Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_11G0008600 | OGI:11001660 | 10/16 | Minghui 63 | MH63RS3 | HZAU | Chr11:489235-491508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGAGTTTCCTGAAACACAAGCCACACTGGGCAAACTGAAATAATGAGATATAATTGCATTAGAGATTCACTATTTCCAAGGTGCAATTGCAGCTGGGAACGGATTACAAATATACAATCCCTTCAAAATCCTGTGGCATCTTTATGCCAGCAGTATGCCTATGTACACCCAAACTCCAAAGAATGAACTTCCTCTCGATCACAACCAACAAAAAGAAATGGAGAAAGATGAGAGAATTCAGTCATCTAGCTAAGTAGCTATTGAATCTGTAGCCTTTTGTATGCATTTTCTGTGCCTCACTAACGAATGAATCCCCTGGTGTAGAGAAGAATGAGCAAAGAAACCAAAGTGACAACATTTATCAGTCTCTTCACCTTCTCCACCGTCCAGCTTCCATCCGACAAACTGGCCGGTATCTCATCATCATCCACAATCACCACCGATTCCGGAAGAGGCGAACCCATGATCTTCTCATCATGAACTGCACTGCATTCTTCTTCAGATTTATCACCTTCAACGACGACTTGCTCCACCACAACCTGTACAGCCGGTGGAACCATCTCCTCATGAACAATCACCACATGATCATTTGATCCCTCTGATGCTGCCATGATCATCGTGTCCGGTGGTTCATGGAATTGGACATGGTGTGACGCCAGCAACGGTAGCCTCTTCTCGTCTTCAACGTCATCGACAACAGGAAGCTTCTTGTAGAACGTCTCGCAATCGATGTGGTAGAGGCTCGCCGTGCGCACCTCCTGCGCCAGCGCACACGGCCAGCAGAAGAGCCACCGGGCGTAGTCCGTCACCGACGGCGAGCCGCAGCACGCCGTGCTCGCCGGAAGCCCGAAGCGTTCTCTCATCTGGATCCTCCAGTAGCCGCCGTAGAGCAGGCCGCACACGCAGAGCAGGGCCCCGGCGCCGCCGACCATGTCGCCGATGACCACGTCGTGGATGTGGAGCGCCGACACGCCCATCACCCACAGCGGCGCGAAGCACAGAAGCACGAACGTGGCGGTGTGCACGAACATGCTGCCGAATCCGAGCCGCTCCATGTTCCACCCGAAGGCGCAGAAGGTGCACGACAGGGAGAGCCACCACGCCGTCGCGTCGCCGCCGCAGTCGAACATGCCGCCGGCCCACTCCGGCTCGACCACGGCGTGTCCCGTGCATTTGTGTTGGCTCACCGAGTCGAAGGCGTTGGGGCACGCGAGCTCGCCGTAGTTGTCTTTTCCGAGCGGGCTGCACACGGTGTACACGACGGCGACGACCGGCGCGACGACGCCGAGCACGAAGAACCCATTCTCCACGAGCTCCGGCCGCGTCTTCTTGGTGTACCCCCAGTACAGGCCGCAGAGCACGTACTGGCAGGCGACGGTGAGGTGGAGCAGCGCGACCACGACGGCCATGTGGGCGCGCTCGCCGTGGCGCGGGCCGGCGCCGTCCTTGAAGTAGGCGGCGCGGAGGTCGGCGGCGTCGGCGGGGCGCCAGCGGCAGAGCAGGAAGAGGTGGTGGCAGAGGACGGGGTGCTGGTAGAGGCTCATGAGCGTGAAGAGCGCGTTGAGAACCTGGTTATTGATCTCGATCCAGTGGTTCCTCGCCGCCGGCGTGGGGAACGCCCCGTCGAGCAGGCCGAGGAGGAGCAGGACGAGCATGGCGCCGGAGACGGCGACGCAGAGAAGCCAGAGGAGCATGGCGATGTTCATGGGGTTGGTGATCCAGTCCTTGGTCGCCGAACGCACAGAGCTCCAGTTGATGGCGATTCCGGCGGAGAGGTGGTCGTCGGCGGCATTGCGGCGCCACGGTTTGAGCTGCCTGAGCCAGTGCGCGCGCTGTGGCTTGTCGAGGAGGAGGGGCTCGGCGAGCGGTGGCGCAGGCTGGGCGCGGTAGTTGCTGAGCATCGGGGCGTTGCCATTCTCTGCGGTTTGTGCATCGTCGTCACAATCACAAGCAAGAAGCATTGCAAAATTGCAATTCGCAAAGCCCCCTTCTCGTCCACCTGCATTTCAGGAGAAAAAGAAAACAGATGAAATTTCAGGAAAAATCTACAATGGACACAAGAATCTGGACATGGGAAAAGAAAAGAGGGGATTTTGTCGAAAAGCAGCAAGGAAGAAGGGGAGGAGAGAGTTTGGAGAGCTAAGTCTTACCAGAAAGGAGACAAGGCTGCAACTTGCAACTTTCTGTTTGATCCACTCTTATTGGATCCACAACTGAATATAATTTGTTTTTCAGTTGAAAAGAGGGGTTCTTGTACAAGCAAGCAAAGCAAT
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| CDS seq | ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGCGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG
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| Protein seq | MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTASLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0008600 | OsMH63_11T0008600.1 | Chr11 | 489235 | 491480 | - | maker | ||
| CDS seq | ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGCGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG
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| Protein seq | MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTASLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_11G0008600 | OsMH63_11T0008600.2 | Chr11 | 489235 | 491508 | - | maker | ||
| CDS seq | ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGCGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG
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| Protein seq | MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTASLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.73095 | 1.8145215 | 0.182757 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0109700 | RBH | 0.0 | 0.0 | 0.318250 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01850 | RBH | 0.0 | 0.0 | 0.073992 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0109700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000670 | RBH | 0.0 | 0.000000 | 0.184960 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000700 | SBH | 0.0 | 0.213842 | 0.158680 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000680 | SBH | 0.000000 | 1.286606 | 0.526188 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000690 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000690 | SBH | 0.000000 | 0.000000 | 1.284173 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0008500 | SBH | 0.2721805 | 0.231553 | 0.1323425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000680 | SBH | 0.019240 | 0.061294 | 0.022284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0009900 | RBH | 0.7617615 | 0.2328915 | 0.993216 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000560 | RBH | 0.016473 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000690 | RBH | 0.0 | 1.255573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000700 | RBH | 0.000000 | 0.0 | 0.042941 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000710 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000690 | SBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000660 | RBH | 0.151824 | 0.0 | 0.0 |
