Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsMH63_07G0474900		OGI:07079520 \| 16/16			Minghui 63 \| MH63RS3 \| HZAU			Chr07:30340742-30345309		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		CIPK03, OsCIPK03, CIPK3, OsCIPK3, OsSnRK3.27, SnRK3.27
DNA seq		GAGAGAGGAGTCGTTTGCTGCAAAAACAAAACCAAACAAAACAGCTACGGGCCCCTGTCTCTTCCCCTGTCGTCTCCACCTCTCACTCTCTCCTCTCCACTGTTCCGGCCTCCTCTCCTCCATCCTCCCTCTCCCATTCTACCAGTTCTTCTGTTCTTGAATGCTCCGGACTCCATAGATCACCCTTCTTCTCCCAAAGGTATGTCCAGTTCTTCAGCATTAGTTCCTGTTCCTTCTACCTCTATTAGTTACGCCACTCGCCGGAGGAGAGGAATGCTGTTTCTCATTCCAGATGCAAGGGAATTCCATTTGGCTCCTGACTGCGATTAACTATGTCTCCAGCTGCTTGCATGTGCAGCATTCTTTCGGTATTTCGTTCCATTCTGTCAAGGAATACATGGAAAGATAAAAGGACTCGATTTTGACCTATTTCAAGGGTTCGAATATGGCTTGTTTTGATTGAACATGGCTCCGTGTTTTCTTCCTAATACATGAACAATGAACATGATGTTTTATTATTTGTTAGCTAGTGCCTTCAGATTTTGGTTTCTTTTTTTAAACCGGCGTCTACATCCTGAAATGGATGTACACAGCCAATACTTTGATTTCTTGTTTTGCTGGTTATATTAGGTCGATTCCATCAGCGTTTAATTTCTGCACTTCTGCAAATTTTTAGGAGATTCTAGGGACTAAAAGCTTGCACCTTGCAGATTAGCTTACAGTTAGATTTTTCTTTCATACTATTTGATACAATCTCAGTTGGAATTTTCATTTGCAATGAAATTTCGTATTTCTACTGCAATGGATTATTGTTATCTCCTTTTGATTAATAGCTTTCCATTCAGATTCAACATAATGCAATATCTTCTGTTTTTCTATGTGCTGACCATCAAATGGTCAAGCTTTATGAAAATAAATCTTGTAATATTCCCTGTCAGATTCAGTTGAAGTCTAGTTTGAAGGAATGATTTTTTTTTTTTGACTGAGGAAAGATTTTTTTTTCTGGAAGATGTATAAGGCTAAAAGGACTGCTGCCCAGAAAGTAAGGCGCTGCCTTGGAAAATATGAGCTTGGACGCGCAATTGGTCAAGGAACTTTTGCAAAGGTTAGGTTTGCAAAGAACATGGAGACTGGTGATCATGTTGCTATTAAGATCCTTGACAAAGCGAAGGTTCAGAAGCACAGATTAGTCGAACAGGTTATTTTCAGAGTCAGATAATTACTCACAATATTTTGTTCTACTTTCCTAGATTTTTCGCAACAACGAAAATAGCCAAAAGTATCTAGAAAAAAAATATTCCTGTGTACGCGCCAGCTGTGCTCATGCCACTCTAAAGTCTAAACTCTATTGCAGATTAGACGGGAAATTTGTACGATGAAGTTGATACAACACCCCAATGTTGTTCACCTGCATGAGGTAAATCTAAAGCATGAGAGACAAGAATATATCTTTCATTATTACCATGTTGCTAGTTTGAAACTTTGTGCAGTAGTACACCCAAGCCTTCTGTTTATGATAACTTGGATTACTTTTGTGGTGTTTTATAACAGGTGATGGGAAGTAAAACAAGGATTTTCATTGTTCTAGAATATGTGATGGGAGGAGAGCTCCATGATATTATTGTTAGTACTATTATACCTCTGAGGCTCTGATCCCCTGTATGACATTTTTCCATTGCAGTATCTGTAATTGAAGTAATCTCCACTTACTTTTTTTTTGCATGACAATTAAGTGAATTTCAATAACTTCATAAATTATAACCAGGCCACAAGTGGAAGGTTGAAGGAGGATGAAGCACGGAAATACTTTCAGCAACTGATCAACGCCGTAGATTACTGCCACAGTAGGGGTGTATACCACAGAGACCTGAAGGTCTAGTGTTAACCCCATTGCTCTGGTTTATAAGTTATAACTATGATCTGGCATAAACAATTGGAAATTGACAAATTGATGTTTTATGCATGACAGTTAGAGAATTTGTTGCTTGATACTGCCGGGAACATCAAAGTCTCGGACTTTGGCCTAAGTGCTATATCTGAGCAAGTGAAGGTAATATCACACAACTACTCGAAAGTTAAAAAAAAAAGGTTCCTGCACATCTATATTGTTTCTATGTCGATTGATTGCCTTTTTTACTGTGTGTGTGTGTCAATTAACTTCAACTCTGTCAGGCTGATGGATTACTACATACTACATGTGGAACACCTAATTATGTTGCTCCTGAGGTAACATTTGCTTGTACAACTTCTCTTATTTTTCTTTATCCAGAAATGAGTTTCTCCTATAATAAATATCTTTCTGTTTTGTAGGTTATTGAAGATAAGGGCTACGATGGTGCTCTTGCAGACCTTTGGTCATGTGGAGTAATTCTTTTTGTGCTGCTTGCAGGATATCTTCCTTTTGAGGATGAAAATATTGTCTCCCTTTATAACAAGGTAAATTTAGAAATTTAACCAAATCTTGAACACCAATATACCAGGTTATGATACATTTTTTTTTTGTCATTCCGATGACAGATTTCTGGAGCTCAGTTTACTTGTCCCTCTTGGTTTTCTGCTGAAGCTAAGAGGCTCATTGCTAGAATTCTGGATCCAAATCCTGCTACTGTAAGTTTTTTGACACTTACAAAATGTGGATAGAAGCTCTTACAGAAGTGACATTTTGAAGTTTGTTTAAACTTTAAATCTTTTATTTTTTATCACTGATTGTACTGACTAGATAAAGTTGCAATTTGGATCAGTAATCAGTGCCCAAAATTACTTGTTTCTTCTTACTTGGTTTTCTTTGTTGCCAACCAGCGGATAACTACTTCTCAAGTGCTACAAGATCAATGGTTCAAAAAAGGCTATGAGTCCCCTGTTTTCGATGACAAATATTACCCTTATTTCCACGATGTTTATGATGCTTTTGGAGACTCAGAAGTGAGTTAATTAATCAATAGTATTATATCTACAAGGGTACTTATCCTTTTGTGCTTCAGATGTTCATAATCTTAAATATACCGTCTAATAAATTTGCCAGGAAAAACATGTGAAAGAGGCTATGGAAGAGCAGCCAACCTTGATGAATGCCTTTGAGTTGATTTCACTAAATAAGGGTCTGAATCTAGACAATTTTTTTGAGTCTGATAAGGTAAGGATCTTTTCTGATTGCAGCAGTATGGTTAATGAGCCAGTGGGCAGTGGGATCAAATATGCACGTATCATAAACATTTTTCATAAATTACTTCAGAAACTATGCAATTATTGCAGTGGACTCACTTTTTTATTTAAACATGACAGAAGTACAAGAGAGAGACAAGATTTACATCGCAGTGCCCTCCGAAAGAAATCATCAATAGGATCGAAGAAGCTGCTAACTTACTAGGATTTAATATTCAGAAGAGAAACTACAGGGTATGCTAAGAATCCTTGCAAGTAATGTTTCTCTTACTAGTACCACTTTCAGCTCATTTGTACAAACTATGAAGAAGTTGAATATCACAATGTGAGATTACCTTTATCACCCCTGCGCTGCGTCCTGAACCATGACAAGCATCTCACTCGTTTTTTTCTACTGTTCTATTTAGATGAGAATGGAGAATATAAAGGAAGGAAGAAAAGGACATCTAAACATTGCAACTGAGGTATAGAAAACACAAAATTAAAGAAGATATCTGTCACAAGAAACATGAGGATTGATCAAAATATTATCCCGCTGTATAGGTTTTCCAAGTGGCACCATCCTTACATGTGGTTGAGCTCAAAAAGGCCAAGGGAGATACCCTGGAGTTTCAAAAGGTATATGTCTATCAATGGGGTTACTCTTATTATGGTCAATTGATCACCTTCAGTTTTGTTTAAATGACAAAGTAACTGAGCAAAATTATTACTATGAACAGTTCTACCAAACGCTCTCGACGCAACTAAAAGATGTTGTTTGGGAATTAGAAGATGCGGCTGAGGATATGAGCTAAGCGGAATGAGGTTTGCTGCAGAATAGATTTCAGAGTTTAGTGCTAGATTTCTCTGTACATATCAAAATTTCCGAGTTGCAGTAAATCCTTTTGTTACCCATGTATGGATAGATTCATATAAGTACCCAACAGGATTAGGCAACAGCAGGTCACGGCTTCACTGCTCACCATTTGATTTGTTCCTTTTAGAGCAGAAAATCTACTCAATTTTATCTTCCACAGATGTAGGTTGACATAGGATCAGTATAACCATGATCAGTGATATGCTCTGAATATTTCCACCATGTGTAATTTGTAGTATCGTTGTTTTTGGCACTGTAATAGTATACTACTGTATCAAAAAACATTGTGAAATGAAAGTATTGTATTGAGAGGGTTATTTAACAGGATCTTCTGGAATGGAATTGAAGGTAGATGAAATGCAGGCCAGAAGCGAGGAATTTTATGGTCCTTGAGAAAGTAGCTTGAGGTACCTAAATTTTTTAGTATCTTAAGATACTTAGTGCTTAGATGTACCAAATTTTATACTAGAAAATATATAGATACCTTCTAAAGGATAGTAAAATTATCCCCAAAAGCAAAGGATGGATGGTGGGCGCTTGCATCGAGAAC More
CDS seq		ATGTATAAGGCTAAAAGGACTGCTGCCCAGAAAGTAAGGCGCTGCCTTGGAAAATATGAGCTTGGACGCGCAATTGGTCAAGGAACTTTTGCAAAGGTTAGGTTTGCAAAGAACATGGAGACTGGTGATCATGTTGCTATTAAGATCCTTGACAAAGCGAAGGTTCAGAAGCACAGATTAGTCGAACAGATTAGACGGGAAATTTGTACGATGAAGTTGATACAACACCCCAATGTTGTTCACCTGCATGAGGTGATGGGAAGTAAAACAAGGATTTTCATTGTTCTAGAATATGTGATGGGAGGAGAGCTCCATGATATTATTGCCACAAGTGGAAGGTTGAAGGAGGATGAAGCACGGAAATACTTTCAGCAACTGATCAACGCCGTAGATTACTGCCACAGTAGGGGTGTATACCACAGAGACCTGAAGTTAGAGAATTTGTTGCTTGATACTGCCGGGAACATCAAAGTCTCGGACTTTGGCCTAAGTGCTATATCTGAGCAAGTGAAGGCTGATGGATTACTACATACTACATGTGGAACACCTAATTATGTTGCTCCTGAGGTTATTGAAGATAAGGGCTACGATGGTGCTCTTGCAGACCTTTGGTCATGTGGAGTAATTCTTTTTGTGCTGCTTGCAGGATATCTTCCTTTTGAGGATGAAAATATTGTCTCCCTTTATAACAAGATTTCTGGAGCTCAGTTTACTTGTCCCTCTTGGTTTTCTGCTGAAGCTAAGAGGCTCATTGCTAGAATTCTGGATCCAAATCCTGCTACTCGGATAACTACTTCTCAAGTGCTACAAGATCAATGGTTCAAAAAAGGCTATGAGTCCCCTGTTTTCGATGACAAATATTACCCTTATTTCCACGATGTTTATGATGCTTTTGGAGACTCAGAAGAAAAACATGTGAAAGAGGCTATGGAAGAGCAGCCAACCTTGATGAATGCCTTTGAGTTGATTTCACTAAATAAGGGTCTGAATCTAGACAATTTTTTTGAGTCTGATAAGAAGTACAAGAGAGAGACAAGATTTACATCGCAGTGCCCTCCGAAAGAAATCATCAATAGGATCGAAGAAGCTGCTAACTTACTAGGATTTAATATTCAGAAGAGAAACTACAGGATGAGAATGGAGAATATAAAGGAAGGAAGAAAAGGACATCTAAACATTGCAACTGAGGTTTTCCAAGTGGCACCATCCTTACATGTGGTTGAGCTCAAAAAGGCCAAGGGAGATACCCTGGAGTTTCAAAAGTTCTACCAAACGCTCTCGACGCAACTAAAAGATGTTGTTTGGGAATTAGAAGATGCGGCTGAGGATATGAGCTAA More
Protein seq		MYKAKRTAAQKVRRCLGKYELGRAIGQGTFAKVRFAKNMETGDHVAIKILDKAKVQKHRLVEQIRREICTMKLIQHPNVVHLHEVMGSKTRIFIVLEYVMGGELHDIIATSGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKLENLLLDTAGNIKVSDFGLSAISEQVKADGLLHTTCGTPNYVAPEVIEDKGYDGALADLWSCGVILFVLLAGYLPFEDENIVSLYNKISGAQFTCPSWFSAEAKRLIARILDPNPATRITTSQVLQDQWFKKGYESPVFDDKYYPYFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFELISLNKGLNLDNFFESDKKYKRETRFTSQCPPKEIINRIEEAANLLGFNIQKRNYRMRMENIKEGRKGHLNIATEVFQVAPSLHVVELKKAKGDTLEFQKFYQTLSTQLKDVVWELEDAAEDMS
Function		CBL-interacting protein kinase 3 [UniProtKB/Swiss-Prot:Q8LIG4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_07G0474900	OsMH63_07T0474900.1	Chr07	30340742	30345309	+	maker
CDS seq	ATGTATAAGGCTAAAAGGACTGCTGCCCAGAAAGTAAGGCGCTGCCTTGGAAAATATGAGCTTGGACGCGCAATTGGTCAAGGAACTTTTGCAAAGGTTAGGTTTGCAAAGAACATGGAGACTGGTGATCATGTTGCTATTAAGATCCTTGACAAAGCGAAGGTTCAGAAGCACAGATTAGTCGAACAGATTAGACGGGAAATTTGTACGATGAAGTTGATACAACACCCCAATGTTGTTCACCTGCATGAGGTGATGGGAAGTAAAACAAGGATTTTCATTGTTCTAGAATATGTGATGGGAGGAGAGCTCCATGATATTATTGCCACAAGTGGAAGGTTGAAGGAGGATGAAGCACGGAAATACTTTCAGCAACTGATCAACGCCGTAGATTACTGCCACAGTAGGGGTGTATACCACAGAGACCTGAAGTTAGAGAATTTGTTGCTTGATACTGCCGGGAACATCAAAGTCTCGGACTTTGGCCTAAGTGCTATATCTGAGCAAGTGAAGGCTGATGGATTACTACATACTACATGTGGAACACCTAATTATGTTGCTCCTGAGGTTATTGAAGATAAGGGCTACGATGGTGCTCTTGCAGACCTTTGGTCATGTGGAGTAATTCTTTTTGTGCTGCTTGCAGGATATCTTCCTTTTGAGGATGAAAATATTGTCTCCCTTTATAACAAGATTTCTGGAGCTCAGTTTACTTGTCCCTCTTGGTTTTCTGCTGAAGCTAAGAGGCTCATTGCTAGAATTCTGGATCCAAATCCTGCTACTCGGATAACTACTTCTCAAGTGCTACAAGATCAATGGTTCAAAAAAGGCTATGAGTCCCCTGTTTTCGATGACAAATATTACCCTTATTTCCACGATGTTTATGATGCTTTTGGAGACTCAGAAGAAAAACATGTGAAAGAGGCTATGGAAGAGCAGCCAACCTTGATGAATGCCTTTGAGTTGATTTCACTAAATAAGGGTCTGAATCTAGACAATTTTTTTGAGTCTGATAAGAAGTACAAGAGAGAGACAAGATTTACATCGCAGTGCCCTCCGAAAGAAATCATCAATAGGATCGAAGAAGCTGCTAACTTACTAGGATTTAATATTCAGAAGAGAAACTACAGGATGAGAATGGAGAATATAAAGGAAGGAAGAAAAGGACATCTAAACATTGCAACTGAGGTTTTCCAAGTGGCACCATCCTTACATGTGGTTGAGCTCAAAAAGGCCAAGGGAGATACCCTGGAGTTTCAAAAGTTCTACCAAACGCTCTCGACGCAACTAAAAGATGTTGTTTGGGAATTAGAAGATGCGGCTGAGGATATGAGCTAA More
Protein seq	MYKAKRTAAQKVRRCLGKYELGRAIGQGTFAKVRFAKNMETGDHVAIKILDKAKVQKHRLVEQIRREICTMKLIQHPNVVHLHEVMGSKTRIFIVLEYVMGGELHDIIATSGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKLENLLLDTAGNIKVSDFGLSAISEQVKADGLLHTTCGTPNYVAPEVIEDKGYDGALADLWSCGVILFVLLAGYLPFEDENIVSLYNKISGAQFTCPSWFSAEAKRLIARILDPNPATRITTSQVLQDQWFKKGYESPVFDDKYYPYFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFELISLNKGLNLDNFFESDKKYKRETRFTSQCPPKEIINRIEEAANLLGFNIQKRNYRMRMENIKEGRKGHLNIATEVFQVAPSLHVVELKKAKGDTLEFQKFYQTLSTQLKDVVWELEDAAEDMS More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsMH63_07G0474900	OsMH63_07T0474900.2	Chr07	30340742	30345309	+	maker
CDS seq	ATGTATAAGGCTAAAAGGACTGCTGCCCAGAAAGTAAGGCGCTGCCTTGGAAAATATGAGCTTGGACGCGCAATTGGTCAAGGAACTTTTGCAAAGGTTAGGTTTGCAAAGAACATGGAGACTGGTGATCATGTTGCTATTAAGATCCTTGACAAAGCGAAGGTTCAGAAGCACAGATTAGTCGAACAGATTAGACGGGAAATTTGTACGATGAAGTTGATACAACACCCCAATGTTGTTCACCTGCATGAGGTGATGGGAAGTAAAACAAGGATTTTCATTGTTCTAGAATATGTGATGGGAGGAGAGCTCCATGATATTATTGCCACAAGTGGAAGGTTGAAGGAGGATGAAGCACGGAAATACTTTCAGCAACTGATCAACGCCGTAGATTACTGCCACAGTAGGGGTGTATACCACAGAGACCTGAAGTTAGAGAATTTGTTGCTTGATACTGCCGGGAACATCAAAGTCTCGGACTTTGGCCTAAGTGCTATATCTGAGCAAGTGAAGGCTGATGGATTACTACATACTACATGTGGAACACCTAATTATGTTGCTCCTGAGGTTATTGAAGATAAGGGCTACGATGGTGCTCTTGCAGACCTTTGGTCATGTGGAGTAATTCTTTTTGTGCTGCTTGCAGGATATCTTCCTTTTGAGGATGAAAATATTGTCTCCCTTTATAACAAGATTTCTGGAGCTCAGTTTACTTGTCCCTCTTGGTTTTCTGCTGAAGCTAAGAGGCTCATTGCTAGAATTCTGGATCCAAATCCTGCTACTCGGATAACTACTTCTCAAGTGCTACAAGATCAATGGTTCAAAAAAGGCTATGAGTCCCCTGTTTTCGATGACAAATATTACCCTTATTTCCACGATGTTTATGATGCTTTTGGAGACTCAGAAGAAAAACATGTGAAAGAGGCTATGGAAGAGCAGCCAACCTTGATGAATGCCTTTGAGTTGATTTCACTAAATAAGGGTCTGAATCTAGACAATTTTTTTGAGTCTGATAAGAAGTACAAGAGAGAGACAAGATTTACATCGCAGTGCCCTCCGAAAGAAATCATCAATAGGATCGAAGAAGCTGCTAACTTACTAGGATTTAATATTCAGAAGAGAAACTACAGGATGAGAATGGAGAATATAAAGGAAGGAAGAAAAGGACATCTAAACATTGCAACTGAGGTATAG More
Protein seq	MYKAKRTAAQKVRRCLGKYELGRAIGQGTFAKVRFAKNMETGDHVAIKILDKAKVQKHRLVEQIRREICTMKLIQHPNVVHLHEVMGSKTRIFIVLEYVMGGELHDIIATSGRLKEDEARKYFQQLINAVDYCHSRGVYHRDLKLENLLLDTAGNIKVSDFGLSAISEQVKADGLLHTTCGTPNYVAPEVIEDKGYDGALADLWSCGVILFVLLAGYLPFEDENIVSLYNKISGAQFTCPSWFSAEAKRLIARILDPNPATRITTSQVLQDQWFKKGYESPVFDDKYYPYFHDVYDAFGDSEEKHVKEAMEEQPTLMNAFELISLNKGLNLDNFFESDKKYKRETRFTSQCPPKEIINRIEEAANLLGFNIQKRNYRMRMENIKEGRKGHLNIATEV More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.344433	1.0609415	0.825963

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0687000	RBH	0.000000	0.0	0.000000
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g48760	RBH	0.000000	0.090830	0.000000
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0687000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0028270	RBH	0.0	2.665581	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0028310	RBH	0.000000	0.000000	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0028110	RBH	0.0	2.130435	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0027920	RBH	0.000000	0.153360	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0028200	RBH	0.000000	7.132965	0.000000
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_03G0191200	RBH	22.5667955	2.2451185	22.3552645
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0028650	RBH	0.0	0.128722	0.045513
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0488900	RBH	0.773341	3.5697865	5.567194
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0027910	RBH	0.0	0.000000	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0028390	RBH	0.0	4.263675	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0028090	RBH	0.0	6.243912	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0028420	RBH	0.0	0.000000	0.000000
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0027990	RBH	0.0	2.140919	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G028050	RBH	0.0	1.596246	0.000000
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0027820	RBH	0.0	0.000000	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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