Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0020520 | OGI:10068630 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:25029069-25031557 | ||||||||
| Gene Symbol | OsNMD3, NMD3, - | ||||||||||
| DNA seq | acgattataagtcattaggtttgagaacagcaccaccttgtgaaagtaatagaaaaaaagatccgtaaaattcttaacttattaaagttttaccaaaccagtactcatcgcttattagtggagcaccatctgttctgtccatcaactctacatatctaacctcttattgcacgatggaggcatagtctgaatgaagtgcctgataaaacagcagcagttgatttgcaatcactaaaaatgcacattattgtctcatcatggctcctgggtatgatattatactacacttatctttattagttttttaatcaatttattggagtgacactcaacatggcaaacgttttcaggtcatacctacaattctctagtcatgactcagcataaatccacaatcatattccacgcttgcaaaccacataatggggactaaaaacatatagtaaaaatatgaatctggcacaatctaaacaccaaactagatgttttggaaatcaaacaatgcatctattttaagatatgttgtgatcagccacactatggcaagaaaacaacatatcacagacaataagaatagagaaatataatttaagccaagctgcaacaccagatacaggataaggtgatataacatctatcatgagaaacagcaaaagtcgaaacaatttagcaacaaaacttataacttatagaagtaaaggggagaacaaaacttatacggattaaacagatgcagttcagacctatgatctgcggttggcagcaaccatcaccagaaggcagaagcacagcacaggtaaacatattaactcatcccaccatatcagcatgttggttgccttccccaccttcatcctcctcctcatcatcaccaagacttaggtcctcaattagttcctcaatcggcacagtgggaacatcatcaccaatagtagatgccatctccgacctgtagtcctcatccttgtatagatcaatctggaatctaatatcagagttgtgctccaagtccctgagaaactcctcatactcatcagccctcttctctagctcccccttggccttatttacagcatcttcctccattggaagcctcttcagcttccatcggcgtgtgcgtggcctcttggcaaagctcttcttaacaagaatgacttcaggcagactgtggcgcatcatagctgtgtccatgtcatcatcattcaagttggcaccataaagatcatacccaagggcaaggtctccaggattcagcaggtggccaagatgagtccgcacggtgaacatggtgtcgtttttcccaaagtcggagacccgggcgacctgggcataagccaactggtagcgagatccgtcaatggtaatctctggtgactcgtgctcgatgtctagcacgatgtactcgacgagctgcttgctggtgagagcagccttgaagttgtagaccctgtacttcttttcctcgaggtggtgcacacgcagggtgagggggtcaagcagagcgatggcattggtgaccttgatgcagaggacgataggtccaaggcctccaagatcgcgggacacctgagggctaagggcgatgaggtcctcccggcagatggggcagatctcgacggagaaggtgtgcttgtagttgtagacgttgctcttggtgtcgtgggagacgagctgcttggcggtctgggtctggacgggggcgacggtggcgaggaagtcgacgaggcgggcggcgtgcgagcgggagccgaagaagaagtcgaggccgccgggggcggcggcgacgcggagggcgagggaggcctggccgtgcttgaggaggagctgctcgaggtagaggaaggtgcggcggtgcgggacgtgctggcggagctggacgacggcgacccactggtcggggttggactgggcgcgggcgcaggcatcgcagaggcggtcgtggacggtgaactcgacggggtgggtctgctcgaggacgacggcgttgaagacctcgcggcggaggcggagcttgaggcggaggcgcttggagtggggctcggagaagacgaactcggcggcggagagggagacgcggaggcgggcgagggggcggttgaggcggcggaggaggatctgcatgagctcgggggactccgggccggcgcggagccaggagcgcggcggctggaggtaggaggtgcagtcggggcagtagacgacggcggcgtggcgcgggacgccctcggtgatgtcgacgcgggcgcggatgcagcgcgcgcacatgttggccgggttgggctgcatcgccacgccgcagatgcagcacagcaccgtgcccaccgtctgcgtcggcacgaacatgccgctcccagccgccggcgccgccgaccccggcagcatcctgtacctcgccggattggatcgaatcgagtggattgggggatctctgggggcgggggggatggagatttttgggcttagggtttttgtaggtgaaaagagacggc
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| CDS seq | atgctgccggggtcggcggcgccggcggctgggagcggcatgttcgtgccgacgcagacggtgggcacggtgctgtgctgcatctgcggcgtggcgatgcagcccaacccggccaacatgtgcgcgcgctgcatccgcgcccgcgtcgacatcaccgagggcgtcccgcgccacgccgccgtcgtctactgccccgactgcacctcctacctccagccgccgcgctcctggctccgcgccggcccggagtcccccgagctcatgcagatcctcctccgccgcctcaaccgccccctcgcccgcctccgcgtctccctctccgccgccgagttcgtcttctccgagccccactccaagcgcctccgcctcaagctccgcctccgccgcgaggtcttcaacgccgtcgtcctcgagcagacccaccccgtcgagttcaccgtccacgaccgcctctgcgatgcctgcgcccgcgcccagtccaaccccgaccagtgggtcgccgtcgtccagctccgccagcacgtcccgcaccgccgcaccttcctctacctcgagcagctcctcctcaagcacggccaggcctccctcgccctccgcgtcgccgccgcccccggcggcctcgacttcttcttcggctcccgctcgcacgccgcccgcctcgtcgacttcctcgccaccgtcgcccccgtccagacccagaccgccaagcagctcgtctcccacgacaccaagagcaacgtctacaactacaagcacaccttctccgtcgagatctgccccatctgccgggaggacctcatcgcccttagccctcaggtgtcccgcgatcttggaggccttggacctatcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtgtgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagcaagcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattgacggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaaacgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttgcccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatgatgcgccacagtctgcctgaagtcattcttgttaagaagagctttgccaagaggccacgcacacgccgatggaagctgaagaggcttccaatggaggaagatgctgtaaataaggccaagggggagctagagaagagggctgatgagtatgaggagtttctcagggacttggagcacaactctgatattagattccagattgatctatacaaggatgaggactacaggtcggagatggcatctactattggtgatgatgttcccactgtgccgattgaggaactaattgaggacctaagtcttggtgatgatgaggaggaggatgaaggtggggaaggcaaccaacatgctgatatggtgggatga
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| Protein seq | MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHADMVG |
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| Function | 60S ribosomal export protein NMD3 [UniProtKB/Swiss-Prot:Q55BF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0020520 | OsLiXu_10g0020520.01 | Chr10 | 25029069 | 25031557 | - | NAM | ||
| CDS seq | atgctgccggggtcggcggcgccggcggctgggagcggcatgttcgtgccgacgcagacggtgggcacggtgctgtgctgcatctgcggcgtggcgatgcagcccaacccggccaacatgtgcgcgcgctgcatccgcgcccgcgtcgacatcaccgagggcgtcccgcgccacgccgccgtcgtctactgccccgactgcacctcctacctccagccgccgcgctcctggctccgcgccggcccggagtcccccgagctcatgcagatcctcctccgccgcctcaaccgccccctcgcccgcctccgcgtctccctctccgccgccgagttcgtcttctccgagccccactccaagcgcctccgcctcaagctccgcctccgccgcgaggtcttcaacgccgtcgtcctcgagcagacccaccccgtcgagttcaccgtccacgaccgcctctgcgatgcctgcgcccgcgcccagtccaaccccgaccagtgggtcgccgtcgtccagctccgccagcacgtcccgcaccgccgcaccttcctctacctcgagcagctcctcctcaagcacggccaggcctccctcgccctccgcgtcgccgccgcccccggcggcctcgacttcttcttcggctcccgctcgcacgccgcccgcctcgtcgacttcctcgccaccgtcgcccccgtccagacccagaccgccaagcagctcgtctcccacgacaccaagagcaacgtctacaactacaagcacaccttctccgtcgagatctgccccatctgccgggaggacctcatcgcccttagccctcaggtgtcccgcgatcttggaggccttggacctatcgtcctctgcatcaaggtcaccaatgccatcgctctgcttgaccccctcaccctgcgtgtgcaccacctcgaggaaaagaagtacagggtctacaacttcaaggctgctctcaccagcaagcagctcgtcgagtacatcgtgctagacatcgagcacgagtcaccagagattaccattgacggatctcgctaccagttggcttatgcccaggtcgcccgggtctccgactttgggaaaaacgacaccatgttcaccgtgcggactcatcttggccacctgctgaatcctggagaccttgcccttgggtatgatctttatggtgccaacttgaatgatgatgacatggacacagctatgatgcgccacagtctgcctgaagtcattcttgttaagaagagctttgccaagaggccacgcacacgccgatggaagctgaagaggcttccaatggaggaagatgctgtaaataaggccaagggggagctagagaagagggctgatgagtatgaggagtttctcagggacttggagcacaactctgatattagattccagattgatctatacaaggatgaggactacaggtcggagatggcatctactattggtgatgatgttcccactgtgccgattgaggaactaattgaggacctaagtcttggtgatgatgaggaggaggatgaaggtggggaaggcaaccaacatgctgatatggtgggatga
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| Protein seq | MLPGSAAPAAGSGMFVPTQTVGTVLCCICGVAMQPNPANMCARCIRARVDITEGVPRHAAVVYCPDCTSYLQPPRSWLRAGPESPELMQILLRRLNRPLARLRVSLSAAEFVFSEPHSKRLRLKLRLRREVFNAVVLEQTHPVEFTVHDRLCDACARAQSNPDQWVAVVQLRQHVPHRRTFLYLEQLLLKHGQASLALRVAAAPGGLDFFFGSRSHAARLVDFLATVAPVQTQTAKQLVSHDTKSNVYNYKHTFSVEICPICREDLIALSPQVSRDLGGLGPIVLCIKVTNAIALLDPLTLRVHHLEEKKYRVYNFKAALTSKQLVEYIVLDIEHESPEITIDGSRYQLAYAQVARVSDFGKNDTMFTVRTHLGHLLNPGDLALGYDLYGANLNDDDMDTAMMRHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIEDLSLGDDEEEDEGGEGNQHADMVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.278080 | 0.0 | 1.726086 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0573900 | RBH | 7.877435 | 7.800606 | 4.351871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g42320 | RBH | 4.247740 | 4.165338 | 0.943349 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0573900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0020890 | RBH | 1.085468 | 5.320188 | 4.162622 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0021030 | RBH | 0.658803 | 2.066806 | 4.222109 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0020660 | RBH | 2.738469 | 5.299150 | 6.790996 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0021220 | RBH | 0.516037 | 0.341751 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0020980 | RBH | 12.727090 | 21.087200 | 17.938028 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0375200 | RBH | 0.010509 | 0.168833 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0020700 | RBH | 0.665093 | 1.338997 | 1.517448 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0401500 | RBH | 27.4730165 | 6.7664235 | 7.5086835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0020540 | RBH | 0.593514 | 0.133578 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0020440 | RBH | 0.979794 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0021010 | RBH | 9.565866 | 13.909680 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0021030 | RBH | 0.379044 | 10.020248 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G020870 | RBH | 0.812684 | 5.228424 | 3.097281 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0020910 | RBH | 2.668667 | 14.570814 | 6.993043 |
