Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0385500 | OGI:11073020 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:29132349-29133787 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTTTGAAGATGGAGCCACTCCTGAGCTCAGGAATATTATCTTGTTCTTGGAAAATGTAAGGTCTCTTAAATTACTCGGCAGTCTTCCAAGATTGATGGAGCTTGAGCTGAATGGCAGCAACAAGCATGTCCTCCTTCCATTGTTGAAGGAAAGTGCCAATCGAATTGCCAAGGTCATTCTTTGTAATTTAGGAGAGGAATTTGGGGATTTTCCACAGTTCATTGATCTACCCCTGAAGGGGAAATATAAATATGTACAAAAGAGATGCGAAAATACTAAACTACCCCTAATATCTTAACACCCCCACTCAAATGCAATGTGTATACAATAATATTGCATTTGGAGTGTAACTAAACATGAGAACACAAACTAAATATTAGCCTATCTTCAAAGTCTTGATGATGTCGTCAAAGTGTGCCAATTCTTAGATGATGATGAAGAAAAGATATATCCCCTTCTCAATGAAGTGGATCTCGGAGCCTTTACAAACTGTTCTTCGGCCCTTGGTACCTTGAAGCCTTCACGAACCGTTCTTCGGCTCTTCATTGATTTGGAGATGTGGTTGATGATGATGATGACAATGGACCTTCACAAACTGTTCTTCGGTCCTTTGACTGATGATGATGTTGATGAAGGCCCTTCACAAACTGTTCTTCGGACCTTCGCTGATTGATGATGATCATGATGACAAGCTCCGACATGGAGACGATGAAGTGACAATGAAGGCCAGTTCCAATGGGGAGCTGGTGATGATGAAAGCCAACTCTGACAGGGAGTTGGTGGTGTAGAAAAGACGATGAAGAGATGAACTGGCATAACTTTGACAAATTGAATGATATGCAATGGACTTTGGTAGATGGACACTATGAATTTTAGATGAAAAAGAGACAATATTGTAACAGCAGACACCTAGCAAAAGTCGCACTGTGATGATAAACCTGACTAAGATGATAGCACAACAGAGATGATATAATGACACAACTTGGCAGACTAAAATCAAAAGGATGGATTTGATGAACAAACAGAGATATCACATTGTACTATGGAATATGGATAGGCATCAGCAATAAGCACATCAATGCAGCAAGCAGAAATGATGGTAGTATATGGGAAGGGTTCGATCTGACACTATGATAGACCAAAAGACAAACCGGAATGTCTGCTGCTAGCTTTGCTGAACGACAGCGCATACTACTGCAGCAAGCTCGATGGAAGTCCAAAAAATGGTTACTGCTTGAAGATGGCCTCGTCCGGTGCAGCAGCATGAGCAGAACATCCACACACGCAGATGCAGACATGGGGACAAATTGTCACGACGACGGCCTGGATGGGGCGCCGCGACGGGCGGCGGGCACAAGGACAAAAGCCGGCGGGAGGAGTGGCACAGACTGGCGATGGGGCCAGTGGCAGCCTCCCACGATTGACGACGGAGAATGA
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| CDS seq | ATGTTTGAAGATGGAGCCACTCCTGAGCTCAGGAATATTATCTTGTTCTTGGAAAATGTAAGGTCTCTTAAATTACTCGGCAGTCTTCCAAGATTGATGGAGCTTGAGCTGAATGGCAGCAACAAGCATGTCCTCCTTCCATTGTTGAAGGAAAGTGCCAATCGAATTGCCAAGGCCCTTCACAAACTGTTCTTCGGACCTTCGCTGATTGATGATGATCATGATGACAAGCTCCGACATGGAGACGATGAAGTGACAATGAAGGCCAGTTCCAATGGGGAGCTGGTGATGATGAAAGCCAACTCTGACAGGGAGTTGGTGACCAAAAGACAAACCGGAATGTCTGCTGCTAGCTTTGCTGAACGACAGCGCATACTACTGCAGCAAGCTCGATGGAAGTCCAAAAAATGGTTACTGCTTGAAGATGGCCTCGTCCGGTGCAGCAGCATGAGCAGAACATCCACACACGCAGATGCAGACATGGGGACAAATTGTCACGACGACGGCCTGGATGGGGCGCCGCGACGGGCGGCGGGCACAAGGACAAAAGCCGGCGGGAGGAGTGGCACAGACTGGCGATGGGGCCAGTGGCAGCCTCCCACGATTGACGACGGAGAATGA
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| Protein seq | MFEDGATPELRNIILFLENVRSLKLLGSLPRLMELELNGSNKHVLLPLLKESANRIAKALHKLFFGPSLIDDDHDDKLRHGDDEVTMKASSNGELVMMKANSDRELVTKRQTGMSAASFAERQRILLQQARWKSKKWLLLEDGLVRCSSMSRTSTHADADMGTNCHDDGLDGAPRRAAGTRTKAGGRSGTDWRWGQWQPPTIDDGE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0385500 | OsMH63_11T0385500.1 | Chr11 | 29132349 | 29133787 | + | maker | ||
| CDS seq | ATGTTTGAAGATGGAGCCACTCCTGAGCTCAGGAATATTATCTTGTTCTTGGAAAATGTAAGGTCTCTTAAATTACTCGGCAGTCTTCCAAGATTGATGGAGCTTGAGCTGAATGGCAGCAACAAGCATGTCCTCCTTCCATTGTTGAAGGAAAGTGCCAATCGAATTGCCAAGGCCCTTCACAAACTGTTCTTCGGACCTTCGCTGATTGATGATGATCATGATGACAAGCTCCGACATGGAGACGATGAAGTGACAATGAAGGCCAGTTCCAATGGGGAGCTGGTGATGATGAAAGCCAACTCTGACAGGGAGTTGGTGACCAAAAGACAAACCGGAATGTCTGCTGCTAGCTTTGCTGAACGACAGCGCATACTACTGCAGCAAGCTCGATGGAAGTCCAAAAAATGGTTACTGCTTGAAGATGGCCTCGTCCGGTGCAGCAGCATGAGCAGAACATCCACACACGCAGATGCAGACATGGGGACAAATTGTCACGACGACGGCCTGGATGGGGCGCCGCGACGGGCGGCGGGCACAAGGACAAAAGCCGGCGGGAGGAGTGGCACAGACTGGCGATGGGGCCAGTGGCAGCCTCCCACGATTGACGACGGAGAATGA
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| Protein seq | MFEDGATPELRNIILFLENVRSLKLLGSLPRLMELELNGSNKHVLLPLLKESANRIAKALHKLFFGPSLIDDDHDDKLRHGDDEVTMKASSNGELVMMKANSDRELVTKRQTGMSAASFAERQRILLQQARWKSKKWLLLEDGLVRCSSMSRTSTHADADMGTNCHDDGLDGAPRRAAGTRTKAGGRSGTDWRWGQWQPPTIDDGE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.041331 | 0.0418815 | 0.0322085 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42720 | SBH | 0.077160 | 0.202499 | 0.036942 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021940 | RBH | 0.0 | 0.0 | 1.082294 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021790 | SBH | 0.0 | 0.0 | 0.894479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021250 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021750 | SBH | 0.0 | 25.048176 | 17.467442 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022320 | SBH | 0.0 | 2.555636 | 1.250390 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405400 | RBH | 0 | 0 | 0.085393 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023460 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022220 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021440 | SBH | 0.0 | 0.0 | 0.567018 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021610 | SBH | 0.0 | 12.752687 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021660 | SBH | 0.0 | 8.260716 | 3.062310 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022150 | RBH | 0.0 | 0.000000 | 0.0 |
