Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_09g0009230 OGI:09041060 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr09:14270225-14277647
Gene Symbol RL9, rl9, SLL1/RL9, SLL1, OsSLL1, OsADD1, ADD1, AH2
DNA seq

atggcaatggtgcgggagctcgagttgatgacgagctggagcaacaGcatggggcgacaccgctaCccaacgcgcatcctcgtcgattccttcgggcataagtgcagtgcctctgacaagggtgtgtggacctcctgcagcattcgcgcacccttgcaaggacgcggctccttccgacgtggcgcgaatattcgctttgggaggtatgagactacgctccatggtggagcgttgggcgtgaccttagtgtgcgcatatgtaagctgtatgcgtacgtataaatgttgagcttgcagtacatgtatacttgtttttttCttcttttttatgaggtcctttaattccattgtctgtattatttatgctagtatggaggatgatggtggcagtgacataaagtatacaaaaagcatagtatagtatacgtatggaaacaaaagcatgctacctttgactccacttgcattgcctgctaactgccattatttaaggaatacatggttgaatgcctgcctaaacatcaagataacctcacattctcCTctctctctctctcctaccttgcaattaagggtagcagcagtactctcctcactgctggctgactgctcccattttctctctctaCTctctctctctctctctcTCCTCTATTCCTTTTATACTTGTTGTTGGTAGCTAGGAGTATAGCAGGACAGCACAAGGAACCAATTCATGCATATATCCCTGGTGTCTCTCATGCATGTTAGTGTGAAGAAAGAAGAAGCTTGAGAGAGAAGAGAGAGTTAGAGAGAGAAAGTAGAGTGTTTGTAGAGAGAGAAAGTGGTGTGTGTACTAGTAGTAACTCCAAGCCAGTGCTAGAGACAGAGATACAAAAAGGAGACATCATCCTTCTCTTGGCCAAAGCAAGCAACCAAGCAAAGCTTCCTCTTCTTCTCCAAGAACTCCAAGAACCTTCTCCTTCATCTTCTCCACCATGATTCCTTCCATCGCATGAGCTCCATCTCCGGCGTGTCGATCGAGATCACCGTTGCTGCTGCCGAGGTGGAGAAGGAGGTGTTTGATCGATCGGTCGATGGAGGCGAGCTCGGCGGCGACGCCACCGGACCTGTCGCTGCACATCAGCTTGCCGAGCAGCGCGGCGGTGGCGACGTCGGGGGGAGGGCGTGGCGGCGGCGGGGTGGTGGTGGGAGGAGGAGGAGGGGACCCGTGGCGGAGGCTGGATGGGTCCACGGCGTCGACGGAGTTGTCGCTGTCGCCGCCGCCGGCGCAGGCGGCGGGTGGGGGAGGTGGTGGTGGTGGAGCGGACGCGCTGCCGTGGCGGCACCGACCTTCGCCGCCGTCGTCGGCGGTGGCCACCACGTCTGCCGCCGCCGCGGCGGCGCTGATGGCGCCGATGATGCTGCAGCCGCTCGACGCCGGCGGCGGCGCGTCGGCGCCGCcgccgccgccgatccgcgggatacctatctacaacggccccggcgggttcccgttcctgcagccgtcgcccaccgccggcgacgtcggccaccaccaccaccaccaccccaagatgggattctacagctcgtaccaccacccatccacgtggccctccacgtcgccgtccccgctcgcggcgccgccgggcgccgcgtcgtcgccgctcgaccccacggcggcgttcctctcctccccccaccaccggatgctgtccgccgcctcggggaggctcaacggcatgctctccgtctccgacaccctccgcagctacggcgtcccCGgCgccgccgcccccggcgtcatcggcggcgcgcaccaccaccaccaccacctccacggcggccagccgttcgtcggcgCcctcgcgtCccgcttcatgcccaagctccccgccaagcgcagcatgcgcgcgccgcgcatgcgctggacgagcaccctccacgcccgcttcgtccacgccgtcgagctcctcggcggccacgagagtacgcccccgccatcatcgtcgtcgtcctcctcctccttctcaccaccatcatcaacgagctcgatcaatctgatgagaatccaatcttgttcttggcaggggcgacgcccaagtcggtgctggagctcatggacgtcaaggatctgacgctagcgcatgtcaagagccacctccaggtatCccgccattgccgaccaattctcacagctcgatcgatcgatcaaacaccactcaccactgcaccatctctctctttctctctctcgatttcgattccattcagcttctgttcttgatcatcttgtttgggtgagacaaagatgccaatgcagtaactcctgagttagtgaagaaactgccattcttGggagtAGagagagagagagagagagagtgtgacatgtttggggatgtgtgtgcaagagagaagagagagagagaggggAaaaaagttgccatcattacacaataatgcattgcatctgcatctgtgctactagctccttccttagctttagtcatactagcgtatatgtgcacggcccaaagcactctcacacacaaacacaagagagagagagagagaagaagatgagagatgagagagagtaggacatattttgtgtgtgtttctttgctgcttgtcttttgcaatggcttcaacctcctggtttcattttgatctcacaaaaaatgtgtgtgtgtgtgtgtaaatatatatattgatcttctttttgttggacTtttgtgttttattactgcagatgtatcgcaccgtgaagagcactgacaagcctgcagcctcttcaggtgattttttttaccatggcagctactagtagtagtagtagtagctaatttagctaagctccattttgcttttcTttttttttggcgttgtgcattgcgttttacattacattgttgctatggtttttttgacgtgtagggccggcggacggcggctccggcgacgaggagttcgccggcggcgggcaggcggcgtcgggcggcggcgacagcatgtgcctgaggggtggcggcggcggcggggtggccgcggcggcgttcgcggagcacggccggtcggcgtcggagggcgccgccagctcggtcggcggcggcggcggcggcgacatggaccagtcgtcggccggcaacaccagcaccaccaggtggagcaactcctcaaggtacacacatggcagagttgcatttcaagtctttcagattaattatatatctacattgttatgccatctttaattaattaaaaatgaaattaatcaatcagaatgtcatgagatgatgatgatgatgataataatactaggataggaagaggatgatatgatggatgggtgtgctatgtgtgtttttaagtgtgttttagcttagaaccaaaggcaacaccaacaaactttggcatgcatTGAtgatgtatctaaatatgagttagtgacatgcaaaattaacctgccaagtacaacctctatttattaattcccaaaaaaatctcatggaggagaagggagagagagagatagtagtaatgtgtggtgatgcatggctaaaaaagcttagcaaaagaatgttttgggggcgCAcacacacacacacctggagagggagttgcctatgtttaggtggccaatgttgttatgtcacacaaaagaccaaaaagtcacacaccccatggcttggcctcctcctcccccCTtgacctgtgcagttagctaggcttctTCtcttctctccctctgtgtttggtttttgtggagctaaaaacattttaaaaatcttgcaaacattgtgtgtaaaaataggttcttgggctctgcccattgtcctctagcttctctcaaatctctctctctctctctctctctctctctctctttctcaaacctagggaggggagggttactcaggcagggctccattatcatttcttatcaatgcatggctctgattccagggggatggggctttgacctgacatgccctattgcctaggaatatgtaaccaaggacttgctgcattcttggttctttctccctctctcaccagtctcttcaatgcccttttcttccacctcttgggcaattattagcatggatggagctcaccttttcactctaccctctagctgtgattaaatcattgactaatcctaattcataaatataagggattcaactatgtaactagatgtactagatcctagtattactagtgtgttttgattctgttaggaggagtgattagcgtttgtcgtaagtactagtattaaactataggggattagtgtagatcattttttaaaaaattagtgagtgtgcttgggcagattttactccagccattggcgtgaaaactttgatcTttgggcagcttggaagcaagtacagttcaacctgtccttggctgcattcgctgcTttttctttctcaggactcactgcaactttcttgccatccccaacacctccctttcggtcgtgtttgatcagttgcattgctggtttcttcgccgctttaatttctccatctttcttctgttccttattggctaagtaaaaaatcaTtctcagcaatcaagttttgaaattcaaattagcttcaggttttatctatctaataattctctgactagttctctttctttcaagacctgttcttgttcagaactcttatgcagttgagagttcagttgttcatggaagtaatggcaatgcctggtctagtctttgagcagtatcctccttatgctcttgattttccttcactttagccgtttcagtcaaactttggggacaaattaaagtcagctggtcaagtgcatacataccacgtcatattttttagatgaatccattgtagtattaaatactagtgacaaaaaaatataactaaatggcattaaattgcaaccttcttccccaaaataattgggcacaactaccttgcttgcatatgctttatagtactcctacttattacttccttgaatccatgaggattccaggaaTttggtcaggtcaaatgtccaggaggaattaggctatctttttttatcttcttctttttcttctaggtagtaggatcgttgtgcacatataaacaaaacaaaatagaaatttaagaggaaaccctcccaaaaaaaatacgactatcaattatgagtgattttacagttcttgaggaggtacaatgatacattttctattttaaaattcagtaactttgatactatgaggtacagaaatttgcAaaaaaaaatttggtacctctcaagtacttaaaatatcttatcaattatatttcagcaatgttgtcgttgctcgagttgtgcaaaaacatttctgatgaacaagtgaagatgtatgcatatttagagagggaaacacatgcattttttaatatacattctcatgacaaattttggtgttctcgtctcattttagtctagcttagattaatggcatccatatattggtgaactgaaacagattgtatatgtccagtcttgaacaaacttcattatacaatgcataatcagaaaagatacagacatatattggcagatcacataaagtggtgtatctatgattgggtggtattttggacatacaaagtctactggtccctcatttgttaacagcatacatttgttcctatcaagacaaaagcactttacaacagtttggtagtaagttggtgttatgtgcgtgtctatttagatagagtggtagtaaaggaaggacactttttcttgatataccaaaatcacacataaaaaagaagtgtcattttcatgatcaacatgtggggtatgaacaaaaatgttctcccccctccaaccaacattgaagtcatcacacataaaaagcaaaaacatttaacaataatacatgcagacacatgtgcatgcatgtgtggatcacgcaaggacatactaattcaattaggtattcacaattaattagtgcaggaaatgacatgtaattacaattatatatgcacaacgatccttgtgtatttgtgtgacccattgtagtagcatttgattcctttcttgtgcctttctctacattgaattcgatctttgccaacagcggcttgctgatgagctcctgtgccattgcactgctgagctgcaccaaacagggacatcttttaagagcttgttgcctggaaatgatccatgtaaccaactgttcaggaagagcacactgtttgctgctcactttagctaaagcaaaactgtgtgcattatgcaatgcatatgcatccttccatctacccctgtgtcctttgcccccCaaactgtgtaactacagtttaccatgcacatacatacaatgcacatctacccaattgtagcattgttgcaaggcctacttcagaattcagttagtccccaattgatccaactgcacacatatacatttacatatacatatacacaaacataccagcttggagaaaaggttgtaacaactttgctaaatgtgagatgtgtaatgtgtgttcttcctcTtttcagggacccatggctgtcgtccaattcttgcaacatggacgcccatcgctccgtaggattgtcttctcctattgaggtatatatccttacattgttcaaagcttctttcgattcctagctaactgcatatccatgcagaaattcattagctcgcattcattctgaacatgatgtctgaaactctgaattttttttcgtttgtgcgtgtttcagaacttggaaccgtgcagatcgagcagctcgcaggtgtccaaccatgagctgagtagccctagtctcgagttcactctagggaggcctgactggcacggtgcagatcatgattagatggcaatcacagaggctaatgatcaaaaaaaaatttctcctgagatgtgaaatatatgtgatatacaccaatctggtgctgatcatctttcgccaaccccagcttagccagagccagttcgtctgaagcttgtcatggcgaagaatgatcagcagcaatggcttgaaacgcagatcatatccactgcgtcgtcgtcatcgtcgtcgcaatcgatcagagaagagatatatatttcgcgtctcgatctcatcatcacaatttgggttttcttgattccttcttcttcttcTttttgcaattaatatcatggatgcagctagagtttccttgtctgatctccatatttatttagttttgttcgccgtgccgggatcgaTttacagtgtagttcagtggtgagctagctagctagagagtgagtgagtgagtgtcagctaggcagctggagatcgagagtgtgagtttggtgatgagttggttgtgtgtttgtcagtgtgtgtgaaagtgtgtgtgccattagcacatggaaagttggaaaggagagaaaggaagaaagaaaagggaattgagttcaggt

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CDS seq

atggcaatggtgcgggagctcgagttgatgacgagctggagcaacaGcatggggcgacaccgctaCccaacgcgcatcctcgtcgattccttcgggcataagtgcagtgcctctgacaagggtgtgtggacctcctgcagcattcgcgcacccttgcaaggacgcggctccttccgacgtggcgcgaatattcgctttgggagCTTGCCGAGCAGCGCGGCGGTGGCGACGTCGGGGGGAGGGCGTGGCGGCGGCGGGGTGGTGGTGGGAGGAGGAGGAGGGGACCCGTGGCGGAGGCTGGATGGGTCCACGGCGTCGACGGAGTTGTCGCTGTCGCCGCCGCCGGCGCAGGCGGCGGGTGGGGGAGGTGGTGGTGGTGGAGCGGACGCGCTGCCGTGGCGGCACCGACCTTCGCCGCCGTCGTCGGCGGTGGCCACCACGTCTGCCGCCGCCGCGGCGGCGCTGATGGCGCCGATGATGCTGCAGCCGCTCGACGCCGGCGGCGGCGCGTCGGCGCCGCcgccgccgccgatccgcgggatacctatctacaacggccccggcgggttcccgttcctgcagccgtcgcccaccgccggcgacgtcggccaccaccaccaccaccaccccaagatgggattctacagctcgtaccaccacccatccacgtggccctccacgtcgccgtccccgctcgcggcgccgccgggcgccgcgtcgtcgccgctcgaccccacggcggcgttcctctcctccccccaccaccggatgctgtccgccgcctcggggaggctcaacggcatgctctccgtctccgacaccctccgcagctacggcgtcccCGgCgccgccgcccccggcgtcatcggcggcgcgcaccaccaccaccaccacctccacggcggccagccgttcgtcggcgCcctcgcgtCccgcttcatgcccaagctccccgccaagcgcagcatgcgcgcgccgcgcatgcgctggacgagcaccctccacgcccgcttcgtccacgccgtcgagctcctcggcggccacgagagggcgacgcccaagtcggtgctggagctcatggacgtcaaggatctgacgctagcgcatatgtatcgcaccgtgaagagcactgacaagcctgcagcctcttcagggccggcggacggcggctccggcgacgaggagttcgccggcggcgggcaggcggcgtcgggcggcggcgacagcatgtgcctgaggggtggcggcggcggcggggtggccgcggcggcgttcgcggagcacggccggtcggcgtcggagggcgccgccagctcggtcggcggcggcggcggcggcgacatggaccagtcgtcggccggcaacaccagcaccaccaggtggagcaactcctcaagggacccatggctgtcgtccaattcttgcaacatggacgcccatcgctccgtaggattgtcttctcctattgagaacttggaaccgtgcagatcgagcagctcgcaggtgtccaaccatgagctgagtagccctagtctcgagttcactctagggaggcctgactggcacggtgcagatcatgattag

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Protein seq

MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGSLPSSAAVATSGGGRGGGGVVVGGGGGDPWRRLDGSTASTELSLSPPPAQAAGGGGGGGGADALPWRHRPSPPSSAVATTSAAAAAALMAPMMLQPLDAGGGASAPPPPPIRGIPIYNGPGGFPFLQPSPTAGDVGHHHHHHPKMGFYSSYHHPSTWPSTSPSPLAAPPGAASSPLDPTAAFLSSPHHRMLSAASGRLNGMLSVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHMYRTVKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLEPCRSSSSQVSNHELSSPSLEFTLGRPDWHGADHD

Function Probable transcription factor RL9 [UniProtKB/Swiss-Prot:Q0J235]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_09g0009230 OsKeNa_09g0009230.01 Chr09 14270225 14277069 + NAM
CDS seq

atggcaatggtgcgggagctcgagttgatgacgagctggagcaacaGcatggggcgacaccgctaCccaacgcgcatcctcgtcgattccttcgggcataagtgcagtgcctctgacaagggtgtgtggacctcctgcagcattcgcgcacccttgcaaggacgcggctccttccgacgtggcgcgaatattcgctttgggagCTTGCCGAGCAGCGCGGCGGTGGCGACGTCGGGGGGAGGGCGTGGCGGCGGCGGGGTGGTGGTGGGAGGAGGAGGAGGGGACCCGTGGCGGAGGCTGGATGGGTCCACGGCGTCGACGGAGTTGTCGCTGTCGCCGCCGCCGGCGCAGGCGGCGGGTGGGGGAGGTGGTGGTGGTGGAGCGGACGCGCTGCCGTGGCGGCACCGACCTTCGCCGCCGTCGTCGGCGGTGGCCACCACGTCTGCCGCCGCCGCGGCGGCGCTGATGGCGCCGATGATGCTGCAGCCGCTCGACGCCGGCGGCGGCGCGTCGGCGCCGCcgccgccgccgatccgcgggatacctatctacaacggccccggcgggttcccgttcctgcagccgtcgcccaccgccggcgacgtcggccaccaccaccaccaccaccccaagatgggattctacagctcgtaccaccacccatccacgtggccctccacgtcgccgtccccgctcgcggcgccgccgggcgccgcgtcgtcgccgctcgaccccacggcggcgttcctctcctccccccaccaccggatgctgtccgccgcctcggggaggctcaacggcatgctctccgtctccgacaccctccgcagctacggcgtcccCGgCgccgccgcccccggcgtcatcggcggcgcgcaccaccaccaccaccacctccacggcggccagccgttcgtcggcgCcctcgcgtCccgcttcatgcccaagctccccgccaagcgcagcatgcgcgcgccgcgcatgcgctggacgagcaccctccacgcccgcttcgtccacgccgtcgagctcctcggcggccacgagagggcgacgcccaagtcggtgctggagctcatggacgtcaaggatctgacgctagcgcatatgtatcgcaccgtgaagagcactgacaagcctgcagcctcttcagggccggcggacggcggctccggcgacgaggagttcgccggcggcgggcaggcggcgtcgggcggcggcgacagcatgtgcctgaggggtggcggcggcggcggggtggccgcggcggcgttcgcggagcacggccggtcggcgtcggagggcgccgccagctcggtcggcggcggcggcggcggcgacatggaccagtcgtcggccggcaacaccagcaccaccaggtggagcaactcctcaagggacccatggctgtcgtccaattcttgcaacatggacgcccatcgctccgtaggattgtcttctcctattgagaacttggaaccgtgcagatcgagcagctcgcaggtgtccaaccatgagctgagtagccctagtctcgagttcactctagggaggcctgactggcacggtgcagatcatgattag

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Protein seq

MAMVRELELMTSWSNSMGRHRYPTRILVDSFGHKCSASDKGVWTSCSIRAPLQGRGSFRRGANIRFGSLPSSAAVATSGGGRGGGGVVVGGGGGDPWRRLDGSTASTELSLSPPPAQAAGGGGGGGGADALPWRHRPSPPSSAVATTSAAAAAALMAPMMLQPLDAGGGASAPPPPPIRGIPIYNGPGGFPFLQPSPTAGDVGHHHHHHPKMGFYSSYHHPSTWPSTSPSPLAAPPGAASSPLDPTAAFLSSPHHRMLSAASGRLNGMLSVSDTLRSYGVPGAAAPGVIGGAHHHHHHLHGGQPFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHMYRTVKSTDKPAASSGPADGGSGDEEFAGGGQAASGGGDSMCLRGGGGGGVAAAAFAEHGRSASEGAASSVGGGGGGDMDQSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLSSPIENLEPCRSSSSQVSNHELSSPSLEFTLGRPDWHGADHD

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Gene Transcript Chromosome Start End Strand Source
OsKeNa_09g0009230 OsKeNa_09g0009230.02 Chr09 14271127 14277647 + IsoSeq
CDS seq

atggcgaagaatgatcagcagcaatggcttgaaacgcagatcatatccactgcgtcgtcgtcatcgtcgtcgcaatcgatcagagaagagatatatatttcgcgtctcgatctcatcatcacaatttgggttttcttgattccttcttcttcttcTttttgc

Protein seq

MAKNDQQQWLETQIISTASSSSSSQSIREEIYISRLDLIITIWVFLIPSSSSFC

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A5 Chr09 14272354 14272961 + OsKeNa_09g0009230.02 OsKeNa_09g0009230.01,OsKeNa_09g0009230.02 All

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.550381

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_09g0395300 RBH 0.0 0.0 0.642601
Nipponbare | IRGSP 1.0 | MSU LOC_Os09g23200 RBH 0.0 0.0 0.117313
Nipponbare | IRGSP 1.0 | RAP-db Os09g0395300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_09g0009290 RBH 0.0 0.0 0.460470
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_08g0016540 RBH 0.000000 0.0 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_09g0009480 RBH 0.0 0.0 2.371274
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_09g0009240 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_09g0009440 RBH 0.0 0.0 0.000000
Minghui 63 | MH63RS3 | HZAU OsMH63_09G0235200 RBH 0.8370265 0.616837 1.597891
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_09g0009410 RBH 0.0 0.0 0.051067
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_09G0220700 RBH 0.9240405 0.3973335 8.6732325
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_09g0009400 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_09g0009180 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_09g0009310 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_09g0009130 RBH 0.0 0.0 0.063486
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_09g0009150 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_09G009680 RBH 0.0 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_09g0009470 RBH 0.0 0.0 1.577600
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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