Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os03g0643100 | OGI:07002380 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr03:24792645-24794517 | ||||||||
| Gene Symbol | MSL16, OsMSL16 | ||||||||||
| DNA seq | GCATTTGACCACCATGGCATTCAAGGTCAATTACTAGTCTTGTACTCCAAGTTTGTCACATTCTACTTAATGAAGTAACTACTTGCATGCACTCCCTCTAAGCAAAAGTATATCCTACTACTATCTGCTTCACAAAAGTACCCCTTTGTTTCACAAAAGTACTATCCTTCTATTTGCATGCCATCTATTTCACAAAAGTACTATCCTACTACTTGCATGCCATATGTTTCACAAAAGTACTCACTCTAATGCTGCGATTTCCTTTCTAATCCAAGCCAGGCGTAATGCATCACTTGAAAAGGACAAGAAAACTTCCCTATTATCCTTACCTTTGAAGATATCAGCTGCCACCAATATATCTCCTATTTGTAGACCATGTAAACCTTCAAGCACTGTGATACACTTGTTGATGCTGTAAGGATCCTCCAATTTCTTCTCCTCAATTGCAGCAAATCGATCTATTTCTTCTTTTTTAAGTTTTAGGTATCTCTCATGAAATCCATCATCAGGACTAACAGATTTGATCTTTTGTTTCTTCCCAGGTCGAGATTCAGGAACCTCTGAAGGTGTTTGTGCCGAGCTAGGTGGGACTTTTGTGAGATGGACAGGGGTAGGTGAATGCTGTGAAAAGTCCAAATTGGCTGTCTCAACCTCTTCACCAAAAGGAAATTGCAAACCTGATTCACCTGGAGCATTTGAATTAGGGGATGGTGACTGATATGTATCAACCGCATTTGCTTCTTGTGTTGAATGAGCTGGTGCATTCTTTGTCTTCCTTGCATAATGGTCCATACCATGGCGAGTTCTCCCTTCAGCATAACGACCTGCACAATTATATTCTCCTCACGATCAGCATAACTTGCCTAAAACATTTCAACAAAACAAACAAACCACTGATAAAAAAAATATAAAGCTCACCATCATAAAGTGGAGCTAAATCATCAAAATATGGGAACGACTTATCTCGCCAATGAATTGCATCTTTGTTCTTGCGATCAGCAAAAGTGTCCCAAACACTTTGTGGTGCACTCACCATCATTCTGTCACTATCCCACCCAAAACCACTTTGATCCAACAAATCTTTAACACTGCGATAATCTTTCTTCAAATCCTGCTCCTTTTGCTTGACTTGGTTGGTCGTAAATGATGTACCGAATTTTGTATTCAGGCGGCAAACAATATTTGTCCATGCTTCCTTACTCCAAGCATTTTGTGTTCGAAAACCTGGCACGTCATGATCTGTTAGGAGCTCAATAAGGAACATCTTCATCTGGTGACTCCATCTGGCTCTCTTTGTCGTCCCTAAATTTGACAAACATTTAACAATTTCAATTTCAGCAGCAATATGAAACAAAAAAGGTTTGATGCAAACAACAAGTGAAACTGAATTTGCAAATATTACCTATTTCTTGACGCTCTGCAGTCCCATGCTCACTGTCAACATCAACATAAACCTGTGATAGAGGTTGCTGGGCTCGTCGATCGGACAAATTGCGTTGATTTGTCATGGTCATCTGAGAAGAGCCTTTCGATGGCATTGCTTTCCTAACCCCCAAAAAAAAGAAAGAAAAAAGAAATACACAATCCTTATCAGAGAGGGATTTACACCTACAGTGCCAATGAAACAAACTAGTTCCAAGTAGTCAGCTTAAAAATTCACTAATCCATAGATCCAAAGTACAGAAGCACTAATAAGTCAATAATAAGTCAAGTATGAAAGCTCAAAAGTGCAGACAAATACCAAATCGATGGCCCTGGCTGCTGCCCTCGATGGCGGACCTGCCGCACGCCTCCGCCTAGCGGAGCCCAACCTGCGCGCCAGATGGATGCTGTGCTTGGTTGTTGCGTGCTGCTAGTTGTTGGGCCGGCGTCC
More
|
||||||||||
| CDS seq | GACGCCGGCCCAACAACTAGCAGCACGCAACAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATCGATTTGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
More
|
||||||||||
| Protein seq | DAGPTTSSTQQPSTASIWRAGWAPLGGGVRQVRHRGQQPGPSIWKAMPSKGSSQMTMTNQRNLSDRRAQQPLSQVYVDVDSEHGTAERQEIGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os03g0643100 | Os03t0643100-01 | Chr03 | 24792645 | 24794517 | - | irgsp1_rep | ||
| CDS seq | GACGCCGGCCCAACAACTAGCAGCACGCAACAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATCGATTTGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGACAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGAAATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
More
|
|||||||
| Protein seq | DAGPTTSSTQQPSTASIWRAGWAPLGGGVRQVRHRGQQPGPSIWKAMPSKGSSQMTMTNQRNLSDRRAQQPLSQVYVDVDSEHGTAERQEIGTTKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEEIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0643100 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g44130 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0210800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027800 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027540 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027600 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027630 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007610 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0015100 | SBH | 0 | 0.0207445 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0034400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0007570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007620 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027280 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007600 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
