Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0347900 | OGI:07002380 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:23631905-23633202 | ||||||||
| Gene Symbol | MSL27, OsMSL27, - | ||||||||||
| DNA seq | ATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACATGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGTAATATTTGCAAATTCAGTTTCACTTGTTGTTTGCATCAAACCTTTTTTGTTTCATATTGCTGCTGAAACTGAAATTGTTAAATGTTTGTCAAATTTAGGGATGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTGAGCTTTATATTTTTTTTATCAGTGGTTTGTTTGTTTTGTTGAAATGTTTTAGGCAAGTTATGCTGATCGTGAGGAGAATATAATTGTGCAGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| CDS seq | ATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACATGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGATGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | MPSKGSSQMTMTNQRNLSDRRAQQPLSHVYVDVDSEHGTAERQEIGMTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0347900 | OsMH63_08T0347900.1 | Chr08 | 23631905 | 23633202 | + | maker | ||
| CDS seq | ATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACATGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGATGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | MPSKGSSQMTMTNQRNLSDRRAQQPLSHVYVDVDSEHGTAERQEIGMTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.0115265 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643100 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02500 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0643100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017880 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017740 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017670 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017930 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017790 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0015100 | SBH | 0 | 0.0207445 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017720 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0034400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017160 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017550 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017610 | RBH | 0.0 | 0.0 | 0.0 |
