Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_10G0063900 OGI:10013280 | 3/16 Minghui 63 | MH63RS3 | HZAU Chr10:4456317-4458611
Gene Symbol -
DNA seq

ATGACCAAAGAGTTAATGATACCCCAACTAAAAGAACAATTGAGAGAAATGGTGGAACTTTTGTATGAAGGTAAACTGGACATGAGGAGATTAAACTATGGAGTCATAACTTTGATCCCCAAGGTTAAAGATGCTAATACTATCAAATCGTTTAGACCAATATGCCTCCTCAATGTGTGTTTCAAATTTCTCACCAAGATCCTAACAAGGAGGTTGTCTGAAATTGCTCAGAAGGTAATAGGGGAGAGTCAAACTGCCTTTATTCCAGGAAGGCAGAATCTGGATGGGGTGGTTATCCTACATGAAGTTTTACATGAACTAAAAAAAGAGAAGAAATCAGGTATCATCTTCAAGCTCGATTTTGAAAAGGCATACGACAAGGTGCAATGGAGTTTTTTGTTTGATGTTCTGCATAAGAAAGGTTTCAGTGATAGATGGATTCAGTGGGTTAAAATGGCAACCATAGGAGGGAAGATGGCAGTCAATATTAATGGGGAGGTGAAAGACTTCTTTAAGACTTATAGGGGAGTAAGACAGGGGGATCCACTTTCCCCTCTTTTATTCAACTTGGTTGCTGATGCTTTATCCGAAATGTTGAATAATGCTAAACAAGCAGTACCACATTTAGTTCCTGGTGGCTTGACACACTTACAATATGCTGATGATACCATACTTTTCATGACCAACACAGAGGAGAACATTGTTACTGTGAAATTTCTGCTATACTGCTATGAGGCTATGTCTGGTCTTAAGATTAACTACCAAAAGAGTGAGATCATGGTCATAGGTGGAGATGAGATGGAAACTCAAAGAGTGGCTGATCTGTTTAACTGTCAAGCTGGAAAGATGCCTTTTACTTACCTAGGGATCCCAATCAGTATGAATAAACTGACCAACGCTGATTTAGATATTCCTCCCAACAAGATTGAGAAAAGGCTTGCTACTTGGAAATGTGGTTACTTATCTTATGGGGGAAAAGCAATCTTAATAAACTCATGTCTTAGCAGCATTCCTTTATATATGATGGGAGTTTACCTATTACCTGAGGGAGTGCACAATAAGATGGATTCTATTAGAGCGAGATTTTTTTGGGAGGGATTGGAAAAGAAGAGAAAGTACCATATGATTAAATGGGAGGCCTTATGCAGACCTAAAGAGTTTGGAGGACTTGGCTTCATTGACACAAGGAAAATGAACATTGCTTTGTTATGTAAATGGATCTATAGACTTGAATCTGGGAAAGAAGATCCCTGTTGTGTGTTGTTGAGGAATAAATACATGAAGGATGGGGGAGGTTTTTTCCAGTCTAAAGCTGAGGAGAGCTCACAGTTTTGGAAAGGCTTACATGAGGTGAAGAAATGGATGGATTTGGGGAGTTCTTACAAAGTGGGAAATGGTAAAGCAACCAACTTTTGGAGTGATGTTTGGATTGGGGAGACTCCTTTAAAAACTCAGTATCCCAACATTTACAGAATGTGTGCGGATAAAGAGAAGACTGTCTCTCAAATGTGTTTAGAGGGGGACTGGTACATAGAACTGAGAAGATCTCTGGGGGAGAGGGATTTGAATGAGTGGAATGACCTTCATAACACACCAAGGGAGATCCATTTAAAGGAGGAAAGAGACTGTATAATCTGGAAACTAACCAAAAATGGCTTTTACAAAGCGAAAACCTTGTATCAAGCTCTAAGTTTTGGAGGAGTCAAGGACAAAGTGATGCAGGACCTGTGGAGGTCCTCCATCCCCTTGAAAGTCAAAATTTTATTCTGGTTAATGTTAAAGGGGAGAATACAAGCTGCTGGGCAGCTGAAGAAAATGAAATGGTCTGGAAGTCCAAATTGTAAACTGTGTGGGCAGACTGAAGATGTAGATCATTTGATGTTTAGATGCCATATCTCTCAATTTATGTGGTGCTGCTATAGAGACGCCTTTGGTTGGGATAATATTCCTAGTTCTAGGGAAGATCTTTTAGAGAAGTTAAACATTCAAAAAGATGGACAAAAATCTGTTTTGCTTGCATGCTTAGCTGCAGGCACATGGGCGATTTGGCTGATGCGAAACGATTGGGTTTTCAATGGAAAACTAACCTCTGATCCCTCTCATTTGCCTCCAAAGCTGTTTCTTTTCTTCTACAGTGGAGACAACTGGCGCCGCAGATCCAGCGGAGCGATTTGGACGCCTCAAGGGCCTTACTGCTTGCCAGTACTCGAAGGGCAACAGGCTCAAACCCCTGATGAAGACCTGAATGATTTTCAGCTTATACTCCAGGGATGTCTTTTTGGTTGTTCACTCTGA

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CDS seq

ATGACCAAAGAGTTAATGATACCCCAACTAAAAGAACAATTGAGAGAAATGGTGGAACTTTTGTATGAAGGTAAACTGGACATGAGGAGATTAAACTATGGAGTCATAACTTTGATCCCCAAGGTTAAAGATGCTAATACTATCAAATCGTTTAGACCAATATGCCTCCTCAATGTGTGTTTCAAATTTCTCACCAAGATCCTAACAAGGAGGTTGTCTGAAATTGCTCAGAAGGTAATAGGGGAGAGTCAAACTGCCTTTATTCCAGGAAGGCAGAATCTGGATGGGGTGGTTATCCTACATGAAGTTTTACATGAACTAAAAAAAGAGAAGAAATCAGGTATCATCTTCAAGCTCGATTTTGAAAAGGCATACGACAAGGTGCAATGGAGTTTTTTGTTTGATGTTCTGCATAAGAAAGGTTTCAGTGATAGATGGATTCAGTGGGTTAAAATGGCAACCATAGGAGGGAAGATGGCAGTCAATATTAATGGGGAGGTGAAAGACTTCTTTAAGACTTATAGGGGAGTAAGACAGGGGGATCCACTTTCCCCTCTTTTATTCAACTTGGTTGCTGATGCTTTATCCGAAATGTTGAATAATGCTAAACAAGCAGTACCACATTTAGTTCCTGGTGGCTTGACACACTTACAATATGCTGATGATACCATACTTTTCATGACCAACACAGAGGAGAACATTGTTACTGTGAAATTTCTGCTATACTGCTATGAGGCTATGTCTGGTCTTAAGATTAACTACCAAAAGAGTGAGATCATGGTCATAGGTGGAGATGAGATGGAAACTCAAAGAGTGGCTGATCTGTTTAACTGTCAAGCTGGAAAGATGCCTTTTACTTACCTAGGGATCCCAATCAGTATGAATAAACTGACCAACGCTGATTTAGATATTCCTCCCAACAAGATTGAGAAAAGGCTTGCTACTTGGAAATGTGGTTACTTATCTTATGGGGGAAAAGCAATCTTAATAAACTCATGTCTTAGCAGCATTCCTTTATATATGATGGGAGTTTACCTATTACCTGAGGGAGTGCACAATAAGATGGATTCTATTAGAGCGAGATTTTTTTGGGAGGGATTGGAAAAGAAGAGAAAGTACCATATGATTAAATGGGAGGCCTTATGCAGACCTAAAGAGTTTGGAGGACTTGGCTTCATTGACACAAGGAAAATGAACATTGCTTTGTTATGTAAATGGATCTATAGACTTGAATCTGGGAAAGAAGATCCCTGTTGTGTGTTGTTGAGGAATAAATACATGAAGGATGGGGGAGGTTTTTTCCAGTCTAAAGCTGAGGAGAGCTCACAGTTTTGGAAAGGCTTACATGAGGTGAAGAAATGGATGGATTTGGGGAGTTCTTACAAAGTGGGAAATGGTAAAGCAACCAACTTTTGGAGTGATGTTTGGATTGGGGAGACTCCTTTAAAAACTCAGTATCCCAACATTTACAGAATGTGTGCGGATAAAGAGAAGACTGTCTCTCAAATGTGTTTAGAGGGGGACTGGTACATAGAACTGAGAAGATCTCTGGGGGAGAGGGATTTGAATGAGTGGAATGACCTTCATAACACACCAAGGGAGATCCATTTAAAGGAGGAAAGAGACTGTATAATCTGGAAACTAACCAAAAATGGCTTTTACAAAGCGAAAACCTTGTATCAAGCTCTAAGTTTTGGAGGAGTCAAGGACAAAGTGATGCAGGACCTGTGGAGGTCCTCCATCCCCTTGAAAGTCAAAATTTTATTCTGGTTAATGTTAAAGGGGAGAATACAAGCTGCTGGGCAGCTGAAGAAAATGAAATGGTCTGGAAGTCCAAATTGTAAACTGTGTGGGCAGACTGAAGATGTAGATCATTTGATGTTTAGATGCCATATCTCTCAATTTATGTGGTGCTGCTATAGAGACGCCTTTGGTTGGGATAATATTCCTAGTTCTAGGGAAGATCTTTTAGAGAAGTTAAACATTCAAAAAGATGGACAAAAATCTGTTTTGCTTGCATGCTTAGCTGCAGGCACATGGGCGATTTGGCTGATGCGAAACGATTGGGTTTTCAATGGAAAACTAACCTCTGATCCCTCTCATTTGCCTCCAAAGCTGTTTCTTTTCTTCTACAGTGGAGACAACTGGCGCCGCAGATCCAGCGGAGCGATTTGGACGCCTCAAGGGCCTTACTGCTTGCCAGTACTCGAAGGGCAACAGGCTCAAACCCCTGATGAAGACCTGAATGATTTTCAGCTTATACTCCAGGGATGTCTTTTTGGTTGTTCACTCTGA

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Protein seq

MTKELMIPQLKEQLREMVELLYEGKLDMRRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQAVPHLVPGGLTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQMCLEGDWYIELRRSLGERDLNEWNDLHNTPREIHLKEERDCIIWKLTKNGFYKAKTLYQALSFGGVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGSPNCKLCGQTEDVDHLMFRCHISQFMWCCYRDAFGWDNIPSSREDLLEKLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVFNGKLTSDPSHLPPKLFLFFYSGDNWRRRSSGAIWTPQGPYCLPVLEGQQAQTPDEDLNDFQLILQGCLFGCSL

Function LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:P11369]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_10G0063900 OsMH63_10T0063900.1 Chr10 4456317 4458611 + maker
CDS seq

ATGACCAAAGAGTTAATGATACCCCAACTAAAAGAACAATTGAGAGAAATGGTGGAACTTTTGTATGAAGGTAAACTGGACATGAGGAGATTAAACTATGGAGTCATAACTTTGATCCCCAAGGTTAAAGATGCTAATACTATCAAATCGTTTAGACCAATATGCCTCCTCAATGTGTGTTTCAAATTTCTCACCAAGATCCTAACAAGGAGGTTGTCTGAAATTGCTCAGAAGGTAATAGGGGAGAGTCAAACTGCCTTTATTCCAGGAAGGCAGAATCTGGATGGGGTGGTTATCCTACATGAAGTTTTACATGAACTAAAAAAAGAGAAGAAATCAGGTATCATCTTCAAGCTCGATTTTGAAAAGGCATACGACAAGGTGCAATGGAGTTTTTTGTTTGATGTTCTGCATAAGAAAGGTTTCAGTGATAGATGGATTCAGTGGGTTAAAATGGCAACCATAGGAGGGAAGATGGCAGTCAATATTAATGGGGAGGTGAAAGACTTCTTTAAGACTTATAGGGGAGTAAGACAGGGGGATCCACTTTCCCCTCTTTTATTCAACTTGGTTGCTGATGCTTTATCCGAAATGTTGAATAATGCTAAACAAGCAGTACCACATTTAGTTCCTGGTGGCTTGACACACTTACAATATGCTGATGATACCATACTTTTCATGACCAACACAGAGGAGAACATTGTTACTGTGAAATTTCTGCTATACTGCTATGAGGCTATGTCTGGTCTTAAGATTAACTACCAAAAGAGTGAGATCATGGTCATAGGTGGAGATGAGATGGAAACTCAAAGAGTGGCTGATCTGTTTAACTGTCAAGCTGGAAAGATGCCTTTTACTTACCTAGGGATCCCAATCAGTATGAATAAACTGACCAACGCTGATTTAGATATTCCTCCCAACAAGATTGAGAAAAGGCTTGCTACTTGGAAATGTGGTTACTTATCTTATGGGGGAAAAGCAATCTTAATAAACTCATGTCTTAGCAGCATTCCTTTATATATGATGGGAGTTTACCTATTACCTGAGGGAGTGCACAATAAGATGGATTCTATTAGAGCGAGATTTTTTTGGGAGGGATTGGAAAAGAAGAGAAAGTACCATATGATTAAATGGGAGGCCTTATGCAGACCTAAAGAGTTTGGAGGACTTGGCTTCATTGACACAAGGAAAATGAACATTGCTTTGTTATGTAAATGGATCTATAGACTTGAATCTGGGAAAGAAGATCCCTGTTGTGTGTTGTTGAGGAATAAATACATGAAGGATGGGGGAGGTTTTTTCCAGTCTAAAGCTGAGGAGAGCTCACAGTTTTGGAAAGGCTTACATGAGGTGAAGAAATGGATGGATTTGGGGAGTTCTTACAAAGTGGGAAATGGTAAAGCAACCAACTTTTGGAGTGATGTTTGGATTGGGGAGACTCCTTTAAAAACTCAGTATCCCAACATTTACAGAATGTGTGCGGATAAAGAGAAGACTGTCTCTCAAATGTGTTTAGAGGGGGACTGGTACATAGAACTGAGAAGATCTCTGGGGGAGAGGGATTTGAATGAGTGGAATGACCTTCATAACACACCAAGGGAGATCCATTTAAAGGAGGAAAGAGACTGTATAATCTGGAAACTAACCAAAAATGGCTTTTACAAAGCGAAAACCTTGTATCAAGCTCTAAGTTTTGGAGGAGTCAAGGACAAAGTGATGCAGGACCTGTGGAGGTCCTCCATCCCCTTGAAAGTCAAAATTTTATTCTGGTTAATGTTAAAGGGGAGAATACAAGCTGCTGGGCAGCTGAAGAAAATGAAATGGTCTGGAAGTCCAAATTGTAAACTGTGTGGGCAGACTGAAGATGTAGATCATTTGATGTTTAGATGCCATATCTCTCAATTTATGTGGTGCTGCTATAGAGACGCCTTTGGTTGGGATAATATTCCTAGTTCTAGGGAAGATCTTTTAGAGAAGTTAAACATTCAAAAAGATGGACAAAAATCTGTTTTGCTTGCATGCTTAGCTGCAGGCACATGGGCGATTTGGCTGATGCGAAACGATTGGGTTTTCAATGGAAAACTAACCTCTGATCCCTCTCATTTGCCTCCAAAGCTGTTTCTTTTCTTCTACAGTGGAGACAACTGGCGCCGCAGATCCAGCGGAGCGATTTGGACGCCTCAAGGGCCTTACTGCTTGCCAGTACTCGAAGGGCAACAGGCTCAAACCCCTGATGAAGACCTGAATGATTTTCAGCTTATACTCCAGGGATGTCTTTTTGGTTGTTCACTCTGA

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Protein seq

MTKELMIPQLKEQLREMVELLYEGKLDMRRLNYGVITLIPKVKDANTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSGIIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQAVPHLVPGGLTHLQYADDTILFMTNTEENIVTVKFLLYCYEAMSGLKINYQKSEIMVIGGDEMETQRVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKYMKDGGGFFQSKAEESSQFWKGLHEVKKWMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCADKEKTVSQMCLEGDWYIELRRSLGERDLNEWNDLHNTPREIHLKEERDCIIWKLTKNGFYKAKTLYQALSFGGVKDKVMQDLWRSSIPLKVKILFWLMLKGRIQAAGQLKKMKWSGSPNCKLCGQTEDVDHLMFRCHISQFMWCCYRDAFGWDNIPSSREDLLEKLNIQKDGQKSVLLACLAAGTWAIWLMRNDWVFNGKLTSDPSHLPPKLFLFFYSGDNWRRRSSGAIWTPQGPYCLPVLEGQQAQTPDEDLNDFQLILQGCLFGCSL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0088885 0 0.012133

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g07310 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_10g0002860 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_10G0071500 RBH 0 0 0.0515155
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_10g0003060 SBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_10g0003070 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_10G003030 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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