Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os12g0109700 | OGI:12001370 | 2/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr12:524065-526185 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGGAAGTATAACTGCATTAGAGATTCACTATTTCCAAGCTGCAATTACAGCTCGGAATGGATTACAAATACGCAAGCCCTTCTTAATCATGTGGCATCTTTATGCCATCATGTATACCTATGTACACCCAAACTGCAAAGAATGAATTTCCTCTCGATCAGAACCAACAAAAAGTAATGGAGAAAGATGAGAGAATTCAGTCATCTAGCTATTGAATCTGTACCCTTTTTTTATGCATTTTCTGTGCCTCACTAACGAATGAATCCCCTGGTGTAGAGAAGAATGAGCAAAGAAACCAAAGTGACAACATTCATCAGTCTCTTCACCTTCTCCACCGTCCAGCTTCCATCAGACAAACTGGCCGGTATCTCAGCATCAACCACAATCACTGATTCCGGAAGAGGCAAACCCATGATCTTCTCATCATGAACTGCACTGCATTCTTCTTCAGATTTATCACCTTCAACGACGACTTGCTCAAACACAACCTGCACAGCCGGTGGAACCATCTCCTCATGAACAACCACGACATGATCACTTGATTCCTCTGATGTTGCCATGATCATCGTGTCCGGTGGTTCATGGAATTGGACATGGTGTGACGCTAGCAGCAATGGCTGCCTCTTCTCGGCATCAACAACAGGAAGCTTCTTGTAGAACGTCTCGCCATCGATGTGGTAGAGGCTCGCCGTGCGCACCTCCTGCGCCAGCGCGCACGGCCAGCAGAAGAGCCACCGGGCGTAGTCCGTCACCGACGGCGAGCCGCAGCACGCCGCGCTCGCCGGAAGCCCGAACCGTTCTCTCATCTGGATCCTCCAGTAGCCGCCGTAGAGCAGCCCGCACACGCAGAGCAGCGCGCCGGCGCCGCCAACCATGTCGCCGATGACCACGTCGTGGATGTGGAGCGCCGACACGCCCATCACCCACAGCGGCGCGAAGCACAGCAGCACGAACGTGGCGGTGTGCACGAACATGCTGCCGAACCCGAGCCGCTCCATGTTCCACCCGAAGACGCAGAAGGTGCACGAGAGGGAGAGCCACCACGCCGTCGCGTCGCCGCCGCAGTCGAACATGCCGCCGGCCCACTCCGGCTCGACCACGGCAGCGTGCCTCTTGGTCGGGTGTTGGGTCACCGAGCCGAAGGCGTCGTGGCACGCGAGCTCGCAGTATAAGTTGTCTTTGCCGAGCGGGCTGCACACGGTGTACACGACGGCGACGACCGGCGCGGCGACGCCGAGCACGAAGAACCCGTTCTCCACGAGCTCCGGCCGCGTCTTCTTGGTGTACCCCCAGTACAGGCTGCAGAGCACGTACTGGCAGACGACGGTGAGGTGGAGCAGCGCGACCACGACGGCCATGTGGGCGCGCTCGCCGTGGCGCGGGCCGGCTGCGTCCTTGCAGTAGGCGGCGCGGAGGTCGGCGGCGTCGGCGGGGCGCCAGCGGCAGAGCAGGAAGAGGTGGTGGCAGAGGACGGGGTGCTGGTAGAGGCTCATGAGCGTGAAGAGCGCGTTGAGAACCTGATTATTGATCTCGATCCAGTGGTTCCTCGCCGCCGGCGTGGGGAACGCCCCGTCGAGCAGGCCGAGGAGGAGCAGGACGAGCATGGCGCCGGAGACGGCGACGCAGAGCAGCCAGAGGAGCATGGCGATGTTCATGGGGTTGGTGATCCAGTCCTTAGTCGCCGAACGCACAGAGCTCCAGTTGATGGCGATTCCGGCGGAGAGGTGGTCGTCGCCGTGGGCATGGCGGCGCCATGGTTTGAGCTGGCTGAGCCAGTGCGGCTTGTCGAGGAGGTGGTCGGCGAGCGGCGGTGCGCGGTAGCTGCTGAGCATCGGGGCGTCGCCATTAATTGTGTCTGCGGTTTGTGCATCGTCGTCACAATCACAAGCAAGAAGCATTGCAAATTTGCAATTCGTAAAGGCCCCTCTGAGCCCTCTCCTCCACCTGCATTGCAGGAGGAAAAGAAAAACAGATGAAAATTTCAGCAAAATTCTACGATGAACACAAGAACGGAAGAACCTAGACTAGATATTGGAAAAGAAAGAGGGGATTTTCTTCATCATGGGAACACGAACACCAGCAAGGAAGGAAGGAAGAAGGGGAGAAACTGGAGAGCGAA
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| CDS seq | TCTAGGTTCTTCCGTTCTTGTGTTCATCGTAGAATTTTGCTGAAATTTTCATCTGTTTTTCTTTTCCTCCTGCAATGCAGGTGGAGGAGAGGGCTCAGAGGGGCCTTTACGAATTGCAAATTTGCAATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGACACAATTAATGGCGACGCCCCGATGCTCAGCAGCTACCGCGCACCGCCGCTCGCCGACCACCTCCTCGACAAGCCGCACTGGCTCAGCCAGCTCAAACCATGGCGCCGCCATGCCCACGGCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACTAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTGCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAATCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCCGGCGCGCTGCTCTGCGTGTGCGGGCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGGTTCGGGCTTCCGGCGAGCGCGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGCGCGCTGGCGCAGGAGGTGCGCACGGCGAGCCTCTACCACATCGATGGCGAGACGTTCTACAAGAAGCTTCCTGTTGTTGA
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| Protein seq | SRFFRSCVHRRILLKFSSVFLFLLQCRWRRGLRGAFTNCKFAMLLACDCDDDAQTADTINGDAPMLSSYRAPPLADHLLDKPHWLSQLKPWRRHAHGDDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRRRAALRVRAALRRLLEDPDERTVRASGERGVLRLAVGDGLRPVALLLAVRAGAGGAHGEPLPHRWRDVLQEASCC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os12g0109700 | Os12t0109700-01 | Chr12 | 524065 | 526185 | - | irgsp1_rep | ||
| CDS seq | TCTAGGTTCTTCCGTTCTTGTGTTCATCGTAGAATTTTGCTGAAATTTTCATCTGTTTTTCTTTTCCTCCTGCAATGCAGGTGGAGGAGAGGGCTCAGAGGGGCCTTTACGAATTGCAAATTTGCAATGCTTCTTGCTTGTGATTGTGACGACGATGCACAAACCGCAGACACAATTAATGGCGACGCCCCGATGCTCAGCAGCTACCGCGCACCGCCGCTCGCCGACCACCTCCTCGACAAGCCGCACTGGCTCAGCCAGCTCAAACCATGGCGCCGCCATGCCCACGGCGACGACCACCTCTCCGCCGGAATCGCCATCAACTGGAGCTCTGTGCGTTCGGCGACTAAGGACTGGATCACCAACCCCATGAACATCGCCATGCTCCTCTGGCTGCTCTGCGTCGCCGTCTCCGGCGCCATGCTCGTCCTGCTCCTCCTCGGCCTGCTCGACGGGGCGTTCCCCACGCCGGCGGCGAGGAACCACTGGATCGAGATCAATAATCAGGTTCTCAACGCGCTCTTCACGCTCATGAGCCTCTACCAGCACCCCGTCCTCTGCCACCACCTCTTCCTGCTCTGCCGCCGGCGCGCTGCTCTGCGTGTGCGGGCTGCTCTACGGCGGCTACTGGAGGATCCAGATGAGAGAACGGTTCGGGCTTCCGGCGAGCGCGGCGTGCTGCGGCTCGCCGTCGGTGACGGACTACGCCCGGTGGCTCTTCTGCTGGCCGTGCGCGCTGGCGCAGGAGGTGCGCACGGCGAGCCTCTACCACATCGATGGCGAGACGTTCTACAAGAAGCTTCCTGTTGTTGA
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| Protein seq | SRFFRSCVHRRILLKFSSVFLFLLQCRWRRGLRGAFTNCKFAMLLACDCDDDAQTADTINGDAPMLSSYRAPPLADHLLDKPHWLSQLKPWRRHAHGDDHLSAGIAINWSSVRSATKDWITNPMNIAMLLWLLCVAVSGAMLVLLLLGLLDGAFPTPAARNHWIEINNQVLNALFTLMSLYQHPVLCHHLFLLCRRRAALRVRAALRRLLEDPDERTVRASGERGVLRLAVGDGLRPVALLLAVRAGAGGAHGEPLPHRWRDVLQEASCC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0109700 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01900 | SBH | 0.000000 | 0.000000 | 0.025467 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0109700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000580 | SBH | 0.0 | 0.0 | 1.446550 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000770 | SBH | 0.0 | 0.0 | 0.079896 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000740 | SBH | 0.0 | 0.0 | 1.142693 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000600 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000690 | SBH | 0.000000 | 0.000000 | 1.284173 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0008600 | SBH | 0.73095 | 1.8145215 | 0.182757 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000680 | SBH | 0.019240 | 0.061294 | 0.022284 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0008700 | RBH | 0.2168345 | 0.215669 | 0.2947765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000600 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000690 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000690 | SBH | 0.0 | 1.255573 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000710 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000710 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000610 | SBH | 0.0 | 0.0 | 0.460238 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000770 | SBH | 0.0 | 0.0 | 0.475596 |
