Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0334700 | OGI:11063210 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:25116771-25117508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGATGCACCTGCGTGAGGACAGCGGCAAAGGACATCCCGAGAGGAAGCGCGAGATCACCCGGCAGCTGGCGCTAGTGGAGCGGGAGGCGACACCCAACCACACGCTGCGGCGGGTCATCCAGGCAGGGTGCACCACGCACGCCTTCGAGCGGTTCCCCACCCCGTGTGCGCCCGTCGACTCCTGCCGCGTCGCCGCGCTCGTTGATGAGGGGACAACGATGCTCGGCGGCGGTGGCAGGCAGTGGCAGCTCACCGCGCTCCGGGAGATCAAGGCCATCACCACCGAGAGCGACCGCAACAAGCGCTGCGTCGAGGCCACTCCCAGTGCCGTCGAGTTCCTCGTCTCCGTCGTCGTCCAAAGCCACGCCGCCGCCTCCACCTACATGTCGGCCAGGTCGGACGATGACCTGCTCGACTCGGTGATCGATTCCCCCATCTCGACGAGCTCGCCGGAGGAGGAGGCCCTGGGCGTGCTCTACTCCCTCAAGCCGTCCGAGCCCACCCTGCGCCGTATCCTCGGCAAGGACAATGGTGGCTTCCTCGACACCCTCGCCTCCGTCCTCCTACTGAAGGCGATGACATCAGCGATGCCGCCGGAGCGGCTAGGCTGTCACCCCAGCCGTCGCAGCATCCGGAGCCGGACCCCCTTACGCTGTCGATGGCGAGCGTTCCTCGAAGAAGCAGGTGAGACGGACGACAAGGCATCCACGGCCGTAGCCGCTGCCGGCGAGGAGTAG
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| CDS seq | ATGATGCACCTGCGTGAGGACAGCGGCAAAGGACATCCCGAGAGGAAGCGCGAGATCACCCGGCAGCTGGCGCTAGTGGAGCGGGAGGCGACACCCAACCACACGCTGCGGCGGGTCATCCAGGCAGGGTGCACCACGCACGCCTTCGAGCGGTTCCCCACCCCGTGTGCGCCCGTCGACTCCTGCCGCGTCGCCGCGCTCGTTGATGAGGGGACAACGATGCTCGGCGGCGGTGGCAGGCAGTGGCAGCTCACCGCGCTCCGGGAGATCAAGGCCATCACCACCGAGAGCGACCGCAACAAGCGCTGCGTCGAGGCCACTCCCAGTGCCGTCGAGTTCCTCGTCTCCGTCGTCGTCCAAAGCCACGCCGCCGCCTCCACCTACATGTCGGCCAGGTCGGACGATGACCTGCTCGACTCGGTGATCGATTCCCCCATCTCGACGAGCTCGCCGGAGGAGGAGGCCCTGGGCGTGCTCTACTCCCTCAAGCCGTCCGAGCCCACCCTGCGCCGTATCCTCGGCAAGGACAATGGTGGCTTCCTCGACACCCTCGCCTCCGTCCTCCTACTGAAGGCGATGACATCAGCGATGCCGCCGGAGCGGCTAGGCTGTCACCCCAGCCGTCGCAGCATCCGGAGCCGGACCCCCTTACGCTGTCGATGGCGAGCGTTCCTCGAAGAAGCAGGTGAGACGGACGACAAGGCATCCACGGCCGTAGCCGCTGCCGGCGAGGAGTAG
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| Protein seq | MMHLREDSGKGHPERKREITRQLALVEREATPNHTLRRVIQAGCTTHAFERFPTPCAPVDSCRVAALVDEGTTMLGGGGRQWQLTALREIKAITTESDRNKRCVEATPSAVEFLVSVVVQSHAAASTYMSARSDDDLLDSVIDSPISTSSPEEEALGVLYSLKPSEPTLRRILGKDNGGFLDTLASVLLLKAMTSAMPPERLGCHPSRRSIRSRTPLRCRWRAFLEEAGETDDKASTAVAAAGEE |
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| Function | E3 ubiquitin-protein ligase PUB22 [UniProtKB/Swiss-Prot:Q9SVC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0334700 | OsMH63_11T0334700.1 | Chr11 | 25116771 | 25117508 | + | maker | ||
| CDS seq | ATGATGCACCTGCGTGAGGACAGCGGCAAAGGACATCCCGAGAGGAAGCGCGAGATCACCCGGCAGCTGGCGCTAGTGGAGCGGGAGGCGACACCCAACCACACGCTGCGGCGGGTCATCCAGGCAGGGTGCACCACGCACGCCTTCGAGCGGTTCCCCACCCCGTGTGCGCCCGTCGACTCCTGCCGCGTCGCCGCGCTCGTTGATGAGGGGACAACGATGCTCGGCGGCGGTGGCAGGCAGTGGCAGCTCACCGCGCTCCGGGAGATCAAGGCCATCACCACCGAGAGCGACCGCAACAAGCGCTGCGTCGAGGCCACTCCCAGTGCCGTCGAGTTCCTCGTCTCCGTCGTCGTCCAAAGCCACGCCGCCGCCTCCACCTACATGTCGGCCAGGTCGGACGATGACCTGCTCGACTCGGTGATCGATTCCCCCATCTCGACGAGCTCGCCGGAGGAGGAGGCCCTGGGCGTGCTCTACTCCCTCAAGCCGTCCGAGCCCACCCTGCGCCGTATCCTCGGCAAGGACAATGGTGGCTTCCTCGACACCCTCGCCTCCGTCCTCCTACTGAAGGCGATGACATCAGCGATGCCGCCGGAGCGGCTAGGCTGTCACCCCAGCCGTCGCAGCATCCGGAGCCGGACCCCCTTACGCTGTCGATGGCGAGCGTTCCTCGAAGAAGCAGGTGAGACGGACGACAAGGCATCCACGGCCGTAGCCGCTGCCGGCGAGGAGTAG
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| Protein seq | MMHLREDSGKGHPERKREITRQLALVEREATPNHTLRRVIQAGCTTHAFERFPTPCAPVDSCRVAALVDEGTTMLGGGGRQWQLTALREIKAITTESDRNKRCVEATPSAVEFLVSVVVQSHAAASTYMSARSDDDLLDSVIDSPISTSSPEEEALGVLYSLKPSEPTLRRILGKDNGGFLDTLASVLLLKAMTSAMPPERLGCHPSRRSIRSRTPLRCRWRAFLEEAGETDDKASTAVAAAGEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0183450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g36490 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0183450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005690 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0018560 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0074000 | RBH | 0.0214355 | 0.038352 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0005580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0018510 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005670 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018240 | RBH | 0.0 | 0.0 | 0.0 |
