Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0003070 | OGI:12003820 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:4290681-4291514 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaagaaaaggctaaaatctcacagcaaaatttgctacagggtggcaaaaggggctaacaagacctgcagccatccaggtctcccattcatcccccatggccgagcagagctcgggaaccgttgccgcgattctatcgaacacccttgcgtttcgctctttccaaatcaaccaagttacaagtataacccccgcatcgaatgttttgcagtcaaccttagcaacagatttctgtgctgtaagccaccaatcaatgaaatccgccaatggcgaagagcacgaaaggcccagacacgtgcgcacccgaccccaaatctgctgggtgtaagcgcagtccatgaagatctgctaataggtttcccCatcgttggagcacaaatggcacacCtgggcaaggctccatccgcggcattgtagattgtcggcggtgaggcaagcgttgcgcattgcgagaaacataaagaacttgcatctcgccggtgcacgggatttccaaataatcttgccaagcgggcAtttcatcctgcctgccgaaaacagggaataggttgagcgcacagagaacacaccatccgGagctgccttccatatcatctcatcccgactagcagggtcaagagagattccagcgatcacatcccacagatctagatattcgcccaacgcttgaaccgagaggccgtctctgatatctgagacccaggaattattacggagagcagccgccacagtcattccactattcttaacgaaagagaagaggataggtcctctgttttccactgaaccaccatccagcaaccaattgtctttccaaaatagagcatcttatccat
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| CDS seq | atggataagatgctctattttggaaagacaattggttgctggatggtggttcagtggaaaacagaggacctatcctcttctctttctggaatgactgtggcggctgctctccgtaataattcctgggtctcagatatcagagacggcctctcggttcaagcgttgggcgaatatctagatctgtgggatgtgatcgctggaatctctcttgaccctgctagtcgggatgagatgatatggaaggcagctCcggatggtgtgttctctgtgcgctcaacctattccctgttttcggcaggcaggatgaaaTgcccgcttggcaagattatttggaaatcccgtgcaccggcgagatgcaagttctttatgtttctcgcaatgcgcaacgcttgcctcaccgccgacaatctacaatgccgcggatggagccttgcccaGatcttcatggactgcgcttacacccagcagatttggggtcgggtgcgcacgtgtctgggcctttcgtgctcttcgccattggcggatttcattgattggtggcttacagcacagaaatctgttgctaaggttgactgcaaaacattcgatgcgggggttatacttgtaacttggttgatttggaaagagcgaaacgcaagggtgttcgatagaatcgcggcaacggttcccgagctctgctcggccatgggggatgaatgggagacctggatggctgcaggtcttgttagccccttttgccaccctgtagcaaattttgctgtgagattttag
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| Protein seq | MDKMLYFGKTIGCWMVVQWKTEDLSSSLSGMTVAAALRNNSWVSDIRDGLSVQALGEYLDLWDVIAGISLDPASRDEMIWKAAPDGVFSVRSTYSLFSAGRMKCPLGKIIWKSRAPARCKFFMFLAMRNACLTADNLQCRGWSLAQIFMDCAYTQQIWGRVRTCLGLSCSSPLADFIDWWLTAQKSVAKVDCKTFDAGVILVTWLIWKERNARVFDRIAATVPELCSAMGDEWETWMAAGLVSPFCHPVANFAVRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0003070 | OsLiXu_10g0003070.01 | Chr10 | 4290681 | 4291514 | - | NAM | ||
| CDS seq | atggataagatgctctattttggaaagacaattggttgctggatggtggttcagtggaaaacagaggacctatcctcttctctttctggaatgactgtggcggctgctctccgtaataattcctgggtctcagatatcagagacggcctctcggttcaagcgttgggcgaatatctagatctgtgggatgtgatcgctggaatctctcttgaccctgctagtcgggatgagatgatatggaaggcagctCcggatggtgtgttctctgtgcgctcaacctattccctgttttcggcaggcaggatgaaaTgcccgcttggcaagattatttggaaatcccgtgcaccggcgagatgcaagttctttatgtttctcgcaatgcgcaacgcttgcctcaccgccgacaatctacaatgccgcggatggagccttgcccaGatcttcatggactgcgcttacacccagcagatttggggtcgggtgcgcacgtgtctgggcctttcgtgctcttcgccattggcggatttcattgattggtggcttacagcacagaaatctgttgctaaggttgactgcaaaacattcgatgcgggggttatacttgtaacttggttgatttggaaagagcgaaacgcaagggtgttcgatagaatcgcggcaacggttcccgagctctgctcggccatgggggatgaatgggagacctggatggctgcaggtcttgttagccccttttgccaccctgtagcaaattttgctgtgagattttag
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| Protein seq | MDKMLYFGKTIGCWMVVQWKTEDLSSSLSGMTVAAALRNNSWVSDIRDGLSVQALGEYLDLWDVIAGISLDPASRDEMIWKAAPDGVFSVRSTYSLFSAGRMKCPLGKIIWKSRAPARCKFFMFLAMRNACLTADNLQCRGWSLAQIFMDCAYTQQIWGRVRTCLGLSCSSPLADFIDWWLTAQKSVAKVDCKTFDAGVILVTWLIWKERNARVFDRIAATVPELCSAMGDEWETWMAAGLVSPFCHPVANFAVRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g07160 | RBH | 0.000000 | 0.0 | 0.127963 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003200 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003100 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005410 | RBH | 0.0 | 0.134453 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0063900 | RBH | 0.0088885 | 0 | 0.012133 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0078500 | RBH | 1.354529 | 3.231107 | 1.009819 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0020270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0003340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005510 | RBH | 0.0 | 0.0 | 0.0 |
