Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0005410 | OGI:12003820 | 14/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:4056669-4056988 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAAGAAAAGGCTAAAATCTCATAGCAAAATTTGCTACAGAGTGGCAAATGGGGCTAACAAGACCTGCAGCCATCCGGGTCTCCCATTCATCCCCCATGGCCGAGCAGAGCTCGGGAACCGTTGCCGCAATTCCATCGAACACCCTCGCGTTTCGCTCTTTCCAAATCAACCAAGTTACAAGTATAACCCCCGCATCGAATGTTTTGCGGTCAACCTTAGCAACAGATTTCCGTGCTGTAAGCCACCAATCAATGAAATCCGCCGACGGCGAAGAGCATGAAAGGCCCAGACGCGTGTGAGGAAACTGGACTAACATACAT |
||||||||||
| CDS seq | ATGTATTTTCCTCACACGCGTCTGGGCCTTTCATGCTCTTCGCCGTCGGCGGATTTCATTGATTGGTGGCTTACAGCACGGAAATCTGTTGCTAAGGTTGACCGCAAAACATTCGATGCGGGGGTTATACTTGTAACTTGGTTGATTTGGAAAGAGCGAAACGCGAGGGTGTTCGATGGAATTGCGGCAACGGTTCCCGAGCTCTGCTCGGCCATGGGGGATGAATGGGAGACCCGGATGGCTGCAGGTCTTGTTAGCCCCATTTGCCACTCTGTAGCAAATTTTGCTATGAGATTTTAG |
||||||||||
| Protein seq | MYFPHTRLGLSCSSPSADFIDWWLTARKSVAKVDRKTFDAGVILVTWLIWKERNARVFDGIAATVPELCSAMGDEWETRMAAGLVSPICHSVANFAMRF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0005410 | OsARC_12g0005410.01 | Chr12 | 4056669 | 4056988 | - | NAM | ||
| CDS seq | ATGTATTTTCCTCACACGCGTCTGGGCCTTTCATGCTCTTCGCCGTCGGCGGATTTCATTGATTGGTGGCTTACAGCACGGAAATCTGTTGCTAAGGTTGACCGCAAAACATTCGATGCGGGGGTTATACTTGTAACTTGGTTGATTTGGAAAGAGCGAAACGCGAGGGTGTTCGATGGAATTGCGGCAACGGTTCCCGAGCTCTGCTCGGCCATGGGGGATGAATGGGAGACCCGGATGGCTGCAGGTCTTGTTAGCCCCATTTGCCACTCTGTAGCAAATTTTGCTATGAGATTTTAG
More
|
|||||||
| Protein seq | MYFPHTRLGLSCSSPSADFIDWWLTARKSVAKVDRKTFDAGVILVTWLIWKERNARVFDGIAATVPELCSAMGDEWETRMAAGLVSPICHSVANFAMRF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.134453 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g37310 | SBH | 0.144271 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005330 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003070 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0023500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0024700 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0003280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005510 | RBH | 0.0 | 0.0 | 0.0 |
