Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
Os11g0109700		OGI:11001660 \| 10/16			Nipponbare \| IRGSP 1.0 \| RAP-db			Chr11:451635-453816		Homologues MicroCollinearity RGI-JBrowse RAP-DB Ricevarmap2
Gene Symbol		-
DNA seq		GAAATAATGAGATATAATTGCATTAGAGATTCACTATTTCCAAGGTGCAATTGCAGCTGGGAACGGATTACAAATATACAATCCCTTCAAAATCCTGTGGCATCTTTATGCCAGCAGTATGCCTATGTACACCCAAACTCCAAAGAATGAACTTCCTCTCGATCACAACCAACAAAAAGAAATGGAGAAAGATGAGAGAATTCAGTCATCTAGCTAAGTAGCTATTGAATCTGTAGCCTTTTGTATGCATTTTCTGTGCCTCACTAACGAATGAATCCCCTGGTGTAGAGAAGAATGAGCAAAGAAACCAAAGTGACAACATTTATCAGTCTCTTCACCTTCTCCACCGTCCAGCTTCCATCCGACAAACTGGCCGGTATCTCATCATCATCCACAATCACCACCGATTCCGGAAGAGGCGAACCCATGATCTTCTCATCATGAACTGCACTGCATTCTTCTTCAGATTTATCACCTTCAACGACGACTTGCTCCACCACAACCTGTACAGCCGGTGGAACCATCTCCTCATGAACAATCACCACATGATCATTTGATCCCTCTGATGCTGCCATGATCATCGTGTCCGGTGGTTCATGGAATTGGACATGGTGTGACGCCAGCAACGGTAGCCTCTTCTCGTCTTCAACGTCATCGACAACAGGAAGCTTCTTGTAGAACGTCTCGCAATCGATGTGGTAGAGGCTCTCCGTGCGCACCTCCTGCGCCAGCGCACACGGCCAGCAGAAGAGCCACCGGGCGTAGTCCGTCACCGACGGCGAGCCGCAGCACGCCGTGCTCGCCGGAAGCCCGAAGCGTTCTCTCATCTGGATCCTCCAGTAGCCGCCGTAGAGCAGGCCGCACACGCAGAGCAGGGCCCCGGCGCCGCCGACCATGTCGCCGATGACCACGTCGTGGATGTGGAGCGCCGACACGCCCATCACCCACAGCGGCGCGAAGCACAGAAGCACGAACGTGGCGGTGTGCACGAACATGCTGCCGAATCCGAGCCGCTCCATGTTCCACCCGAAGGCGCAGAAGGTGCACGACAGGGAGAGCCACCACGCCGTCGCGTCGCCGCCGCAGTCGAACATGCCGCCGGCCCACTCCGGCTCGACCACGGCGTGTCCCGTGCATTTGTGTTGGCTCACCGAGTCGAAGGCGTTGGGGCACGCGAGCTCGCCGTAGTTGTCTTTTCCGAGCGGGCTGCACACGGTGTACACGACGGCGACGACCGGCGCGACGACGCCGAGCACGAAGAACCCATTCTCCACGAGCTCCGGCCGCGTCTTCTTGGTGTACCCCCAGTACAGGCCGCAGAGCACGTACTGGCAGGCGACGGTGAGGTGGAGCAGCGCGACCACGACGGCCATGTGGGCGCGCTCGCCGTGGCGCGGGCCGGCGCCGTCCTTGAAGTAGGCGGCGCGGAGGTCGGCGGCGTCGGCGGGGCGCCAGCGGCAGAGCAGGAAGAGGTGGTGGCAGAGGACGGGGTGCTGGTAGAGGCTCATGAGCGTGAAGAGCGCGTTGAGAACCTGGTTATTGATCTCGATCCAGTGGTTCCTCGCCGCCGGCGTGGGGAACGCCCCGTCGAGCAGGCCGAGGAGGAGCAGGACGAGCATGGCGCCGGAGACGGCGACGCAGAGAAGCCAGAGGAGCATGGCGATGTTCATGGGGTTGGTGATCCAGTCCTTGGTCGCCGAACGCACAGAGCTCCAGTTGATGGCGATTCCGGCGGAGAGGTGGTCGTCGGCGGCATTGCGGCGCCACGGTTTGAGCTGCCTGAGCCAGTGCGCGCGCTGTGGCTTGTCGAGGAGGAGGGGCTCGGCGAGCGGTGGCGCAGGCTGGGCGCGGTAGTTGCTGAGCATCGGGGCGTTGCCATTCTCTGCGGTTTGTGCATCGTCGTCACAATCACAAGCAAGAAGCATTGCAAAATTGCAATTCGCAAAGCCCCCTTCTCGTCCACCTGCATTTCAGGAGAAAAAGAAAACAGATGAAATTTCAGGAAAAATCTACAATGGACACAAGAATCTGGACATGGGAAAAGAAAAGAGGGGATTTTGTCGAAAAGCAGCAAGGAAGAAGGGGAGGAGAGAGTTTGGAGAGCTAAGTCTTACCAGAAAGGAGACAAGGCTGCAACTTGCAACTTTCTGTTTGATCCACTCTTATTGGATCCACAACTGAA More
CDS seq		ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGAGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG More
Protein seq		MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTESLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR
Function		-

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os11g0109700	Os11t0109700-01	Chr11	451777	453816	-	irgsp1_rep
CDS seq	ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGAGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG More
Protein seq	MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTESLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os11g0109700	Os11t0109700-02	Chr11	451643	453709	-	irgsp1_rep
CDS seq	ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGAGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG More
Protein seq	MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTESLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os11g0109700	Os11t0109700-03	Chr11	451635	453683	-	irgsp1_rep
CDS seq	ATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGAGAATGGCAACGCCCCGATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGAGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG More
Protein seq	MLLACDCDDDAQTAENGNAPMLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTESLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR More

Gene	Transcript	Chromosome	Start	End	Strand	Source
Os11g0109700	Os11t0109700-04	Chr11	451645	453519	-	irgsp1_rep
CDS seq	ATGCTCAGCAACTACCGCGCCCAGCCTGCGCCACCGCTCGCCGAGCCCCTCCTCCTCGACAAGCCACAGCGCGCGCACTGGCTCAGGCAGCTCAAACCGTGGCGCCGCAATGCCGCCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACCAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTTCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAACCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCTGGCGCCCCGCCGACGCCGCCGACCTCCGCGCCGCCTACTTCAAGGACGGCGCCGGCCCGCGCCACGGCGAGCGCGCCCACATGGCCGTCGTGGTCGCGCTGCTCCACCTCACCGTCGCCTGCCAGTACGTGCTCTGCGGCCTGTACTGGGGGTACACCAAGAAGACGCGGCCGGAGCTCGTGGAGAATGGGTTCTTCGTGCTCGGCGTCGTCGCGCCGGTCGTCGCCGTCGTGTACACCGTGTGCAGCCCGCTCGGAAAAGACAACTACGGCGAGCTCGCGTGCCCCAACGCCTTCGACTCGGTGAGCCAACACAAATGCACGGGACACGCCGTGGTCGAGCCGGAGTGGGCCGGCGGCATGTTCGACTGCGGCGGCGACGCGACGGCGTGGTGGCTCTCCCTGTCGTGCACCTTCTGCGCCTTCGGGTGGAACATGGAGCGGCTCGGATTCGGCAGCATGTTCGTGCACACCGCCACGTTCGTGCTTCTGTGCTTCGCGCCGCTGTGGGTGATGGGCGTGTCGGCGCTCCACATCCACGACGTGGTCATCGGCGACATGGTCGGCGGCGCCGGGGCCCTGCTCTGCGTGTGCGGCCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGCTTCGGGCTTCCGGCGAGCACGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGTGCGCTGGCGCAGGAGGTGCGCACGGAGAGCCTCTACCACATCGATTGCGAGACGTTCTACAAGAAGCTTCCTGTTGTCGATGACGTTGAAGACGAGAAGAGGCTACCGTTGCTGGCGTCACACCATGTCCAATTCCATGAACCACCGGACACGATGATCATGGCAGCATCAGAGGGATCAAATGATCATGTGGTGATTGTTCATGAGGAGATGGTTCCACCGGCTGTACAGGTTGTGGTGGAGCAAGTCGTCGTTGAAGGTGATAAATCTGAAGAAGAATGCAGTGCAGTTCATGATGAGAAGATCATGGGTTCGCCTCTTCCGGAATCGGTGGTGATTGTGGATGATGATGAGATACCGGCCAGTTTGTCGGATGGAAGCTGGACGGTGGAGAAGGTGAAGAGACTGATAAATGTTGTCACTTTGGTTTCTTTGCTCATTCTTCTCTACACCAGGGGATTCATTCGTTAG More
Protein seq	MLSNYRAQPAPPLAEPLLLDKPQRAHWLRQLKPWRRNAADDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRWRPADAADLRAAYFKDGAGPRHGERAHMAVVVALLHLTVACQYVLCGLYWGYTKKTRPELVENGFFVLGVVAPVVAVVYTVCSPLGKDNYGELACPNAFDSVSQHKCTGHAVVEPEWAGGMFDCGGDATAWWLSLSCTFCAFGWNMERLGFGSMFVHTATFVLLCFAPLWVMGVSALHIHDVVIGDMVGGAGALLCVCGLLYGGYWRIQMRERFGLPASTACCGSPSVTDYARWLFCWPCALAQEVRTESLYHIDCETFYKKLPVVDDVEDEKRLPLLASHHVQFHEPPDTMIMAASEGSNDHVVIVHEEMVPPAVQVVVEQVVVEGDKSEEECSAVHDEKIMGSPLPESVVIVDDDEIPASLSDGSWTVEKVKRLINVVTLVSLLILLYTRGFIR More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	None	None	None

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_11g0109700	RBH	0.0	0.0	0.318250
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os11g01850	RBH	0.0	0.0	0.073992
Nipponbare \| IRGSP 1.0 \| RAP-db	Os12g0109700	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_11g0000670	RBH	0.0	0.000000	0.184960
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_11g0000700	SBH	0.0	0.213842	0.158680
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0000680	RBH	0.000000	1.286606	0.526188
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_11g0000690	SBH	0.0	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_11g0000690	RBH	0.000000	0.000000	1.284173
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_11G0008600	RBH	0.73095	1.8145215	0.182757
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_11g0000680	RBH	0.019240	0.061294	0.022284
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_11G0009900	RBH	0.7617615	0.2328915	0.993216
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_11g0000560	RBH	0.016473	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_11g0000690	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_11g0000690	RBH	0.0	1.255573	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_11g0000700	RBH	0.000000	0.0	0.042941
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_11g0000710	SBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G000690	SBH	0.0	0.000000	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_11g0000660	SBH	0.151824	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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