTCTACTTGTTCAATCTCATTCATTGGATTGATGAAGCCATTTGCTATCCACTCTCCGATCAACTGGTGTTTGTAGATCTTGTAGCCTTTAGGAAATATAGAGCAATATACAAAACATTGCTTCAGATGATCAGGCAGATGAAAATAGCTCAGCCTTAATGACGCAAACACTCTATCTTCTATATCATCAACATTCCACATGTTACTATCACGTAAGGCACACCATGCATCTACTGTTTTCTTGTTACGGAGGACACCTGCAAGAATTTTAATTGCCAGTGGCACCCCACCACATTTTTTAATAATCTCTCTTCCAATTTCTACAAATTCAGAGGGCAGACCTTTTGCAGCTAACCTTAAACTTTGTTGAAATAAATTCCAGCTGTCCTCATCTGACAAGAAAGCCAACTTATATGTACATGTAGATTCCACTGCCTCCGCAACTCCCTGATCACGAGTTGTGAGCAAAATCCGGCTTCCAGGTGATCCACTCTTAAGATATAGCATGAATCGTTCCCAGTCATATTGATTCTTGTGCCAAGCATCATCCAAGACAAGTAGAAACTTATTCCCATTCAACTCGTTTGAAATTGCTTCAACCATCTGTTGGTCGGTACGAAGATATGATGTTTTCTTTAAAATGGCTTCATACAGCTTGCCGACGAGTTTGTTATTATCAAATTCTTGTGACACGTGAACCCAAAATATTGAGCCTTCAAAATGCTCTTTTATTTTGTTGTCATGACAGATGTGTGTGGCCATAGTAGTTTTACCGGTTCCACCAAGTCCAACAATTGAAACTATTGAGATTTTCTGTTGGTCATCTATTAACTTACATATGATCTTGTGCTTCTCCTCATCTCACATGTATTTTTGAGTCATCAACATTGCCCAATAAGGATGGCTCACTGATAATCTTGTTTTTATGAACATTATGATCGATTGGTATAGCATTCAATATAGTATTGACATCGCCTCTTTGCTCGACAATTGCAGCAAATCTGTTTTTGATTGTCTTTATCTTGTTGGCCATTTTGAGTTGAAACATGGCTAGTTTTGGTTTTGTGCGCATGTATTTGAGCACAGCATACTTGTCACGATCATTATCTGTGTCATGTTTCTCAGACTGAAGATGAAATTCATGTACCAAATCTTCAAGATCGTAAGCAAAATCTTTCAATTTTTTTAGCCAATTAGATGGTGGTTTATTACCAATTGCATTATCACCTGCTACCTGTAGCCCGCTTTTGATCTCCTCAACTAAATCTTGAAGCTCCTGGAGATCTTTCGTAACACCCATAAGAGAACTATACTCTCTTATTACAAGTGGTGCTAACTTGTCTCCCACAATCTTAAATAATCCATACAGCAGCTTCCATGCCCATATGTTTGAAACTTGGAAGCTTCTCTTTGGCCCAAATCCTACATATTAAATTTCAGAATGAGATGCTACATACTGAATTTCAAATGATTCAGGTGCAATATTCGTAATTATTTTTTATGCAATGAAAACTAACGCTAGTATATGTTTGTATGCCTGATTGTTATTTTCTTTCTAAGTTCAACCATGTTTTACACGTGCAGAGCAAGATAGACATATAAAAGCGTAACAGATGACGCCCGGTTAATGGTACCTGATATGGAAAAATAGGTGTTAAGCCTTTGCCTTCTCTTCGTTGAAGTTGTGCTTCTTCGATCTCTTTGAAGATGCACTTGTTTTGTTCAATTGTTCATAACATCATGATGAACCAAGAGGTACATGTATGTGATATATTGAGGACAGGTTCTGATGTATATACAAGAAAGCAAACTAGTAAATAACGGAAGATAGATGCCCATGAAAGCTTCTAGCACACAAGAACCATCAGTAAGTTGTGTTTCTATTGAATTGTAAATATCCGTACTTAGTAGTACTGTAGTAGAGTACTAGCTCCCTGAGAAGAGGCAGAACAATCCCCTGAGAAAAGCTGAACAAAAGACAAACCATTTGCAAAAGAGATTAGTGGTGGAGTAGATTTTGGAGAACACATTATCTTAACATAAAAACGCGAGAAATTTAGTTTTGAAGGATACAAAAGCTGAGGTAATTAAACACCTGATCTCAGGTCGTCTGACTTGATCCTGCAGTATCCCCTCACTGTCCCAAGCAACACAAATAACACCTGTTTCTTGGGATTTAGTTGCAGAGTGGTGGTGGTTCTGGCAGCTCCATTCATTAGAGCTCCCTTGTCACCTTAAAATGTGATTAGTATCCACCAATTTGGGTTGGTGTAGTGCTGGGTGAGTTGGAAACACATGCCCACAACATATAATATAAATCGAATATCCACCAATTGCAGTTTAAATACAGAAAGCTGGTGTGGAAATGTCACTTTCGAAACCACTCTATGGCAAGCCAGTCAAAGAAGGACGATCCTCACAAAAATCATAGTAATAATCTAGTTTTGCTTAGCTGTTGGTAGTCAGATGGGGGCTGTATGAGGACAGCGATTTCTAGTTTGGGGCTGTAGTTGCAAGTTGCAGATCGAAGTATCGAACAAGTTGAGCTCCCCCTAATAGATCTAGTCTGGGCGGGCCAGGGAGAGAGAGAGAGAAAGGTAGGCGTGGGGGATCAGGGATGCGATACCTAACCTCGTCGTGGAGATGGAAGACGACGACCGCGCGGCTGCATCGTTGGGCCATGCGTCCGCGGCAGTATGCGGATGGGATAGGAGCCGGAGGCGAAGGGAGGGGAGCAAGCCGTGAGTCCTGGCGGCGGCAACCGGCAGCAACGGTCGCGCAAGCGGTGGCCGAAC
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| CDS seq | ATGGCCACACACATCTGTCATGACAACAAAATAAAAGAGCATTTTGAAGGCTCAATATTTTGGGTTCACGTGTCACAAGAATTTGATAATAACAAACTCGTCGGCAAGCTGTATGAAGCCATTTTAAAGAAAACATCATATCTTCGTACCGACCAACAGATGGTTGAAGCAATTTCAAACGAGTTGAATGGGAATAAGTTTCTACTTGTCTTGGATGATGCTTGGCACAAGAATCAATATGACTGGGAACGATTCATGCTATATCTTAAGAGTGGATCACCTGGAAGCCGGATTTTGCTCACAACTCGTGATCAGGGAGTTGCGGAGGCAGTGGAATCTACATGTACATATAAGTTGGCTTTCTTGTCAGATGAGGACAGCTGGAATTTATTTCAACAAAGTTTAAGGTTAGCTGCAAAAGGTCTGCCCTCTGAATTTGTAGAAATTGGAAGAGAGATTATTAAAAAATGTGGTGGGGTGCCACTGGCAATTAAAATTCTTGCAGGTGTCCTCCGTAACAAGAAAACAGTAGATGCATGGTGTGCCTTACGTGATAGTAACATGTGGAATGTTGATGATATAGAAGATAGAGTGTTTGCGTCATTAAGGCTGAGCTATTTTCATCTGCCTGATCATCTGAAGCAATGTTTTGTATATTGCTCTATATTTCCTAAAGGCTACAAGATCTACAAACACCAGTTGATCGGAGAGTGGATAGCAAATGGCTTCATCAATCCAATGAATGAGATTGAACAAGTAGAGGATGTTGCAAATGACTGCTTTGATTCTCTTCTGAAAGTGCACTTTCTCCAAGATCTAGAGGTAGATGAGTATGATGAAATGGAAATATGCAAGATGCATGACCTGGTTCTTGACCTTACTCGGCAAATTTTACAGGGTGAAATGGTGTCTCATTCTCAGAATGCAACTATTGGTAATTCCCAAAAATGCAGATATTTATCTTTGGCTTCGTGCAATGAGAATATTGAAGTGAAGTTATTTAGCAAGGTCCATGCTATCTATATTTCTGGTGACAACTTCGCACTCAACAAGCCAATCAAGAAAAGGTGCCATGTTCGTTCTATTATTTTGGAGAGTATGGGCGCTACTAATTTGTTGCTTCCATTGATACCAAAGTTCGAATATCTTAGCTATTTTCGTATCTCACACGCTAGCTGTCGAGCCTTTCCAGAAGAAATCTCACATTGCTGGAACTTGCAGGCCCTTCATGTTACATATTGCAGGGCACTTACCACATTACCTGAGTCTATTGGTAAGCTTAAGAAGCTGAGAACCCTAGAGTTGTCATGTCTTTTGGATCTTGAAAGTTTGCCTCAGTCCATTGGTGACTGTCATAATCTTCAAAGCTTTCTCCTGCGTGGCAGTGGTATCAGGGAGATACCAAACTCCATATGTAAAATTAAAAAACTAAGAGTGCTTAACATTATGCATTGTCGCTCTTTGAGGCAACAATGGTCAGAATTCTTTGGGACGCTTTGCAACTTACAGTCCATCAACTTAGCACAGATTGAGGGTATCCACAACTTGTTCAGTTCATTTGCTTGTCATAAACTACGCACTTTGACACTTAGTGGAACCGAAATTACCAGACTACCGCAATGCCTCACATTGGTGAGCACCCTGGAATACATAGACCTTCAAAACTGCTGGGGGCTGCTAGAGTTATCGGAGGGCATAGGGAACCTAGAGAGGCTTGAAGTTTTGAACCTAAAAGGATGCTCGAATTTGGGTGGCCTGCCAGTAGGGATTGGACAGCTAACTCATCTTCAAAGGCTGCATTTGTTTGTTATAGGTGGCAGTAGCGAGCATGCAAGAATATCAGGGCTTCGAAACCTCAACTTGTTAACCGACAATGATCTGGAAATAAAAATTATTAAATATGTAGAGGATCCAGATGATGCAGAAAAGGCCTCCCTGAAGGAAAAGAGTGGTATACTCAATTTGACATTGGATTGGTCTTCAAATGGTGCAGAAGGGTGCTCGGATAGTCTGGAAGAAGAGCCATTATTAGATATGGAAAAGGAGCTGCGTGTGCTCAATGGTCTTGAACCACCATCACAAATTAAGAAGCTGAATATCTATAATTACAAAGGTAAGCATTTCTCACGTTGGATGATGAAGCAAAGAGAATCCTCTTGTTCAGATAGCTTGTTAGAGCAAATTGATCCACCTCATTTCACTCAACTGACTAAACTTGTATTGGAACAATTTCCAAACTTGGAGAATCTGCAAGGACTTGCACGGTTGCCTTCATTGAATACTTTTGTATTGAAAGGAATGCCTAATTTGGTGGAGTTGTGGACAAGCTCACCTGCATTAGTAAGTGGGGAGGAAGGAAAGCCCTGTTGTATTGATCACGAACAAGTTGAGCACTGCTTCCCTTTCCTATCCACTCTAGTCATGAGTGATTGTCCTAAGCTGAAGTAA
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| Protein seq | MATHICHDNKIKEHFEGSIFWVHVSQEFDNNKLVGKLYEAILKKTSYLRTDQQMVEAISNELNGNKFLLVLDDAWHKNQYDWERFMLYLKSGSPGSRILLTTRDQGVAEAVESTCTYKLAFLSDEDSWNLFQQSLRLAAKGLPSEFVEIGREIIKKCGGVPLAIKILAGVLRNKKTVDAWCALRDSNMWNVDDIEDRVFASLRLSYFHLPDHLKQCFVYCSIFPKGYKIYKHQLIGEWIANGFINPMNEIEQVEDVANDCFDSLLKVHFLQDLEVDEYDEMEICKMHDLVLDLTRQILQGEMVSHSQNATIGNSQKCRYLSLASCNENIEVKLFSKVHAIYISGDNFALNKPIKKRCHVRSIILESMGATNLLLPLIPKFEYLSYFRISHASCRAFPEEISHCWNLQALHVTYCRALTTLPESIGKLKKLRTLELSCLLDLESLPQSIGDCHNLQSFLLRGSGIREIPNSICKIKKLRVLNIMHCRSLRQQWSEFFGTLCNLQSINLAQIEGIHNLFSSFACHKLRTLTLSGTEITRLPQCLTLVSTLEYIDLQNCWGLLELSEGIGNLERLEVLNLKGCSNLGGLPVGIGQLTHLQRLHLFVIGGSSEHARISGLRNLNLLTDNDLEIKIIKYVEDPDDAEKASLKEKSGILNLTLDWSSNGAEGCSDSLEEEPLLDMEKELRVLNGLEPPSQIKKLNIYNYKGKHFSRWMMKQRESSCSDSLLEQIDPPHFTQLTKLVLEQFPNLENLQGLARLPSLNTFVLKGMPNLVELWTSSPALVSGEEGKPCCIDHEQVEHCFPFLSTLVMSDCPKLK |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0001580 | OsARC_12g0001580.02 | Chr12 | 1111650 | 1116700 | - | NAM | ||
| CDS seq | ATGGCCACACACATCTGTCATGACAACAAAATAAAAGAGCATTTTGAAGGCTCAATATTTTGGGTTCACGTGTCACAAGAATTTGATAATAACAAACTCGTCGGCAAGCTGTATGAAGCCATTTTAAAGAAAACATCATATCTTCGTACCGACCAACAGATGGTTGAAGCAATTTCAAACGAGTTGAATGGGAATAAGTTTCTACTTGTCTTGGATGATGCTTGGCACAAGAATCAATATGACTGGGAACGATTCATGCTATATCTTAAGAGTGGATCACCTGGAAGCCGGATTTTGCTCACAACTCGTGATCAGGGAGTTGCGGAGGCAGTGGAATCTACATGTACATATAAGTTGGCTTTCTTGTCAGATGAGGACAGCTGGAATTTATTTCAACAAAGTTTAAGGTTAGCTGCAAAAGGTCTGCCCTCTGAATTTGTAGAAATTGGAAGAGAGATTATTAAAAAATGTGGTGGGGTGCCACTGGCAATTAAAATTCTTGCAGGTGTCCTCCGTAACAAGAAAACAGTAGATGCATGGTGTGCCTTACGTGATAGTAACATGTGGAATGTTGATGATATAGAAGATAGAGTGTTTGCGTCATTAAGGCTGAGCTATTTTCATCTGCCTGATCATCTGAAGCAATGTTTTGTATATTGCTCTATATTTCCTAAAGGCTACAAGATCTACAAACACCAGTTGATCGGAGAGTGGATAGCAAATGGCTTCATCAATCCAATGAATGAGATTGAACAAGTAGAGGATGTTGCAAATGACTGCTTTGATTCTCTTCTGAAAGTGCACTTTCTCCAAGATCTAGAGGTAGATGAGTATGATGAAATGGAAATATGCAAGATGCATGACCTGGTTCTTGACCTTACTCGGCAAATTTTACAGGGTGAAATGGTGTCTCATTCTCAGAATGCAACTATTGGTAATTCCCAAAAATGCAGATATTTATCTTTGGCTTCGTGCAATGAGAATATTGAAGTGAAGTTATTTAGCAAGGTCCATGCTATCTATATTTCTGGTGACAACTTCGCACTCAACAAGCCAATCAAGAAAAGGTGCCATGTTCGTTCTATTATTTTGGAGAGTATGGGCGCTACTAATTTGTTGCTTCCATTGATACCAAAGTTCGAATATCTTAGCTATTTTCGTATCTCACACGCTAGCTGTCGAGCCTTTCCAGAAGAAATCTCACATTGCTGGAACTTGCAGGCCCTTCATGTTACATATTGCAGGGCACTTACCACATTACCTGAGTCTATTGGTAAGCTTAAGAAGCTGAGAACCCTAGAGTTGTCATGTCTTTTGGATCTTGAAAGTTTGCCTCAGTCCATTGGTGACTGTCATAATCTTCAAAGCTTTCTCCTGCGTGGCAGTGGTATCAGGGAGATACCAAACTCCATATGTAAAATTAAAAAACTAAGAGTGCTTAACATTATGCATTGTCGCTCTTTGAGGCAACAATGGTCAGAATTCTTTGGGACGCTTTGCAACTTACAGTCCATCAACTTAGCACAGATTGAGGGTATCCACAACTTGTTCAGTTCATTTGCTTGTCATAAACTACGCACTTTGACACTTAGTGGAACCGAAATTACCAGACTACCGCAATGCCTCACATTGGTGAGCACCCTGGAATACATAGACCTTCAAAACTGCTGGGGGCTGCTAGAGTTATCGGAGGGCATAGGGAACCTAGAGAGGCTTGAAGTTTTGAACCTAAAAGGATGCTCGAATTTGGGTGGCCTGCCAGTAGGGATTGGACAGCTAACTCATCTTCAAAGGCTGCATTTGTTTGTTATAGGTGGCAGTAGCGAGCATGCAAGAATATCAGGGCTTCGAAACCTCAACTTGTTAACCGACAATGATCTGGAAATAAAAATTATTAAATATGTAGAGGATCCAGATGATGCAGAAAAGGCCTCCCTGAAGGAAAAGAGTGGTATACTCAATTTGACATTGGATTGGTCTTCAAATGGTGCAGAAGGGTGCTCGGATAGTCTGGAAGAAGAGCCATTATTAGATATGGAAAAGGAGCTGCGTGTGCTCAATGGTCTTGAACCACCATCACAAATTAAGAAGCTGAATATCTATAATTACAAAGGTAAGCATTTCTCACGTTGGATGATGAAGCAAAGAGAATCCTCTTGTTCAGATAGCTTGTTAGAGCAAATTGATCCACCTCATTTCACTCAACTGACTAAACTTGTATTGGAACAATTTCCAAACTTGGAGAATCTGCAAGGACTTGCACGGTTGCCTTCATTGAATACTTTTGTATTGAAAGGAATGCCTAATTTGGTGGAGTTGTGGACAAGCTCACCTGCATTAGTAAGTGGGGAGGAAGGAAAGCCCTGTTGTATTGATCACGAACAAGTTGAGCACTGCTTCCCTTTCCTATCCACTCTAGTCATGAGTGATTGTCCTAAGCTGAAGTAA
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| Protein seq | MATHICHDNKIKEHFEGSIFWVHVSQEFDNNKLVGKLYEAILKKTSYLRTDQQMVEAISNELNGNKFLLVLDDAWHKNQYDWERFMLYLKSGSPGSRILLTTRDQGVAEAVESTCTYKLAFLSDEDSWNLFQQSLRLAAKGLPSEFVEIGREIIKKCGGVPLAIKILAGVLRNKKTVDAWCALRDSNMWNVDDIEDRVFASLRLSYFHLPDHLKQCFVYCSIFPKGYKIYKHQLIGEWIANGFINPMNEIEQVEDVANDCFDSLLKVHFLQDLEVDEYDEMEICKMHDLVLDLTRQILQGEMVSHSQNATIGNSQKCRYLSLASCNENIEVKLFSKVHAIYISGDNFALNKPIKKRCHVRSIILESMGATNLLLPLIPKFEYLSYFRISHASCRAFPEEISHCWNLQALHVTYCRALTTLPESIGKLKKLRTLELSCLLDLESLPQSIGDCHNLQSFLLRGSGIREIPNSICKIKKLRVLNIMHCRSLRQQWSEFFGTLCNLQSINLAQIEGIHNLFSSFACHKLRTLTLSGTEITRLPQCLTLVSTLEYIDLQNCWGLLELSEGIGNLERLEVLNLKGCSNLGGLPVGIGQLTHLQRLHLFVIGGSSEHARISGLRNLNLLTDNDLEIKIIKYVEDPDDAEKASLKEKSGILNLTLDWSSNGAEGCSDSLEEEPLLDMEKELRVLNGLEPPSQIKKLNIYNYKGKHFSRWMMKQRESSCSDSLLEQIDPPHFTQLTKLVLEQFPNLENLQGLARLPSLNTFVLKGMPNLVELWTSSPALVSGEEGKPCCIDHEQVEHCFPFLSTLVMSDCPKLK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0001580 | OsARC_12g0001580.01 | Chr12 | 1112842 | 1118733 | - | NAM | ||
| CDS seq | ATGAATGGAGCTGCCAGAACCACCACCACTCTGCAACTAAATCCCAAGAAACAGGTGTTATTTGTGTTGCTTGGGACAGTGAGGGGATACTGCAGGATCAAGTCAGACGACCTGAGATCAGGATTTGGGCCAAAGAGAAGCTTCCAAGTTTCAAACATATGGGCATGGAAGCTGCTGTATGGATTATTTAAGATTGTGGGAGACAAGTTAGCACCACTTGTAATAAGAGAGTATAGTTCTCTTATGGGTGTTACGAAAGATCTCCAGGAGCTTCAAGATTTAGTTGAGGAGATCAAAAGCGGGCTACAGGTAGCAGGTGATAATGCAATTGGTAATAAACCACCATCTAATTGGCTAAAAAAATTGAAAGATTTTGCTTACGATCTTGAAGATTTGGTACATGAATTTCATCTTCAGTCTGAGAAACATGACACAGATAATGATCGTGACAAGTATGCTGTGCTCAAATACATGCGCACAAAACCAAAACTAGCCATGTTTCAACTCAAAATGGCCAACAAGATAAAGACAATCAAAAACAGATTTGCTGCAATTGTCGAGCAAAGAGGCGATGTCAATACTATATTGAATGCTATACCAATCGATCATAATGTTCATAAAAACAAGATTATCAGTGAGCCATCCTTATTGGGCAATGTTGATGACTCAAAAATACATGTGAGATGA
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| Protein seq | MNGAARTTTTLQLNPKKQVLFVLLGTVRGYCRIKSDDLRSGFGPKRSFQVSNIWAWKLLYGLFKIVGDKLAPLVIREYSSLMGVTKDLQELQDLVEEIKSGLQVAGDNAIGNKPPSNWLKKLKDFAYDLEDLVHEFHLQSEKHDTDNDRDKYAVLKYMRTKPKLAMFQLKMANKIKTIKNRFAAIVEQRGDVNTILNAIPIDHNVHKNKIISEPSLLGNVDDSKIHVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.052969 | 0.384773 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0209901 | SBH | 10.624657 | 7.397429 | 10.810076 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03080 | RBH | 0.367978 | 0.055023 | 0.350001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0209901 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001550 | RBH | 0.224337 | 10.797930 | 2.704183 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001770 | RBH | 0.052649 | 1.639410 | 0.939718 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001780 | RBH | 0.362773 | 15.583053 | 4.479618 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002000 | SBH | 0.0 | 0.017462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001710 | RBH | 1.933495 | 15.520889 | 5.165576 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0020900 | RBH | 1.2321585 | 14.6280725 | 14.3377745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001700 | RBH | 0.111086 | 1.047167 | 0.715740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0022100 | RBH | 0.143046 | 1.4429195 | 4.9281885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001590 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001750 | RBH | 0.037447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001730 | RBH | 0.967246 | 18.148108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001700 | RBH | 0.227049 | 0.0 | 0.425351 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001550 | RBH | 0.000000 | 0.324972 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001480 | RBH | 0.058298 | 0.000000 | 0.348087 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001640 | RBH | 0.0 | 3.407386 | 0.0 |
