Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0235100 | OGI:09041060 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr09:15324734-15325711 | ||||||||
| Gene Symbol | RL9, rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, AH2 | ||||||||||
| DNA seq | ATGGCAATGGTGCGGGAGCTCGAGTTGATGACGAGCTGGAGCAACAGCATGGGGCGACACCGCTACCCAACGCGCATCCTCGTCGATTCCTTCGGGCATAAGTGCAGTGCCTCTGACAAGGGTGTGTGGACCTCCTGCAGCATTCGCGCACCCTTGCAAGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTATGAGACTACGCTCCATGGTGGAGCGTTGGGCGTGACCTTAGTGTGCGCATATGTAAGCTGTATGCGTACGTATAAATGTTGAGCTTGCAGTACATGTATACTTGTTTTTTTCTTCTTTTTTATGAGGTCCTTTAATTCCATTGTCTGTATTATTTATGCTAGTATGGAGGATGATGGTGGCAGTGACATAAAGTATACAAAAAGCATAGTATAGTATACGTATGGAAACAAAAGCATGCTACCTTTGACTCCACTTGCATTGCCTGCTAACTGCCATTATTTAAGGAATACATGGTTGAATGCCTGCCTAAACATCAAGATAACCTCACATTCTCCTCTCTCTCTCTCTCCTACCTTGCAATTAAGGGTAGCAGCAGTACTCTCCTCACTGCTGGCTGACTGCTCCCATTTTCTCTCTCTACTCTCTCTCTCTCTCTCTCCTCTATTCCTTTTATACTTGTTGTTGGTAGCTAGGAGTATAGCAGGACAGCACAAGGAACCAATTCATGCATATATCCCTGGTGTCTCTCATGCATGTTAGTGTGAAGAAAGAAGAAGCTTGAGAGAGAAGAGAGAGTTAGAGAGAGAAAGTAGAGTGTTTGTAGAGAGAGAAAGTGGTGTGTGTACTAGTAGTAACTCCAAGCCAGTGCTAGAGACAGAGATACAAAAAGGAGACATCATCCTTCTCTTGGCCAAAGCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGA
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| CDS seq | ATGGCAATGGTGCGGGAGCTCGAGTTGATGACGAGCTGGAGCAACAGCATGGGGCGACACCGCTACCCAACGCGCATCCTCGTCGATTCCTTCGGGCATAAGTGCAGTGCCTCTGACAAGGGTGTGTGGACCTCCTGCAGCATTCGCGCACCCTTGCAAGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTATGAGACTACGCTCCATGGTGGAGCGTTGGGCGTGACCTTAGTTAACTCCAAGCCAGTGCTAGAGACAGAGATACAAAAAGGAGACATCATCCTTCTCTTGGCCAAAGCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGA |
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| Protein seq | MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGRYETTLHGGALGVTLVNSKPVLETEIQKGDIILLLAKASNQAKLPLLLQELQEPSPSSSPP |
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| Function | Probable transcription factor RL9 [UniProtKB/Swiss-Prot:Q0J235] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0235100 | OsMH63_09T0235100.1 | Chr09 | 15324734 | 15325711 | + | maker | ||
| CDS seq | ATGGCAATGGTGCGGGAGCTCGAGTTGATGACGAGCTGGAGCAACAGCATGGGGCGACACCGCTACCCAACGCGCATCCTCGTCGATTCCTTCGGGCATAAGTGCAGTGCCTCTGACAAGGGTGTGTGGACCTCCTGCAGCATTCGCGCACCCTTGCAAGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTATGAGACTACGCTCCATGGTGGAGCGTTGGGCGTGACCTTAGTTAACTCCAAGCCAGTGCTAGAGACAGAGATACAAAAAGGAGACATCATCCTTCTCTTGGCCAAAGCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGA
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| Protein seq | MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGRYETTLHGGALGVTLVNSKPVLETEIQKGDIILLLAKASNQAKLPLLLQELQEPSPSSSPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.2251875 | 0.2470885 | 0.5267595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23200 | SBH | 0.0 | 0.0 | 0.117313 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009290 | SBH | 0.0 | 0.0 | 0.460470 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009230 | SBH | 0.0 | 0.0 | 0.550381 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009480 | SBH | 0.0 | 0.0 | 2.371274 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009240 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009440 | SBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009410 | SBH | 0.0 | 0.0 | 0.051067 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0220600 | RBH | 0.232474 | 0.086994 | 3.3296785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009400 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009310 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009130 | SBH | 0.0 | 0.0 | 0.063486 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009150 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009680 | SBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009470 | SBH | 0.0 | 0.0 | 1.577600 |
