Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0017600 | OGI:12003020 | 5/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:1080441-1082731 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGATTTGGGTTGACCGACCAAAGATGGTTTCTCTACCAGTGTACGTAAGTACAAGATACTAGTTAATCAGCCAATTAATCAATACAGAATTACTACATACAGTGACATATTACAGAATACTACAATATACAACATGTTCGACATTCTTTTTTCAGTACAACTGCATGGCCAAAATTAAAGCGAACTCTAGTACAGCACAATCCATCTGCTATCTGAATTTGGGATCAGTTTCATCAGAAATAGTGTCATGTTGATCGTGACAGAGGAGCACTCTGCACGCCACCATGGTCTCACCCACCTTCATCCCCGGCGTCACGGTGAATGCAACTCCATCTCCTTCGCCACGACCAGCATCGGCGGCGGCGGCGGCGGCCACGACGCTGTCCATGTACTCCGCCGCGTACCTGCTCCCTCTCCTCGCGTACAACATCCTGACACTTCCACGGCCACAACATCGCCGGCGCGCCGTCACCGCCACCCGCAGCGCCCACGCCGACCTCGCCATCGTCGCGAACGCCCTGTAGAACCACGTCCTCGGGTGCCCGCCTCGCGACACGAACGCCCTCACGTCCAGATTATTTCTGAACATAGCTGCCTCCATCTCTGACGACACGGCCGCTAAGTACTTTGTTCGACAGAACCTCGCGAAGCTGGAGTTGGGGTGCTCCATCAACGCGTCCAGAGGGTCACAGCATCTCATGATTCGATCGAAGCGAGCAAGATCGAGTTCGTCGTCGTCTTCAGCACCATCATGTACTGCAAGCATTGTCCGTGACAGGTAAGCTTCCAGTGAGTACCTCTTGTATGGTGAATGTTCGTCTGCATTGTTGGGACAGCGATGATCAGGTGAGGAAATCAAGCTAAAGATCAGCTCTGCGAAATCATGCACCGATGTCGATGCAACCTTGAACAGCTCCAAGACTGCACTAGGCGTCGTCAATTTTTTCAGGACAATGGAGTAATCCTTATGATGGTTAACTGATGGTTTGCTGCTACTGATCTGTTTATTCAGTCTCGAATTTGCACTCTTCAGACCATACAGCTCTCTTCTCAACAGCATAATGTCTGAATCTTTCTTCCTCGTCTCGGCCTCCAGTTCCTGCACCAGCGACCATCGATCATTGATAAGTGACCCAACGCTGCCATTCCAACTGCATAAGCTCTGTAGAGCAGTGACCGAGTCGAGCTCGTAGGTGATGATCTCGTCGGCGAAGGCAATCTTTGGACGATTATAAGGGATATGAGCTTTCTGCAGCTTGATGTAGGTTGACTTGAGAGCTCCGATTTCCTCAAACAGTCTTGTGATAACTAGCCTCTGATCATATCCGCCACAATAATCTCCAAATTCTGTCTTCGTGTCAGCAAATTCAGGCGCGGCACAAATCTTTGTGATTTTGCAGAGTTTGGAGAAGCCTAATACGAGTCCAGGAACATTACAGGTGCTCCTTGCAACTGAACTTCTTGGTGTTCTTGACTCCATTGGGGCTGATTCAGTGCAAACCAAGAAACAAAAGAAGAATCTTTGAGACGACATGGGAGAGGATGGTAAAATTATCTACGAGAAAATCAATGTAATCGATGGTTTGAACTTGCTTTACTTCTCTAATTTGATAGAAAGACTAACAAACCTCTGTTTATGACCACAGACCAAATGCAGCAATATCTTTCATTTTCTGAGATGTAAACCCAAGAGGAAACCACAGACTACATGGGCATGATGCAAATCTTGTGCTCCATCTCCACTGTTTTGAGCACTTGCACAACAAAATTCAGACACTACAATGTACTAGTAGATTTGAGCAATAAGTTGGAGCCTTGCATTTGCATGGTTGTAATGGATAAAATTGGATAAAGCAGTACACAACAGATAGAGCTATGCAGGAGCAAGAAGAATGTTGCAGACAAACAGGTTTATTTGTTGAACATGAAGGGTAGAAGAGCAAGCATGCATGAAGTACCTGAGAGGGAGGCTGGGACTGACCAGTGAAATGCTGAATTGAATTGGTGCAGAGTGACCAAGAGGATAGCCTGGTTTCCCCCGGCTAAAATTGAAACATTTCCAAGTCTGCTGCTGCTGCTTGCATGCTATGCAGAGAGGAAAGCGAAAGAGCAAGCAGGAGCAGTAGTACAATGAAGGACAGGAAATGGACATGGCAGTGGCATTGGGAACAACAAAAGCAAAAAGGTTGCAGAGACAAGGTTTTTGCGATGCATTGTGGGCACTGGAATGGATAGTGTGTGCTGTCCCCTCCCCTGGTGGCCCGTTGTCTCAAAGCAAAAGTGAAACAAAG
More
|
||||||||||
| CDS seq | ATGGAGTCAAGAACACCAAGAAGTTCAGTTGCAAGGAGCACCTGTAATGTTCCTGGACTCGTATTAGGCTTCTCCAAACTCTGCAAAATCACAAAGATTTGTGCCGCGCCTGAATTTGCTGACACGAAGACAGAATTTGGAGATTATTGTGGCGGATATGATCAGAGGCTAGTTATCACAAGACTGTTTGAGGAAATCGGAGCTCTCAAGTCAACCTACATCAAGCTGCAGAAAGCTCATATCCCTTATAATCGTCCAAAGATTGCCTTCGCCGACGAGATCATCACCTACGAGCTCGACTCGGTCACTGCTCTACAGAGCTTATGCAGTTGGAATGGCAGCGTTGGGTCACTTATCAATGATCGATGGTCGCTGGTGCAGGAACTGGAGGCCGAGACGAGGAAGAAAGATTCAGACATTATGCTGTTGAGAAGAGAGCTGTATGGTCTGAAGAGTGCAAATTCGAGACTGAATAAACAGATCAGTAGCAGCAAACCATCAGTTAACCATCATAAGGATTACTCCATTGTCCTGAAAAAATTGACGACGCCTAGTGCAGTCTTGGAGCTGTTCAAGGTTGCATCGACATCGGTGCATGATTTCGCAGAGCTGATCTTTAGCTTGATTTCCTCACCTGATCATCGCTGTCCCAACAATGCAGACGAACATTCACCATACAAGAGGTACTCACTGGAAGCTTACCTGTCACGGACAATGCTTGCAGTACATGATGGTGCTGAAGACGACGACGAACTCGATCTTGCTCGCTTCGATCGAATCATGAGATGCTGTGACCCTCTGGACGCGTTGATGGAGCACCCCAACTCCAGCTTCGCGAGGTTCTGTCGAACAAAGTACTTAGCGGCCGTGTCGTCAGAGATGGAGGCAGCTATGTTCAGAAATAATCTGGACGTGAGGGCGTTCGTGTCGCGAGGCGGGCACCCGAGGACGTGGTTCTACAGGGCGTTCGCGACGATGGCGAGGTCGGCGTGGGCGCTGCGGGTGGCGGTGACGGCGCGCCGGCGATGTTGTGGCCGTGGAAGTGTCAGGATGTTGTACGCGAGGAGAGGGAGCAGGTACGCGGCGGAGTACATGGACAGCGTCGTGGCCGCCGCCGCCGCCGCCGATGCTGGTCGTGGCGAAGGAGATGGAGTTGCATTCACCGTGACGCCGGGGATGAAGGTGGGTGAGACCATGGTGGCGTGCAGAGTGCTCCTCTGTCACGATCAACATGACACTATTTCTGATGAAACTGATCCCAAATTCAGATAG
More
|
||||||||||
| Protein seq | MESRTPRSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR |
||||||||||
| Function | Protein GRAVITROPIC IN THE LIGHT 1 [UniProtKB/Swiss-Prot:F4KGE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0017600 | OsMH63_12T0017600.1 | Chr12 | 1080441 | 1082657 | - | maker | ||
| CDS seq | ATGGAGTCAAGAACACCAAGAAGTTCAGTTGCAAGGAGCACCTGTAATGTTCCTGGACTCGTATTAGGCTTCTCCAAACTCTGCAAAATCACAAAGATTTGTGCCGCGCCTGAATTTGCTGACACGAAGACAGAATTTGGAGATTATTGTGGCGGATATGATCAGAGGCTAGTTATCACAAGACTGTTTGAGGAAATCGGAGCTCTCAAGTCAACCTACATCAAGCTGCAGAAAGCTCATATCCCTTATAATCGTCCAAAGATTGCCTTCGCCGACGAGATCATCACCTACGAGCTCGACTCGGTCACTGCTCTACAGAGCTTATGCAGTTGGAATGGCAGCGTTGGGTCACTTATCAATGATCGATGGTCGCTGGTGCAGGAACTGGAGGCCGAGACGAGGAAGAAAGATTCAGACATTATGCTGTTGAGAAGAGAGCTGTATGGTCTGAAGAGTGCAAATTCGAGACTGAATAAACAGATCAGTAGCAGCAAACCATCAGTTAACCATCATAAGGATTACTCCATTGTCCTGAAAAAATTGACGACGCCTAGTGCAGTCTTGGAGCTGTTCAAGGTTGCATCGACATCGGTGCATGATTTCGCAGAGCTGATCTTTAGCTTGATTTCCTCACCTGATCATCGCTGTCCCAACAATGCAGACGAACATTCACCATACAAGAGGTACTCACTGGAAGCTTACCTGTCACGGACAATGCTTGCAGTACATGATGGTGCTGAAGACGACGACGAACTCGATCTTGCTCGCTTCGATCGAATCATGAGATGCTGTGACCCTCTGGACGCGTTGATGGAGCACCCCAACTCCAGCTTCGCGAGGTTCTGTCGAACAAAGTACTTAGCGGCCGTGTCGTCAGAGATGGAGGCAGCTATGTTCAGAAATAATCTGGACGTGAGGGCGTTCGTGTCGCGAGGCGGGCACCCGAGGACGTGGTTCTACAGGGCGTTCGCGACGATGGCGAGGTCGGCGTGGGCGCTGCGGGTGGCGGTGACGGCGCGCCGGCGATGTTGTGGCCGTGGAAGTGTCAGGATGTTGTACGCGAGGAGAGGGAGCAGGTACGCGGCGGAGTACATGGACAGCGTCGTGGCCGCCGCCGCCGCCGCCGATGCTGGTCGTGGCGAAGGAGATGGAGTTGCATTCACCGTGACGCCGGGGATGAAGGTGGGTGAGACCATGGTGGCGTGCAGAGTGCTCCTCTGTCACGATCAACATGACACTATTTCTGATGAAACTGATCCCAAATTCAGATAG
More
|
|||||||
| Protein seq | MESRTPRSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0017600 | OsMH63_12T0017600.2 | Chr12 | 1080441 | 1082731 | - | maker | ||
| CDS seq | ATGGAGTCAAGAACACCAAGAAGTTCAGTTGCAAGGAGCACCTGTAATGTTCCTGGACTCGTATTAGGCTTCTCCAAACTCTGCAAAATCACAAAGATTTGTGCCGCGCCTGAATTTGCTGACACGAAGACAGAATTTGGAGATTATTGTGGCGGATATGATCAGAGGCTAGTTATCACAAGACTGTTTGAGGAAATCGGAGCTCTCAAGTCAACCTACATCAAGCTGCAGAAAGCTCATATCCCTTATAATCGTCCAAAGATTGCCTTCGCCGACGAGATCATCACCTACGAGCTCGACTCGGTCACTGCTCTACAGAGCTTATGCAGTTGGAATGGCAGCGTTGGGTCACTTATCAATGATCGATGGTCGCTGGTGCAGGAACTGGAGGCCGAGACGAGGAAGAAAGATTCAGACATTATGCTGTTGAGAAGAGAGCTGTATGGTCTGAAGAGTGCAAATTCGAGACTGAATAAACAGATCAGTAGCAGCAAACCATCAGTTAACCATCATAAGGATTACTCCATTGTCCTGAAAAAATTGACGACGCCTAGTGCAGTCTTGGAGCTGTTCAAGGTTGCATCGACATCGGTGCATGATTTCGCAGAGCTGATCTTTAGCTTGATTTCCTCACCTGATCATCGCTGTCCCAACAATGCAGACGAACATTCACCATACAAGAGGTACTCACTGGAAGCTTACCTGTCACGGACAATGCTTGCAGTACATGATGGTGCTGAAGACGACGACGAACTCGATCTTGCTCGCTTCGATCGAATCATGAGATGCTGTGACCCTCTGGACGCGTTGATGGAGCACCCCAACTCCAGCTTCGCGAGGTTCTGTCGAACAAAGTACTTAGCGGCCGTGTCGTCAGAGATGGAGGCAGCTATGTTCAGAAATAATCTGGACGTGAGGGCGTTCGTGTCGCGAGGCGGGCACCCGAGGACGTGGTTCTACAGGGCGTTCGCGACGATGGCGAGGTCGGCGTGGGCGCTGCGGGTGGCGGTGACGGCGCGCCGGCGATGTTGTGGCCGTGGAAGTGTCAGGATGTTGTACGCGAGGAGAGGGAGCAGGTACGCGGCGGAGTACATGGACAGCGTCGTGGCCGCCGCCGCCGCCGCCGATGCTGGTCGTGGCGAAGGAGATGGAGTTGCATTCACCGTGACGCCGGGGATGAAGGTGGGTGAGACCATGGTGGCGTGCAGAGTGCTCCTCTGTCACGATCAACATGACACTATTTCTGATGAAACTGATCCCAAATTCAGATAG
More
|
|||||||
| Protein seq | MESRTPRSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0017600 | OsMH63_12T0017600.3 | Chr12 | 1080441 | 1082657 | - | maker | ||
| CDS seq | ATGGAGTCAAGAACACCAAGAAGTTCAGTTGCAAGGAGCACCTGTAATGTTCCTGGACTCGTATTAGGCTTCTCCAAACTCTGCAAAATCACAAAGATTTGTGCCGCGCCTGAATTTGCTGACACGAAGACAGAATTTGGAGATTATTGTGGCGGATATGATCAGAGGCTAGTTATCACAAGACTGTTTGAGGAAATCGGAGCTCTCAAGTCAACCTACATCAAGCTGCAGAAAGCTCATATCCCTTATAATCGTCCAAAGATTGCCTTCGCCGACGAGATCATCACCTACGAGCTCGACTCGGTCACTGCTCTACAGAGCTTATGCAGTTGGAATGGCAGCGTTGGGTCACTTATCAATGATCGATGGTCGCTGGTGCAGGAACTGGAGGCCGAGACGAGGAAGAAAGATTCAGACATTATGCTGTTGAGAAGAGAGCTGTATGGTCTGAAGAGTGCAAATTCGAGACTGAATAAACAGATCAGTAGCAGCAAACCATCAGTTAACCATCATAAGGATTACTCCATTGTCCTGAAAAAATTGACGACGCCTAGTGCAGTCTTGGAGCTGTTCAAGGTTGCATCGACATCGGTGCATGATTTCGCAGAGCTGATCTTTAGCTTGATTTCCTCACCTGATCATCGCTGTCCCAACAATGCAGACGAACATTCACCATACAAGAGGTACTCACTGGAAGCTTACCTGTCACGGACAATGCTTGCAGTACATGATGGTGCTGAAGACGACGACGAACTCGATCTTGCTCGCTTCGATCGAATCATGAGATGCTGTGACCCTCTGGACGCGTTGATGGAGCACCCCAACTCCAGCTTCGCGAGGTTCTGTCGAACAAAGTACTTAGCGGCCGTGTCGTCAGAGATGGAGGCAGCTATGTTCAGAAATAATCTGGACGTGAGGGCGTTCGTGTCGCGAGGCGGGCACCCGAGGACGTGGTTCTACAGGGCGTTCGCGACGATGGCGAGGTCGGCGTGGGCGCTGCGGGTGGCGGTGACGGCGCGCCGGCGATGTTGTGGCCGTGGAAGTGTCAGGATGTTGTACGCGAGGAGAGGGAGCAGGTACGCGGCGGAGTACATGGACAGCGTCGTGGCCGCCGCCGCCGCCGCCGATGCTGGTCGTGGCGAAGGAGATGGAGTTGCATTCACCGTGACGCCGGGGATGAAGGTGGGTGAGACCATGGTGGCGTGCAGAGTGCTCCTCTGTCACGATCAACATGACACTATTTCTGATGAAACTGATCCCAAATTCAGATAG
More
|
|||||||
| Protein seq | MESRTPRSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.799832 | 0.1983645 | 0.9524685 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0113900 | SBH | 0.0 | 0.0 | 0.381288 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02230 | SBH | 0.0 | 0.0 | 0.093605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0113900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000880 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001080 | SBH | 0.0 | 0.0 | 0.209208 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001060 | SBH | 0.0 | 1.461944 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000900 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0001520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0013000 | RBH | 0.796069 | 0.294657 | 1.2688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0001510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0013000 | SBH | 0.9319415 | 0.0640455 | 13.4660675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000890 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0001560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0001540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001010 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001030 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001010 | SBH | 0.0 | 0.0 | 0.400049 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000990 | SBH | 0.0 | 0.0 | 0.000000 |
