Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0375200 | OGI:10068630 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr10:24945640-24948887 | ||||||||
| Gene Symbol | OsNMD3, NMD3 | ||||||||||
| DNA seq | TCATCCCACCATATCAGCATGTTGGTTGCCTTCCCCACCTTCATCCTCCTCCTCATCATCACCAAGACTTAGGTCCTCAATTAGTTCCTCAATCGGCACAGTGGGAACATCATCACCAATAGTAGATGCCATCTCCGACCTGTAGTCCTCATCCTTGTATAGATCAATCTGGAATCTAATATCAGAGTTGTGCTCCAAGTCCCTGAGAAACTCCTCATACTCATCAGCCCTCTTCTCTAGCTCCCCCTTGGCCTTATTTACAGCATCTTCCTCCATTGGAAGCCTCTTCAGCTTCCATCGGCGTGTGCGTGGCCTCTTGGCAAAGCTCTTCTTAACAAGAATGACTTCAGGCAGACTGTGGCGCATCATAGCTGTGTCCATGTCATCATCATTCAAGTTGGCACCATAAAGATCATACCCAAGGGCAAGGTCTCCAGGATTCAGCAGGTGGCCAAGATGAGTCCGCACGGTGAACATGGTGTCGTTTTTCCCAAAGTCGGAGACCCGGGCGACCTGGGCATAAGCCAACTGGTAGCGAGATCCGTCAATGGTAATCTCTGGTGACTCGTGCTCGATGTCTAGCACGATGTACTCGACGAGCTGCTTGCTGGTGAGAGCAGCCTTGAAGTTGTAGACCCTGTACTTCTTTTCCTCGAGGTGGTGCACACGCAGGGTGAGGGGGTCAAGCAGAGCGATGGCATTGGTGACCTTGATGCAGAGGACGATAGGTCCAAGGCCTCCAAGATCGCGGGACACCTGAGGGCTAAGGGCGATGAGGTCCTCCCGGCAGATGGGGCAGATCTCGACGGAGAAGGTGTGCTTGTAGTTGTAGACGTTGCTCTTGGTGTCGTGGGAGACGAGCTGCTTGGCGGTCTGGGTCTGGACGGGGGCGACGGTGGCGAGGAAGTCGACGAGGCGGGCGGCGTGCGAGCGGGAGCCGAAGAAGAAGTCGAGGCCGCCGGGGGCGGCGGCGACGCGGAGGGCGAGGGAGGCCTGGCCGTGCTTGAGGAGGAGCTGCTCGAGGTAGAGGAAGGTGCGGCGGTGCGGGACGTGCTGGCGGAGCTGGACGACGGCGACCCACTGGTCGGGGTTGGACTGGGCGCGGGCGCAGGCATCGCAGAGGCGGTCGTGGACGGTGAACTCGACGGGGTGGGTCTGCTCGAGGACGACGGCGTTGAAGACCTCGCGGCGGAGGCGGAGCTTGAGGCGGAGGCGCTTGGAGTGGGGCTCGGAGAAGACGAACTCGGCGGCGGAGAGGGAGACGCGGAGGCGGGCGAGGGGGCGGTTGAGGCGGCGGAGGAGGATCTGCATGAGCTCGGGGGACTCCGGGCCGGCGCGGAGCCAGGAGCGCGGCGGCTGGAGGTAGGAGGTGCAGTCGGGGCAGTAGACGACGGCGGCGTGGCGCGGGACGCCCTCGGTGATGTCGACGCGGGCGCGGATGCAGCGCGCGCACATGTTGGCCGGGTTGGGCTGCATCGCCACGCCGCAGATGCAGCACAGCACCGTGCCCACCGTCTGCGTCGGCACGAACATGCCGCTCCCAGCCGCCGGCGCCGCCGACCCCGGCAGCATCCTGTACCTCGCCGGATTGGATCGAATCGAGTGGATTGGGGGATCTCTGGGGGCGGGGGGGATGGAGATTTTTGGGCTTAGGGTTTTTGTAGGTGAAAAGAGACGGCGGCGGCGCGATCAGGCGGTGGAGGAGATAGATGGTGACGAACGCGATTACGGGAGGGACTTGTTTGGGCCAACCACAACCACGCACTGCAATTTGGGCTTTTGGGCCTTGTCCATTGTTTTTTTTTCGCAATAAGTCCACTTTGACTCCCTGAAAAGTGTAATTCATGACCCTAAACCGCAAAACGGATATCTCGACCCCTGAACTATTGAAACCGGTGCAATTTGACTCCCTTGATGGTTTTATAGAGCGGTTTTGCTGACGTGGCGCTGATGTAGCAGTATTGACCAGTCTATGGGGTTGACGTGGCGCTTAGGTGGCATTTGAATTAAAAACATGTACGCGGGACTCGTTAATCATTCACACACATAAAAAATTATGGGGCCCACTGGCATATAGGCCCCACATGTCATCTCTCTCTTTCTTCTTCCTCCCTTCTCTCTTTCTTTCTCTCTCTCCCCTTCGGCCGGCGGCGGGCATGGGCCAGAGTGGTGGCGGCGGGCGGCGGCGGGAGCTGACACAGGAGCTAGCTGGAGTGGCGGTCCCCGGAGTGGAGGAGTCGACGATGGCGAGGCAGCACTCGGCGAGATAGGGTCGGCATCGTGGAGGAAGTCGACCGGCGGGGGTTGTCTTTGGCGAACGACGACCGGCGCGCGCCGGCGGACCACGGCTTCGGCCTCCACCTCAGTGGTGGCCACCTCACGGCGCCGGGGACGGCGGCCACCTAGGAGAGAGCTCGCCGGAGCTCCTCCGCTACCGCCCAAATCTGACTGAGACCTGCCGTCACCGCCGAATTCTCTGATCTCAATCTCTACTCCCCTCAATTCTCTGATCCTCAAACCAAAAAAAAAAAAGTCTGAATCTCTACTGCTCACTATGCAGCACGAATGAGGAATACGTACAAGAATCAAGAATGGACGCATCGGCTAGTCAGAAAAGTGGAAAAAATTCATTGAAAAATTTGGTTAGGTCATGTGTACGGAGGACCCATTAGAGATAAACGAGAATACGGCTAAGCCATGCGAGAATGCGGCGGTGGAGTCCGAGTCTTGTAGAGAGTCCTCATGGTGTTCGAGTGTTCGTGAGGAGGGGATTGAATTCACAGCAAATGAAAGGGAAGGAGAAAACATTGATGATCACACTCCACAGCCAGATGATTTTCTTTTTTTTTTTAAAAAAAGTCAAGTTTTCCCAAAAGGAATAATTGCTGCACACCAAGAAGTGTGAGCGGCGGAATCGTTTCCCGAAAAGGAATCAAGTTTTCCCTTTCATTTGCTGCACACCCAAGAGGGACCTTAGAGGTTGGAGTGGTCGGGAATGGTGGTGCGGTGGTGGGCAGTGCCCTGAGGGTTGAGGTAGCGAAACCACGCGAGGTCGGCCGCACAACAGCGGCGACGGTTGTGGTTGAATTGCTGGGAATGGAGAAGAACGAGACGAAACCGCGGTAAGGCACGGCCATGGCAGTGCTCATCCAGTGGCACAAATGGCTGTGGTTGCCGCTTGCCGAATGGGGAGGGAGAGAGAGATAAGGGAGAGAAGGGAGGAGGATGAGGAAGGGATAGACTGACAT
More
|
||||||||||
| CDS seq | ATGTCAGTCTATCCCTTCCTCATCCTCCTCCCTTCTCTCCCTTATCTCTCTCTCCCTCCCCATTCGGCAAGCGGCAACCACAGCCATTTGTGCCACTGGATGAGCACTGCCATGGCCGTGCCTTACCGCGGTTTCGTCTCGTTCTTCTCCATTCCCAGCAATTCAACCACAACCGTCGCCGCTGTTGTGCGGCCGACCTCGCGTGGTTTCGCTACCTCAACCCTCAGGGCACTGCCCACCACCGCACCACCATTCCCGACCACTCCAACCTCTAAGGTCCCTCTTGGGATCAGAGAATTGAGGGGAGTAGAGATTGAGATCAGAGAATTCGGCGGTGACGGCAGGTCTCAGTCAGATTTGGGCGGTAGCGGAGGAGCTCCGGCGAGCTCTCTCCTAGGTGGCCGCCGTCCCCGGCGCCGTGAGGTGGCCACCACTGAGGTGGAGGCCGAAGCCGTGGTCCGCCGGCGCGCGCCGGTCGTCGTTCGCCAAAGACAACCCCCGCCGGTCGACTTCCTCCACGATGCCGACCCTATCTCGCCGAGTGCTGCCTCGCCATCGTCGACTCCTCCACTCCGGGGACCGCCACTCCAGCTAGCTCCTGTAGATCCCCCAATCCACTCGATTCGATCCAATCCGGCGAGGTACAGGATGCTGCCGGGGTCGGCGGCGCCGGCGGCTGGGAGCGGCATGTTCGTGCCGACGCAGACGGTGGGCACGGTGCTGTGCTGCATCTGCGGCGTGGCGATGCAGCCCAACCCGGCCAACATGTGCGCGCGCTGCATCCGCGCCCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCCGTCGTCTACTGCCCCGACTGCACCTCCTACCTCCAGCCGCCGCGCTCCTGGCTCCGCGCCGGCCCGGAGTCCCCCGAGCTCATGCAGATCCTCCTCCGCCGCCTCAACCGCCCCCTCGCCCGCCTCCGCGTCTCCCTCTCCGCCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGCCTCCGCCTCAAGCTCCGCCTCCGCCGCGAGGTCTTCAACGCCGTCGTCCTCGAGCAGACCCACCCCGTCGAGTTCACCGTCCACGACCGCCTCTGCGATGCCTGCGCCCGCGCCCAGTCCAACCCCGACCAGTGGGTCGCCGTCGTCCAGCTCCGCCAGCACGTCCCGCACCGCCGCACCTTCCTCTACCTCGAGCAGCTCCTCCTCAAGCACGGCCAGGCCTCCCTCGCCCTCCGCGTCGCCGCCGCCCCCGGCGGCCTCGACTTCTTCTTCGGCTCCCGCTCGCACGCCGCCCGCCTCGTCGACTTCCTCGCCACCGTCGCCCCCGTCCAGACCCAGACCGCCAAGCAGCTCGTCTCCCACGACACCAAGAGCAACGTCTACAACTACAAGCACACCTTCTCCGTCGAGATCTGCCCCATCTGCCGGGAGGACCTCATCGCCCTTAGCCCTCAGGTGTCCCGCGATCTTGGAGGCCTTGGACCTATCGTCCTCTGCATCAAGGTCACCAATGCCATCGCTCTGCTTGACCCCCTCACCCTGCGTGTGCACCACCTCGAGGAAAAGAAGTACAGGGTCTACAACTTCAAGGCTGCTCTCACCAGCAAGCAGCTCGTCGAGTACATCGTGCTAGACATCGAGCACGAGTCACCAGAGATTACCATTGACGGATCTCGCTACCAGTTGGCTTATGCCCAGGTCGCCCGGGTCTCCGACTTTGGGAAAAACGACACCATGTTCACCGTGCGGACTCATCTTGGCCACCTGCTGAATCCTGGAGACCTTGCCCTTGGGTATGATCTTTATGGTGCCAACTTGAATGATGATGACATGGACACAGCTATGATGCGCCACAGTCTGCCTGAAGTCATTCTTGTTAAGAAGAGCTTTGCCAAGAGGCCACGCACACGCCGATGGAAGCTGAAGAGGCTTCCAATGGAGGAAGATGCTGTAAATAAGGCCAAGGGGGAGCTAGAGAAGAGGGCTGATGAGTATGAGGAGTTTCTCAGGGACTTGGAGCACAACTCTGATATTAGATTCCAGATTGATCTATACAAGGATGAGGACTACAGGTCGGAGATGGCATCTACTATTGGTGATGATGTTCCCACTGTGCCGATTGAGGAACTAATTGAGGACCTAAGTCTTGGTGATGATGAGGAGGAGGATGAAGGTGGGGAAGGCAACCAACATGCTGATATGGTGGGATGA
More
|
||||||||||
| Protein seq | MSVYPFLILLPSLPYLSLPPHSASGNHSHLCHWMSTAMAVPYRGFVSFFSIPSNSTTTVAAVVRPTSRGFATSTLRALPTTAPPFPTTPTSKVPLGIRELRGVEIEIREFGGDGRSQSDLGGSGGAPASSLLGGRRPRRREVATTEVEAEAVVRRRAPVVVRQRQPPPVDFLHDADPISPSAASPSSTPPLRGPPLQLAPVDPPIHSIRSNPARYRMLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHADMVG |
||||||||||
| Function | 60S ribosomal export protein NMD3 [UniProtKB/Swiss-Prot:Q55BF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0375200 | OsMH63_10T0375200.1 | Chr10 | 24945640 | 24948887 | - | maker | ||
| CDS seq | ATGTCAGTCTATCCCTTCCTCATCCTCCTCCCTTCTCTCCCTTATCTCTCTCTCCCTCCCCATTCGGCAAGCGGCAACCACAGCCATTTGTGCCACTGGATGAGCACTGCCATGGCCGTGCCTTACCGCGGTTTCGTCTCGTTCTTCTCCATTCCCAGCAATTCAACCACAACCGTCGCCGCTGTTGTGCGGCCGACCTCGCGTGGTTTCGCTACCTCAACCCTCAGGGCACTGCCCACCACCGCACCACCATTCCCGACCACTCCAACCTCTAAGGTCCCTCTTGGGATCAGAGAATTGAGGGGAGTAGAGATTGAGATCAGAGAATTCGGCGGTGACGGCAGGTCTCAGTCAGATTTGGGCGGTAGCGGAGGAGCTCCGGCGAGCTCTCTCCTAGGTGGCCGCCGTCCCCGGCGCCGTGAGGTGGCCACCACTGAGGTGGAGGCCGAAGCCGTGGTCCGCCGGCGCGCGCCGGTCGTCGTTCGCCAAAGACAACCCCCGCCGGTCGACTTCCTCCACGATGCCGACCCTATCTCGCCGAGTGCTGCCTCGCCATCGTCGACTCCTCCACTCCGGGGACCGCCACTCCAGCTAGCTCCTGTAGATCCCCCAATCCACTCGATTCGATCCAATCCGGCGAGGTACAGGATGCTGCCGGGGTCGGCGGCGCCGGCGGCTGGGAGCGGCATGTTCGTGCCGACGCAGACGGTGGGCACGGTGCTGTGCTGCATCTGCGGCGTGGCGATGCAGCCCAACCCGGCCAACATGTGCGCGCGCTGCATCCGCGCCCGCGTCGACATCACCGAGGGCGTCCCGCGCCACGCCGCCGTCGTCTACTGCCCCGACTGCACCTCCTACCTCCAGCCGCCGCGCTCCTGGCTCCGCGCCGGCCCGGAGTCCCCCGAGCTCATGCAGATCCTCCTCCGCCGCCTCAACCGCCCCCTCGCCCGCCTCCGCGTCTCCCTCTCCGCCGCCGAGTTCGTCTTCTCCGAGCCCCACTCCAAGCGCCTCCGCCTCAAGCTCCGCCTCCGCCGCGAGGTCTTCAACGCCGTCGTCCTCGAGCAGACCCACCCCGTCGAGTTCACCGTCCACGACCGCCTCTGCGATGCCTGCGCCCGCGCCCAGTCCAACCCCGACCAGTGGGTCGCCGTCGTCCAGCTCCGCCAGCACGTCCCGCACCGCCGCACCTTCCTCTACCTCGAGCAGCTCCTCCTCAAGCACGGCCAGGCCTCCCTCGCCCTCCGCGTCGCCGCCGCCCCCGGCGGCCTCGACTTCTTCTTCGGCTCCCGCTCGCACGCCGCCCGCCTCGTCGACTTCCTCGCCACCGTCGCCCCCGTCCAGACCCAGACCGCCAAGCAGCTCGTCTCCCACGACACCAAGAGCAACGTCTACAACTACAAGCACACCTTCTCCGTCGAGATCTGCCCCATCTGCCGGGAGGACCTCATCGCCCTTAGCCCTCAGGTGTCCCGCGATCTTGGAGGCCTTGGACCTATCGTCCTCTGCATCAAGGTCACCAATGCCATCGCTCTGCTTGACCCCCTCACCCTGCGTGTGCACCACCTCGAGGAAAAGAAGTACAGGGTCTACAACTTCAAGGCTGCTCTCACCAGCAAGCAGCTCGTCGAGTACATCGTGCTAGACATCGAGCACGAGTCACCAGAGATTACCATTGACGGATCTCGCTACCAGTTGGCTTATGCCCAGGTCGCCCGGGTCTCCGACTTTGGGAAAAACGACACCATGTTCACCGTGCGGACTCATCTTGGCCACCTGCTGAATCCTGGAGACCTTGCCCTTGGGTATGATCTTTATGGTGCCAACTTGAATGATGATGACATGGACACAGCTATGATGCGCCACAGTCTGCCTGAAGTCATTCTTGTTAAGAAGAGCTTTGCCAAGAGGCCACGCACACGCCGATGGAAGCTGAAGAGGCTTCCAATGGAGGAAGATGCTGTAAATAAGGCCAAGGGGGAGCTAGAGAAGAGGGCTGATGAGTATGAGGAGTTTCTCAGGGACTTGGAGCACAACTCTGATATTAGATTCCAGATTGATCTATACAAGGATGAGGACTACAGGTCGGAGATGGCATCTACTATTGGTGATGATGTTCCCACTGTGCCGATTGAGGAACTAATTGAGGACCTAAGTCTTGGTGATGATGAGGAGGAGGATGAAGGTGGGGAAGGCAACCAACATGCTGATATGGTGGGATGA
More
|
|||||||
| Protein seq | MSVYPFLILLPSLPYLSLPPHSASGNHSHLCHWMSTAMAVPYRGFVSFFSIPSNSTTTVAAVVRPTSRGFATSTLRALPTTAPPFPTTPTSKVPLGIRELRGVEIEIREFGGDGRSQSDLGGSGGAPASSLLGGRRPRRREVATTEVEAEAVVRRRAPVVVRQRQPPPVDFLHDADPISPSAASPSSTPPLRGPPLQLAPVDPPIHSIRSNPARYRMLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHADMVG
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.010509 | 0.168833 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0573900 | RBH | 7.877435 | 7.800606 | 4.351871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g42320 | RBH | 4.247740 | 4.165338 | 0.943349 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0573900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0020890 | RBH | 1.085468 | 5.320188 | 4.162622 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0021030 | RBH | 0.658803 | 2.066806 | 4.222109 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0020660 | RBH | 2.738469 | 5.299150 | 6.790996 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0021220 | RBH | 0.516037 | 0.341751 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0020980 | RBH | 12.727090 | 21.087200 | 17.938028 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0375100 | RBH | 5.4116505 | 9.8306745 | 7.4321445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0020700 | RBH | 0.665093 | 1.338997 | 1.517448 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0401500 | SBH | 27.4730165 | 6.7664235 | 7.5086835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0020540 | RBH | 0.593514 | 0.133578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0020440 | RBH | 0.979794 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0021010 | RBH | 9.565866 | 13.909680 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0020520 | RBH | 1.278080 | 0.0 | 1.726086 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0021030 | SBH | 0.379044 | 10.020248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G020870 | RBH | 0.812684 | 5.228424 | 3.097281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0020910 | RBH | 2.668667 | 14.570814 | 6.993043 |
