Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0023460 | OGI:11073050 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29231964-29235718 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagagcatcaacagcttcctcgcgcgcctggccaagacggccaccgccggcatcgcgcaggatgacgacgacgagcaactccgcacgtggatgaagcaggtccgggagctcgcccacgactgcagcaactgcatcgacatctacctgcggcgcggtgacccgggccacccggcgatccaccgcgccaggggcggcggcttgcggcgctacctgtggtgggcttcttggttcgtgcacaggatggtcgcgcagcgcagcgcggccatccagctgcgcgatctcaaggaacgggcgcgcgacgtcagcgagcggcggtcgaggtacgacgtgaaggtcccggagaaggaggcagcaggagggcccgctagtactccggcgctggccgcagaggacgaagacgacgatcaaaatcaagctatagagttggccaactactgttccggtcccggatctctagagcctcgcgttctggaggactactgtgccgagaagctagtcggctggttgaagctgcaagctgatcaagccggaacttctgcatctaggctgttgataccatccatcaccttggttgcaccggatacggaggactccggctccattgcacgtgaagttctagatttggcggccatcaatttcgaccaaactgtttgcatcaacctcccacaagtgcacaggtcatgggatcttccgctactgccccaggagatcctctgctacatcctgcaagcttgctcctaccggaaaaatttgttagatccacaagccaaaggtgaaggagagacattagagccgtccaaaattagagcgaaagcttactcctaccggaaaaatttgttagatcaaatcggccaaatgattggagaaatcgattttaacgacaagattgaagaaatcaagagcaagattggacaggtcgagaccaaatggtcaaagaacacctccgggaaacataaactgatgatcttaggcgtgcttcaccaggcgctgacgctcatacagattgggccagacatgcagatgccattatcgtgggaggagatcatggatgagacggccaggatgcttaaatataatatcgaagcagtggacaccacggCcccggttattctcgaaattacccaatataaaagagaaattttaccatccttaaaacaatatcttaagatacaaacattttacattaaaaattttagtatctcgggatacctggatacctagtacctaaaggtatcatatttttataatagaaaatacagtacctctctcagtattttttcaaggatgataaaattacccaatatagaaacataatgtattctcggccaaaaacaaggttgaggaagccagaactactactgctcctgcactgggcgaggatcacatcaaagaaatcatccacaaccacaagattgcattagacatcatacgagagctgatgcgaggcaactctggcaaggaacaagccacatgtttcctgggtgggatcatggaccacgatgctaccgctgatgcgaaagaagaagcaaagcagaagatggatgatatctcgctggggattgaggagcagctgcacatcaaaggggttgcagacaagattaacaagtacatgacaggtaaaaagaccctgattgtctttcaagatgatagggactgcatatccccatgggaggacacaagaaatgctttgagccttataaactgctcctccgggatcgagtgcagtgatggtgaccacaaacaagagccagagggcaaaagaattttgctgcccaccgggagagcctataacctactcccttgttggcctctacaacgacattatactccagcttgccacagagaagaggaagcgcgatggcagctacgatccccagattctccatggcatcttggagaagtgtgactccacaagaattcgccatgaagatcttcgtgcatgatctgtacgctaacccaaataggagtagccaagatctgcgcaagcttcatgacgacctggattcctgcaagtcagtgggtgaagtaataatattgctaacaagatgatgctcaagttctcctacaacaacctgcctagagcatacaaatcctgcttgctgtacctggccatttttccccctggtttcaacattaggcgatcgaacttggtaggacggtgggttgcagaagggctaataaccaaggaagactgggcgagtgtagtacggcatgcggagcaatgttttgacacgctcatcgaccggtggcttgtttactctgcagaagttggtgctaccggaggggtcaagagctgcatcgtgggtgataaagcccatgagttcatcagcaagatcgccacgaaagagcacattctggacgcacgcctgtcacatatctgggctcgccacttctccatcttcagtgacctccaactgcgagcctttgacagCatcgacaagtttgtccgcaagcttcctaactattctcatcaattgccgcaagttcttcaacaagaatagccacctcgagcatctgcaacaacatactacttctcaagtatctgagcctaaggaaaacaaacgttacccatctaccccgtgaaatcaataaccttcacgagctggagatattggatatccgagaaaccaaggtgcctgcttctggaacaagatatgtactgctcctaaagctgaaacgcctgctggctggtcacgttgattcgagctcgagctgcagccatgatattagggatgacaagtcactgtactctgccgttaagattccttccaacatcaggaaaatggataacatggaggtattgtccaacgtcgtggcttcacaggatggccatgagttggaagatattagaaagctgtggcggctgaggaagcttggtgtggttatcgaagacaagaaagctcaccttgagaaattacttcgagtgattagtgacctgaaagaccgcatccagtctctttcaatccctatacatacagatagaagcgagggcactctctcttacgaagggttatcactagaaaataatgttcgagatcgattggaaaaaaattccaaatgtcttgagagcttaagcatcaacggagtcacacgtttagagaagcatctctcgttgctgaccaaaggtggcaacgaacttaccaagctaactctgacaagcatcttgctgaaccaggacaatatgaagaaccttgctgtgctgcccaatttacgttgtgttaggctgcgataccaggcatacaccggggatagtctcaccttcaagaaggatgaattccaatgtctcaattgctttcttgttgatggcctccacatgactgaaatcattgactttgagagtggagcagctcttgagctcgagaagatcgccttgtccctcaatagcataaattctcttgttggggctggttcccttaaaaatcagaaggagctagagttgaagggcagcgagatattacctcttccattgctggctgaagatggagcggctcctgagcaacgtacagaggaggaccgcatgctcaccttcaagaagatggaattccaacatctcaagcacttgcttgtcgaggcttcactcatgaccaaaatcatcttcaaagatggagccgctcctaaactcaagaagatcaccttgtccttggataatataatgtctcttgatggggtcagcaatcttccaaaattgacggagctcgagttggaGggccacaataatctgattctcctttcatgtttttaataacaatgcc
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| CDS seq | atggagagcatcaacagcttcctcgcgcgcctggccaagacggccaccgccggcatcgcgcaggatgacgacgacgagcaactccgcacgtggatgaagcaggtccgggagctcgcccacgactgcagcaactgcatcgacatctacctgcggcgcggtgacccgggccacccggcgatccaccgcgccaggggcggcggcttgcggcgctacctgtggtgggcttcttggttcgtgcacaggatggtcgcgcagcgcagcgcggccatccagctgcgcgatctcaaggaacgggcgcgcgacgtcagcgagcggcggtcgaggtacgacgtgaaggtcccggagaaggaggcagcaggagggcccgctagtactccggcgctggccgcagaggacgaagacgacgatcaaaatcaagctatagagttggccaactactgttccggtcccggatctctagagcctcgcgttctggaggactactgtgccgagaagctagtcggctggttgaagctgcaagctgatcaagccggaacttctgcatctaggctgttgataccatccatcaccttggttgcaccggatacggaggactccggctccattgcacgtgaagttctagatttggcggccatcaatttcgaccaaactgtttgcatcaacctcccacaagtgcacaggtcatgggatcttccgctactgccccaggagatcctctgctacatcctgcaagcttgctcctaccggaaaaatttgttagatccacaagccaaaggtgaaggagagacattagagccgtccaaaattagagcgaaagcttactcctaccggaaaaatttgttagatcaaatcggccaaatgattggagaaatcgattttaacgacaagattgaagaaatcaagagcaagattggacagattgcattagacatcatacgagagctgatgcgaggcaactctggcaaggaacaagccacatgtttcctgggtgggatcatggaccacgatgctaccgctgatgcgaaagaagaagcaaagcagaagatggatgatatctcgctggggattgaggagcagctgcacatcaaaggggttgcagacaagattaacaagtacatgacagtgatggtgaccacaaacaagagccagagggcaaaagaattttgctgcccaccgggagagcctataacctactcccttgttggcctctacaacgacattatactccagcttgccacagagaagaggaagcgcgatggcagctacgatccccagattctccatggcatcttggagaagcgatcgaacttggtaggacggtgggttgcagaagggctaataaccaaggaagactgggcgagtgtagtacggcatgcggagcaatgttttgacacgctcatcgaccggtggcttgtttactctgcagaagttggtgctaccggaggggtcaagagctgcatcgtgggtgataaagcccatgagttcatcagcaagatcgccacgaaagagcacattctggacgcacgcctgtcacatatctgggctcgccacttctccatcttcagtgacctccaactgcgagcctttgacagCatcgacaagtttgtccgcaagcttcctaactattctcatcaattgccgcaatatctgagcctaaggaaaacaaacgttacccatctaccccgtgaaatcaataaccttcacgagctggagatattggatatccgagaaaccaaggtgcctgcttctggaacaagatatgtactgctcctaaagctgaaacgcctgctggctggtcacgttgattcgagctcgagctgcagccatgatattagggatgacaagtcactgtactctgccgttaagattccttccaacatcaggaaaatggataacatggaggtattgtccaacgtcgtggcttcacaggatggccatgagttggaagatattagaaagctgtggcggctgaggaagcttggtgtggttatcgaagacaagaaagctcaccttgagaaattacttcgagtgattagtgacctgaaagaccgcatccagtctctttcaatccctatacatacagatagaagcgagggcactctctcttacgaagggttatcactagaaaataatgttcgagatcgattggaaaaaaattccaaatgtcttgagagcttaagcatcaacggagtcacacgtttagagaagcatctctcgttgctgaccaaaggtggcaacgaacttaccaagctaactctgacaagcatcttgctgaaccaggacaatatgaagaaccttgctgtgctgcccaatttacgttgtgttaggctgcgataccaggcatacaccggggatagtctcaccttcaagaaggatgaattccaatgtctcaattgctttcttgttgatggcctccacatgactgaaatcattgactttgagagtggagcagctcttgagctcgagaagatcgccttgtccctcaatagcataaattctcttgttggggctggttcccttaaaaatcagaaggagctagagttgaagggcagcgagatattacctcttccattgctggctgaagatggagcggctcctgagcaacgtacagaggaggaccgcatgctcaccttcaagaagatggaattccaacatctcaagcacttgcttgtcgaggcttcactcatgaccaaaatcatcttcaaagatggagccgctcctaaactcaagaagatcaccttgtccttggataatataatgtctcttgatggggtcagcaatcttccaaaattgacggagctcgagttggaGggccacaataatctgattctcctttcatgtttttaa
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| Protein seq | MESINSFLARLAKTATAGIAQDDDDEQLRTWMKQVRELAHDCSNCIDIYLRRGDPGHPAIHRARGGGLRRYLWWASWFVHRMVAQRSAAIQLRDLKERARDVSERRSRYDVKVPEKEAAGGPASTPALAAEDEDDDQNQAIELANYCSGPGSLEPRVLEDYCAEKLVGWLKLQADQAGTSASRLLIPSITLVAPDTEDSGSIAREVLDLAAINFDQTVCINLPQVHRSWDLPLLPQEILCYILQACSYRKNLLDPQAKGEGETLEPSKIRAKAYSYRKNLLDQIGQMIGEIDFNDKIEEIKSKIGQIALDIIRELMRGNSGKEQATCFLGGIMDHDATADAKEEAKQKMDDISLGIEEQLHIKGVADKINKYMTVMVTTNKSQRAKEFCCPPGEPITYSLVGLYNDIILQLATEKRKRDGSYDPQILHGILEKRSNLVGRWVAEGLITKEDWASVVRHAEQCFDTLIDRWLVYSAEVGATGGVKSCIVGDKAHEFISKIATKEHILDARLSHIWARHFSIFSDLQLRAFDSIDKFVRKLPNYSHQLPQYLSLRKTNVTHLPREINNLHELEILDIRETKVPASGTRYVLLLKLKRLLAGHVDSSSSCSHDIRDDKSLYSAVKIPSNIRKMDNMEVLSNVVASQDGHELEDIRKLWRLRKLGVVIEDKKAHLEKLLRVISDLKDRIQSLSIPIHTDRSEGTLSYEGLSLENNVRDRLEKNSKCLESLSINGVTRLEKHLSLLTKGGNELTKLTLTSILLNQDNMKNLAVLPNLRCVRLRYQAYTGDSLTFKKDEFQCLNCFLVDGLHMTEIIDFESGAALELEKIALSLNSINSLVGAGSLKNQKELELKGSEILPLPLLAEDGAAPEQRTEEDRMLTFKKMEFQHLKHLLVEASLMTKIIFKDGAAPKLKKITLSLDNIMSLDGVSNLPKLTELELEGHNNLILLSCF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0023460 | OsLima_11g0023460.01 | Chr11 | 29231964 | 29235718 | + | NAM | ||
| CDS seq | atggagagcatcaacagcttcctcgcgcgcctggccaagacggccaccgccggcatcgcgcaggatgacgacgacgagcaactccgcacgtggatgaagcaggtccgggagctcgcccacgactgcagcaactgcatcgacatctacctgcggcgcggtgacccgggccacccggcgatccaccgcgccaggggcggcggcttgcggcgctacctgtggtgggcttcttggttcgtgcacaggatggtcgcgcagcgcagcgcggccatccagctgcgcgatctcaaggaacgggcgcgcgacgtcagcgagcggcggtcgaggtacgacgtgaaggtcccggagaaggaggcagcaggagggcccgctagtactccggcgctggccgcagaggacgaagacgacgatcaaaatcaagctatagagttggccaactactgttccggtcccggatctctagagcctcgcgttctggaggactactgtgccgagaagctagtcggctggttgaagctgcaagctgatcaagccggaacttctgcatctaggctgttgataccatccatcaccttggttgcaccggatacggaggactccggctccattgcacgtgaagttctagatttggcggccatcaatttcgaccaaactgtttgcatcaacctcccacaagtgcacaggtcatgggatcttccgctactgccccaggagatcctctgctacatcctgcaagcttgctcctaccggaaaaatttgttagatccacaagccaaaggtgaaggagagacattagagccgtccaaaattagagcgaaagcttactcctaccggaaaaatttgttagatcaaatcggccaaatgattggagaaatcgattttaacgacaagattgaagaaatcaagagcaagattggacagattgcattagacatcatacgagagctgatgcgaggcaactctggcaaggaacaagccacatgtttcctgggtgggatcatggaccacgatgctaccgctgatgcgaaagaagaagcaaagcagaagatggatgatatctcgctggggattgaggagcagctgcacatcaaaggggttgcagacaagattaacaagtacatgacagtgatggtgaccacaaacaagagccagagggcaaaagaattttgctgcccaccgggagagcctataacctactcccttgttggcctctacaacgacattatactccagcttgccacagagaagaggaagcgcgatggcagctacgatccccagattctccatggcatcttggagaagcgatcgaacttggtaggacggtgggttgcagaagggctaataaccaaggaagactgggcgagtgtagtacggcatgcggagcaatgttttgacacgctcatcgaccggtggcttgtttactctgcagaagttggtgctaccggaggggtcaagagctgcatcgtgggtgataaagcccatgagttcatcagcaagatcgccacgaaagagcacattctggacgcacgcctgtcacatatctgggctcgccacttctccatcttcagtgacctccaactgcgagcctttgacagCatcgacaagtttgtccgcaagcttcctaactattctcatcaattgccgcaatatctgagcctaaggaaaacaaacgttacccatctaccccgtgaaatcaataaccttcacgagctggagatattggatatccgagaaaccaaggtgcctgcttctggaacaagatatgtactgctcctaaagctgaaacgcctgctggctggtcacgttgattcgagctcgagctgcagccatgatattagggatgacaagtcactgtactctgccgttaagattccttccaacatcaggaaaatggataacatggaggtattgtccaacgtcgtggcttcacaggatggccatgagttggaagatattagaaagctgtggcggctgaggaagcttggtgtggttatcgaagacaagaaagctcaccttgagaaattacttcgagtgattagtgacctgaaagaccgcatccagtctctttcaatccctatacatacagatagaagcgagggcactctctcttacgaagggttatcactagaaaataatgttcgagatcgattggaaaaaaattccaaatgtcttgagagcttaagcatcaacggagtcacacgtttagagaagcatctctcgttgctgaccaaaggtggcaacgaacttaccaagctaactctgacaagcatcttgctgaaccaggacaatatgaagaaccttgctgtgctgcccaatttacgttgtgttaggctgcgataccaggcatacaccggggatagtctcaccttcaagaaggatgaattccaatgtctcaattgctttcttgttgatggcctccacatgactgaaatcattgactttgagagtggagcagctcttgagctcgagaagatcgccttgtccctcaatagcataaattctcttgttggggctggttcccttaaaaatcagaaggagctagagttgaagggcagcgagatattacctcttccattgctggctgaagatggagcggctcctgagcaacgtacagaggaggaccgcatgctcaccttcaagaagatggaattccaacatctcaagcacttgcttgtcgaggcttcactcatgaccaaaatcatcttcaaagatggagccgctcctaaactcaagaagatcaccttgtccttggataatataatgtctcttgatggggtcagcaatcttccaaaattgacggagctcgagttggaGggccacaataatctgattctcctttcatgtttttaa
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| Protein seq | MESINSFLARLAKTATAGIAQDDDDEQLRTWMKQVRELAHDCSNCIDIYLRRGDPGHPAIHRARGGGLRRYLWWASWFVHRMVAQRSAAIQLRDLKERARDVSERRSRYDVKVPEKEAAGGPASTPALAAEDEDDDQNQAIELANYCSGPGSLEPRVLEDYCAEKLVGWLKLQADQAGTSASRLLIPSITLVAPDTEDSGSIAREVLDLAAINFDQTVCINLPQVHRSWDLPLLPQEILCYILQACSYRKNLLDPQAKGEGETLEPSKIRAKAYSYRKNLLDQIGQMIGEIDFNDKIEEIKSKIGQIALDIIRELMRGNSGKEQATCFLGGIMDHDATADAKEEAKQKMDDISLGIEEQLHIKGVADKINKYMTVMVTTNKSQRAKEFCCPPGEPITYSLVGLYNDIILQLATEKRKRDGSYDPQILHGILEKRSNLVGRWVAEGLITKEDWASVVRHAEQCFDTLIDRWLVYSAEVGATGGVKSCIVGDKAHEFISKIATKEHILDARLSHIWARHFSIFSDLQLRAFDSIDKFVRKLPNYSHQLPQYLSLRKTNVTHLPREINNLHELEILDIRETKVPASGTRYVLLLKLKRLLAGHVDSSSSCSHDIRDDKSLYSAVKIPSNIRKMDNMEVLSNVVASQDGHELEDIRKLWRLRKLGVVIEDKKAHLEKLLRVISDLKDRIQSLSIPIHTDRSEGTLSYEGLSLENNVRDRLEKNSKCLESLSINGVTRLEKHLSLLTKGGNELTKLTLTSILLNQDNMKNLAVLPNLRCVRLRYQAYTGDSLTFKKDEFQCLNCFLVDGLHMTEIIDFESGAALELEKIALSLNSINSLVGAGSLKNQKELELKGSEILPLPLLAEDGAAPEQRTEEDRMLTFKKMEFQHLKHLLVEASLMTKIIFKDGAAPKLKKITLSLDNIMSLDGVSNLPKLTELELEGHNNLILLSCF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0579200 | SBH | 0.383023 | 0.411186 | 0.561692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42570 | SBH | 0.097622 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0579200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023230 | RBH | 0.087804 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021910 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021790 | SBH | 0.0 | 0.0 | 0.894479 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022640 | RBH | 0.052206 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021770 | SBH | 0.378220 | 0.199136 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0385700 | SBH | 0 | 0.065779 | 0.0386035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019790 | SBH | 0.000000 | 0.091162 | 0.194367 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0426300 | RBH | 0.1331 | 0 | 0.0927805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022230 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021880 | SBH | 0.0 | 1.393880 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018930 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021700 | SBH | 0.000000 | 0.0 | 0.079685 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022180 | SBH | 0.000000 | 0.909686 | 0.673293 |
