Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_10G0223600 | OGI:01011440 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr10:14878428-14879398 | ||||||||
| Gene Symbol | DLN238, OsDLN238 | ||||||||||
| DNA seq | GTTCCTTTTATGTTGCTCTTGTCCATAGGATTTTCATGTAATGAAATGAGACAAATCTTTAAGTGTACTGAATGTTGAACAATTCATAGTCAATAGATAGCAATATAATATGCATAGTACAAGTAAATGTGAAAACATTTTTCTGCCTGGTTTGTGAACCAGCAGTATATAGTTCCTCACAATCATTTTAGTACATGGGCTATGTAATACATCAGTTTTTTTCCTTTTTCATGTTGATGCTTTTTTTCCATTCATCTTCATCACCCCTTTTTAGTCTTCTTATTTGTTGTATTCGCCTTATCTTGACAAGTTTGCTTCTTCCCTGCAAATGAAACATTGTTTATTTGGTCAGCCTTTTATACTGCTACCTTTTTTTTTGCAATTATTTGGATGCATTATTCAGTTTTTATAGCTAAATATGTGTACATTACTTTTGCCTGAGGAACTTGTTGCCTGTTCCCGTTCTGGTTTCTTCTTTGTTTCAATAGTCCCTGCAAAATGTTTAATTGTGTATGTATGAATTATATAATGCACTATAATTGCACAGATTCAAATATTAACCTCAAAAAAAATTTCTTACTTGTTCTTTTTGTTTGCTGTTGACTTTGCAACATGTGTGCAACTTGCATTAATGGACAGCTTTCAATTGTATGATTTGTCCTTCCACACCTTGTGCAATGCCTTTTTGGTACCTCTTTTAGCTTCTCCACTATTCCTTTTGTCCTGGCAGATTTTTTTCCTTTTGTGTTTGCTAAATCAGGGTCCTCAATTTCTTCTTCTTCTTCTTCTTCTTCATTAAGTGTTTCTTGATTCGCTTGCTGTCCAATTGCTTCTTCTATTGTACTGTTTCCATCATGCGGCAGATTTTGATCTCCCTCTTCAAGCAACAAGTCCAGATTTCCATCAAGCTTGTCCATTTGATCTAGCATGTAAAGGTATGTATCTTTTCTCTTTGAGGCTTTTGAAGCCAT
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| CDS seq | ATGGCTTCAAAAGCCTCAAAGAGAAAAGATACATACCTTTACATGCTAGATCAAATGGACAAGCTTGATGGAAATCTGGACTTGTTGCTTGAAGAGGGAGATCAAAATCTGCCGCATGATGGAAACAGTACAATAGAAGAAGCAATTGGACAGCAAGCGAATCAAGAAACACTTAATGAAGAAGAAGAAGAAGAAGAAGAAATTGAGGACCCTGATTTAGCAAACACAAAAGGAAAAAAATCTGCCAGGACAAAAGGAATAGTGGAGAAGCTAAAAGAGGTACCAAAAAGGCATTGCACAAGGTGTGGAAGGACAAATCATACAATTGAAAGCTGTCCATTAATGCAAGTTGCACACATGTTGCAAAGTCAACAGCAAACAAAAAGAACAAGGACTATTGAAACAAAGAAGAAACCAGAACGGGAACAGGCAACAAGTTCCTCAGGCAAAAGGAAGAAGCAAACTTGTCAAGATAAGGCGAATACAACAAATAAGAAGACTAAAAAGGGGTGA
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| Protein seq | MASKASKRKDTYLYMLDQMDKLDGNLDLLLEEGDQNLPHDGNSTIEEAIGQQANQETLNEEEEEEEEIEDPDLANTKGKKSARTKGIVEKLKEVPKRHCTRCGRTNHTIESCPLMQVAHMLQSQQQTKRTRTIETKKKPEREQATSSSGKRKKQTCQDKANTTNKKTKKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0223600 | OsMH63_10T0223600.1 | Chr10 | 14878428 | 14879398 | - | maker | ||
| CDS seq | ATGGCTTCAAAAGCCTCAAAGAGAAAAGATACATACCTTTACATGCTAGATCAAATGGACAAGCTTGATGGAAATCTGGACTTGTTGCTTGAAGAGGGAGATCAAAATCTGCCGCATGATGGAAACAGTACAATAGAAGAAGCAATTGGACAGCAAGCGAATCAAGAAACACTTAATGAAGAAGAAGAAGAAGAAGAAGAAATTGAGGACCCTGATTTAGCAAACACAAAAGGAAAAAAATCTGCCAGGACAAAAGGAATAGTGGAGAAGCTAAAAGAGGTACCAAAAAGGCATTGCACAAGGTGTGGAAGGACAAATCATACAATTGAAAGCTGTCCATTAATGCAAGTTGCACACATGTTGCAAAGTCAACAGCAAACAAAAAGAACAAGGACTATTGAAACAAAGAAGAAACCAGAACGGGAACAGGCAACAAGTTCCTCAGGCAAAAGGAAGAAGCAAACTTGTCAAGATAAGGCGAATACAACAAATAAGAAGACTAAAAAGGGGTGA
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| Protein seq | MASKASKRKDTYLYMLDQMDKLDGNLDLLLEEGDQNLPHDGNSTIEEAIGQQANQETLNEEEEEEEEIEDPDLANTKGKKSARTKGIVEKLKEVPKRHCTRCGRTNHTIESCPLMQVAHMLQSQQQTKRTRTIETKKKPEREQATSSSGKRKKQTCQDKANTTNKKTKKG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_10G0223600 | OsMH63_10T0223600.2 | Chr10 | 14878428 | 14879398 | - | maker | ||
| CDS seq | ATGGCTTCAAAAGCCTCAAAGAGAAAAGATACATACCTTTACATGCTAGATCAAATGGACAAGCTTGATGGAAATCTGGACTTGTTGCTTGAAGAGGGAGATCAAAATCTGCCGCATGATGGAAACAGTACAATAGAAGAAGCAATTGGACAGCAAGCGAATCAAGAAACACTTAATGAAGAAGAAGAAGAAGAAGAAGAAATTGAGGACCCTGATTTAGCAAACACAAAAGGAAAAAAATCTGCCAGGACAAAAGGAATAGTGGAGAAGCTAAAAGAGGTACCAAAAAGGCATTGCACAAGGTGTGGAAGGACAAATCATACAATTGAAAGCTGTCCATTAATGCAAGTTGCACACATGTTGCAAAGTCAACAGCAAACAAAAAGAACAAGGACTATTGAAACAAAGAAGAAACCAGAACGGGAACAGGCAACAAGTTCCTCAGGCAAAAGTAATGTACACATATTTAGCTATAAAAACTGA
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| Protein seq | MASKASKRKDTYLYMLDQMDKLDGNLDLLLEEGDQNLPHDGNSTIEEAIGQQANQETLNEEEEEEEEIEDPDLANTKGKKSARTKGIVEKLKEVPKRHCTRCGRTNHTIESCPLMQVAHMLQSQQQTKRTRTIETKKKPEREQATSSSGKSNVHIFSYKN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3135575 | 1.3640835 | 2.230872 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0009240 | RBH | 0.209964 | 9.611394 | 2.826511 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009150 | RBH | 0.000000 | 2.711771 | 3.710001 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0009300 | RBH | 0.000000 | 0.0 | 1.378307 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0009290 | RBH | 0.015134 | 0.208126 | 0.141777 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0321600 | SBH | 0.0060505 | 0.0055725 | 0.0039805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009080 | RBH | 0.123222 | 0.926089 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0014390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0009460 | RBH | 3.388001 | 50.553932 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009070 | RBH | 0.384196 | 0.0 | 0.297361 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0009570 | RBH | 0.108970 | 0.594118 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G009390 | RBH | 0.000000 | 0.000000 | 0.284200 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009360 | RBH | 0.0 | 1.435245 | 1.127660 |
