Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0001010 | OGI:12003040 | 11/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:757913-759915 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttgctctttcgctttcctctctgcatagcatgcaagcagcagcagcagacttggaaatgtttcaattttagccgggggaaaccaggctatcctcttggtcactctgcaccaattcaattcagcatttcactggtcagtcccagcctccctctcaggtacttcatgcatgcttgctcttctacccttcatgttcaacaaataaacctgtttgtctgcaacattcttcttgctcctgcatagctctatctgttgtgtactgctttatccaattttatccattacaaccatgcaaatgcaaggctccaacttattgctcaaatctactagtacattgtagtgtctgaattttgttgtgcaagtgctcaaaacagtggagatggagcacaagatttgcatcatgcccatgtagtctgtggtttcctcttgggtttacatctcagaaaatgaaagatattgctgcatttggtctgtggtcataaacagaggtttgttagtctttctatcaaattagagaagtaaagcaagttcaaaccatcgattacattgattttctcgtagataattttaccatcctctcccatgtcgtctcaaagattcttcttttgtttcttggtttgcactgaatcagccccaatggagtcaagaacaccaagttcagttgcaaggagcacctgtaatgttcctggactcgtattaggcttctccaaactctgcaaaatcacaaagatttgtgccgcgcctgaatttgctgacacgaagacagaatttggagattattgtggcggatatgatcagaggctagttatcacaagactgtttgaggaaatcggagctctcaagtcaacctacatcaagctgcagaaagctcatatcccttataatcgtccaaagattgccttcgccgacgagatcatcacctacgagctcgactcggtcactgctctacagagcttatgcagttggaatggcagcgttgggtcacttatcaatgatcgatggtcgctggtgcaggaactggaggccgagacgaggaagaaagattcagacattatgctgttgagaagagagctgtatggtctgaagagtgcaaattcgagactgaataaacagatcagtagcagcaaaccatcagttaaccatcataaggattactccattgtcctgaaaaaattgacgacgcctagtgcagtcttggagctgttcaaggttgcatcgacatcggtgcatgatttcgcagagctgatctttagcttgatttcctcacctgatcatcgctgtcccaacaatgcagacgaacattcaccatacaagaggtactcactggaagcttacctgtcacggacaatgcttgcagtacatgatggtgctgaagacgacgacgaactcgatcttgctcgcttcgatcgaatcatgagatgctgtgaccctctggacgcgttgatggagcaccccaactccagcttcgcgaggttctgtcgaacaaagtacttagcggccgtgtcgtcagagatggaggcagctatgttcagaaataatctggacgtgagggcgttcgtgtcgcgaggcgggcacccgaggacgtggttctacagggcgttcgcgacgatggcgaggtcggcgtgggcgctgcgggtggcggtgacggcgcgccggcgatgttgtggccgtggaagtgtcaggatgttgtacgcgaggagagggagcaggtacgcggcggagtacatggacagcgtcgtggccgccgccgccgccgccgatgctggtcgtggcgaaggagatggagttgcattcaccgtgacgccggggatgaaggtgggtgagaccatggtggcgtgcagagtgctcctctgtcacgatcaacatgacactatttctgatgaaactgatcccaaattcagatagcagatggattgtgctgtactagagttcgctttaattttggccatgcagttgtactgaaaaaagaatgtcgaacatgttgtatattgtagtattctgtaat
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| CDS seq | atggagtcaagaacaccaagttcagttgcaaggagcacctgtaatgttcctggactcgtattaggcttctccaaactctgcaaaatcacaaagatttgtgccgcgcctgaatttgctgacacgaagacagaatttggagattattgtggcggatatgatcagaggctagttatcacaagactgtttgaggaaatcggagctctcaagtcaacctacatcaagctgcagaaagctcatatcccttataatcgtccaaagattgccttcgccgacgagatcatcacctacgagctcgactcggtcactgctctacagagcttatgcagttggaatggcagcgttgggtcacttatcaatgatcgatggtcgctggtgcaggaactggaggccgagacgaggaagaaagattcagacattatgctgttgagaagagagctgtatggtctgaagagtgcaaattcgagactgaataaacagatcagtagcagcaaaccatcagttaaccatcataaggattactccattgtcctgaaaaaattgacgacgcctagtgcagtcttggagctgttcaaggttgcatcgacatcggtgcatgatttcgcagagctgatctttagcttgatttcctcacctgatcatcgctgtcccaacaatgcagacgaacattcaccatacaagaggtactcactggaagcttacctgtcacggacaatgcttgcagtacatgatggtgctgaagacgacgacgaactcgatcttgctcgcttcgatcgaatcatgagatgctgtgaccctctggacgcgttgatggagcaccccaactccagcttcgcgaggttctgtcgaacaaagtacttagcggccgtgtcgtcagagatggaggcagctatgttcagaaataatctggacgtgagggcgttcgtgtcgcgaggcgggcacccgaggacgtggttctacagggcgttcgcgacgatggcgaggtcggcgtgggcgctgcgggtggcggtgacggcgcgccggcgatgttgtggccgtggaagtgtcaggatgttgtacgcgaggagagggagcaggtacgcggcggagtacatggacagcgtcgtggccgccgccgccgccgccgatgctggtcgtggcgaaggagatggagttgcattcaccgtgacgccggggatgaaggtgggtgagaccatggtggcgtgcagagtgctcctctgtcacgatcaacatgacactatttctgatgaaactgatcccaaattcagatag
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| Protein seq | MESRTPSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR |
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| Function | Protein GRAVITROPIC IN THE LIGHT 1 [UniProtKB/Swiss-Prot:F4KGE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0001010 | OsLiXu_12g0001010.01 | Chr12 | 757913 | 759915 | + | NAM | ||
| CDS seq | atggagtcaagaacaccaagttcagttgcaaggagcacctgtaatgttcctggactcgtattaggcttctccaaactctgcaaaatcacaaagatttgtgccgcgcctgaatttgctgacacgaagacagaatttggagattattgtggcggatatgatcagaggctagttatcacaagactgtttgaggaaatcggagctctcaagtcaacctacatcaagctgcagaaagctcatatcccttataatcgtccaaagattgccttcgccgacgagatcatcacctacgagctcgactcggtcactgctctacagagcttatgcagttggaatggcagcgttgggtcacttatcaatgatcgatggtcgctggtgcaggaactggaggccgagacgaggaagaaagattcagacattatgctgttgagaagagagctgtatggtctgaagagtgcaaattcgagactgaataaacagatcagtagcagcaaaccatcagttaaccatcataaggattactccattgtcctgaaaaaattgacgacgcctagtgcagtcttggagctgttcaaggttgcatcgacatcggtgcatgatttcgcagagctgatctttagcttgatttcctcacctgatcatcgctgtcccaacaatgcagacgaacattcaccatacaagaggtactcactggaagcttacctgtcacggacaatgcttgcagtacatgatggtgctgaagacgacgacgaactcgatcttgctcgcttcgatcgaatcatgagatgctgtgaccctctggacgcgttgatggagcaccccaactccagcttcgcgaggttctgtcgaacaaagtacttagcggccgtgtcgtcagagatggaggcagctatgttcagaaataatctggacgtgagggcgttcgtgtcgcgaggcgggcacccgaggacgtggttctacagggcgttcgcgacgatggcgaggtcggcgtgggcgctgcgggtggcggtgacggcgcgccggcgatgttgtggccgtggaagtgtcaggatgttgtacgcgaggagagggagcaggtacgcggcggagtacatggacagcgtcgtggccgccgccgccgccgccgatgctggtcgtggcgaaggagatggagttgcattcaccgtgacgccggggatgaaggtgggtgagaccatggtggcgtgcagagtgctcctctgtcacgatcaacatgacactatttctgatgaaactgatcccaaattcagatag
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| Protein seq | MESRTPSSVARSTCNVPGLVLGFSKLCKITKICAAPEFADTKTEFGDYCGGYDQRLVITRLFEEIGALKSTYIKLQKAHIPYNRPKIAFADEIITYELDSVTALQSLCSWNGSVGSLINDRWSLVQELEAETRKKDSDIMLLRRELYGLKSANSRLNKQISSSKPSVNHHKDYSIVLKKLTTPSAVLELFKVASTSVHDFAELIFSLISSPDHRCPNNADEHSPYKRYSLEAYLSRTMLAVHDGAEDDDELDLARFDRIMRCCDPLDALMEHPNSSFARFCRTKYLAAVSSEMEAAMFRNNLDVRAFVSRGGHPRTWFYRAFATMARSAWALRVAVTARRRCCGRGSVRMLYARRGSRYAAEYMDSVVAAAAAADAGRGEGDGVAFTVTPGMKVGETMVACRVLLCHDQHDTISDETDPKFR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0113900 | RBH | 0.0 | 0.0 | 0.381288 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02230 | RBH | 0.0 | 0.0 | 0.093605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0113900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000880 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001080 | RBH | 0.0 | 0.0 | 0.209208 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001060 | RBH | 0.0 | 1.461944 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000900 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001000 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0013000 | SBH | 0.796069 | 0.294657 | 1.2688 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001000 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0013000 | RBH | 0.9319415 | 0.0640455 | 13.4660675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001000 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001000 | RBH | 0.139233 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001010 | RBH | 0.0 | 0.906321 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001090 | RBH | 0.0 | 0.0 | 0.0 |
