Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0579200 | OGI:11066590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:21872063-21873054 | ||||||||
| Gene Symbol | Pb1 | ||||||||||
| DNA seq | GGGAGCCATCAGCGGCCATGACCGAGCTCGCGGCTGGCGCCGTGAGCTCACTGCTGGTGGTCATCCGCAACGAGGCTGTGCTGCTTGGCGGCGTCCGGGACGATGTGCAGTTCATCAAGGAGGAGATGGAGAGCATGAACAGCTTCCTAGGGCACCTAGCCAGGAGCGCGCCGCAGGGTGGAGAGCACGACGAGCAGGTGCGCACCTGGATGAACCAGGTGCGCCTGCTCGCGCAGGACTGCAACAACTGCATCGACCTCTACCTCTACAGCGGGAACCCGGAGATCCACCGTGCCAAAGGTAGACTCCGGCGACACCTCTGGTGGGTCTACTGGTCCCTGCGCAAGATGGTCGCGCAGCACCGAGCGGCCATCCAGCTCCGCCAGCTCAAGGACCGGGCGCGGGACGTCGGCGAGCGACGACTGAGGTATGGCGTTGAGATCCCAGCCACGACGAAGGCGGCCGCACCTGATGCAACAGGTGGCTATGCTGCTGGGGACGATGAAGAAGAAGATGAAGATGACCGCGAAGGACAATTTGCTGTGGCAACACCAACGTTGGCCCATCATTCTGCTCGATGGCCCGTCTTTGAGCCCCCTTCTCTGGACGACTACGTGAAGGCCAAGTTATTGGAGTGGATTGAGGGAGTTCCTGGAAACGCCATCGTGACGTTGTCCATCGCCATTGTAGCACCAGATGCAGATAATAAGGAAGTCCTTGCTATTGCACATGAAACTTTGGTTGCTCCAGACTACTACTACCGTCGCAGTATCATGGTCAACGTCCCGGCGGTGCACCTTGATTTTTTACCGCTTCGACCCAAGGAGGTCCTCTACTACATCTTGCGGGAGCTCGAGCGGGAAGAAGCGGCCGGATCGCAGAAGCAGCCCACAGATCAAGGTGAATGGGAGGAGGAGGATCCTGACCCTTGGCAAGATTACTACAAAAAATGTGGCATTTACCGTAGCAAAAAAGGTGTGCTCGATAAAATC
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| CDS seq | ATGACCGAGCTCGCGGCTGGCGCCGTGAGCTCACTGCTGGTGGTCATCCGCAACGAGGCTGTGCTGCTTGGCGGCGTCCGGGACGATGTGCAGTTCATCAAGGAGGAGATGGAGAGCATGAACAGCTTCCTAGGGCACCTAGCCAGGAGCGCGCCGCAGGGTGGAGAGCACGACGAGCAGGTGCGCACCTGGATGAACCAGGTGCGCCTGCTCGCGCAGGACTGCAACAACTGCATCGACCTCTACCTCTACAGCGGGAACCCGGAGATCCACCGTGCCAAAGGTAGACTCCGGCGACACCTCTGGTGGGTCTACTGGTCCCTGCGCAAGATGGTCGCGCAGCACCGAGCGGCCATCCAGCTCCGCCAGCTCAAGGACCGGGCGCGGGACGTCGGCGAGCGACGACTGAGGTATGGCGTTGAGATCCCAGCCACGACGAAGGCGGCCGCACCTGATGCAACAGGTGGCTATGCTGCTGGGGACGATGAAGAAGAAGATGAAGATGACCGCGAAGGACAATTTGCTGTGGCAACACCAACGTTGGCCCATCATTCTGCTCGATGGCCCGTCTTTGAGCCCCCTTCTCTGGACGACTACGTGAAGGCCAAGTTATTGGAGTGGATTGAGGGAGTTCCTGGAAACGCCATCGTGACGTTGTCCATCGCCATTGTAGCACCAGATGCAGATAATAAGGAAGTCCTTGCTATTGCACATGAAACTTTGGTTGCTCCAGACTACTACTACCGTCGCAGTATCATGGTCAACGTCCCGGCGGTGCACCTTGATTTTTTACCGCTTCGACCCAAGGAGGTCCTCTACTACATCTTGCGGGAGCTCGAGCGGGAAGAAGCGGCCGGATCGCAGAAGCAGCCCACAGATCAAGGTGAATGGGAGGAGGAGGATCCTGACCCTTGGCAAGATTACTACAAAAAATGTGGCATTTACCGTAGCAAAAAAGGTGTGCTCGATAAAATC
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| Protein seq | MTELAAGAVSSLLVVIRNEAVLLGGVRDDVQFIKEEMESMNSFLGHLARSAPQGGEHDEQVRTWMNQVRLLAQDCNNCIDLYLYSGNPEIHRAKGRLRRHLWWVYWSLRKMVAQHRAAIQLRQLKDRARDVGERRLRYGVEIPATTKAAAPDATGGYAAGDDEEEDEDDREGQFAVATPTLAHHSARWPVFEPPSLDDYVKAKLLEWIEGVPGNAIVTLSIAIVAPDADNKEVLAIAHETLVAPDYYYRRSIMVNVPAVHLDFLPLRPKEVLYYILRELEREEAAGSQKQPTDQGEWEEEDPDPWQDYYKKCGIYRSKKGVLDKI |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0579200 | OsNip_11t0579200-01 | Chr11 | 21872063 | 21873054 | + | RAP2018-11-26 | ||
| CDS seq | ATGACCGAGCTCGCGGCTGGCGCCGTGAGCTCACTGCTGGTGGTCATCCGCAACGAGGCTGTGCTGCTTGGCGGCGTCCGGGACGATGTGCAGTTCATCAAGGAGGAGATGGAGAGCATGAACAGCTTCCTAGGGCACCTAGCCAGGAGCGCGCCGCAGGGTGGAGAGCACGACGAGCAGGTGCGCACCTGGATGAACCAGGTGCGCCTGCTCGCGCAGGACTGCAACAACTGCATCGACCTCTACCTCTACAGCGGGAACCCGGAGATCCACCGTGCCAAAGGTAGACTCCGGCGACACCTCTGGTGGGTCTACTGGTCCCTGCGCAAGATGGTCGCGCAGCACCGAGCGGCCATCCAGCTCCGCCAGCTCAAGGACCGGGCGCGGGACGTCGGCGAGCGACGACTGAGGTATGGCGTTGAGATCCCAGCCACGACGAAGGCGGCCGCACCTGATGCAACAGGTGGCTATGCTGCTGGGGACGATGAAGAAGAAGATGAAGATGACCGCGAAGGACAATTTGCTGTGGCAACACCAACGTTGGCCCATCATTCTGCTCGATGGCCCGTCTTTGAGCCCCCTTCTCTGGACGACTACGTGAAGGCCAAGTTATTGGAGTGGATTGAGGGAGTTCCTGGAAACGCCATCGTGACGTTGTCCATCGCCATTGTAGCACCAGATGCAGATAATAAGGAAGTCCTTGCTATTGCACATGAAACTTTGGTTGCTCCAGACTACTACTACCGTCGCAGTATCATGGTCAACGTCCCGGCGGTGCACCTTGATTTTTTACCGCTTCGACCCAAGGAGGTCCTCTACTACATCTTGCGGGAGCTCGAGCGGGAAGAAGCGGCCGGATCGCAGAAGCAGCCCACAGATCAAGGTGAATGGGAGGAGGAGGATCCTGACCCTTGGCAAGATTACTACAAAAAATGTGGCATTTACCGTAGCAAAAAAGGTGTGCTCGATAAAATC
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| Protein seq | MTELAAGAVSSLLVVIRNEAVLLGGVRDDVQFIKEEMESMNSFLGHLARSAPQGGEHDEQVRTWMNQVRLLAQDCNNCIDLYLYSGNPEIHRAKGRLRRHLWWVYWSLRKMVAQHRAAIQLRQLKDRARDVGERRLRYGVEIPATTKAAAPDATGGYAAGDDEEEDEDDREGQFAVATPTLAHHSARWPVFEPPSLDDYVKAKLLEWIEGVPGNAIVTLSIAIVAPDADNKEVLAIAHETLVAPDYYYRRSIMVNVPAVHLDFLPLRPKEVLYYILRELEREEAAGSQKQPTDQGEWEEEDPDPWQDYYKKCGIYRSKKGVLDKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.383023 | 0.411186 | 0.561692 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0598300 | SBH | 0.425513 | 0.233692 | 0.247896 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37050 | RBH | 0.622069 | 0.334367 | 0.315426 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0579200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019280 | RBH | 0.000000 | 2.018046 | 1.183530 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019490 | SBH | 0.136746 | 0.000000 | 1.660113 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019230 | SBH | 0.723412 | 0.0 | 0.240298 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018890 | SBH | 3.044133 | 0.046047 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019300 | RBH | 4.767630 | 12.666516 | 14.847774 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0351000 | RBH | 2.700993 | 7.7502165 | 7.4830095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019790 | SBH | 0.000000 | 0.091162 | 0.194367 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0364300 | SBH | 2.353536 | 0.4016975 | 0.8838775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0019520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019710 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019210 | RBH | 2.210307 | 18.092388 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018960 | RBH | 0.294761 | 0.0 | 0.933381 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019080 | SBH | 0.521957 | 0.356360 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019180 | SBH | 0.0 | 0.0 | 0.060664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019540 | SBH | 0.0 | 10.388853 | 0.0 |
