Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0470700 | OGI:06083890 | 3/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:30776365-30777672 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTACTCTCTATCTTTGATGATCGGAATTGTTCCTCTTAGCTTGCGGCACTGCCTTTTGAGCTCCTCGTTCTCACAACGACAGACATCTAGTTCTTGCAATGAACTCGGAAGGCCACCCTTGGGCGGTGAACAGATGGCTGGACACCAGTCGATCTCTAATATCTTGAGGCCGACGAGTCTGTGTAACCCAGTGGGGAGGGACTGCAGCTTCCAGCAGGAGTAAAACTCGAGGTCCTGGAGGGAGGAGAGGAGCAGAAGGGCCTCACTCTGCTCCTTGGTGATGCGCTCCACCTCATGATTAAAACCAATGGTTAGCTTGGTGAGTGATGAAGAAATGAGGCTGCAGATTGGTGGTGCAAGGACCCTTGCAATGTCATCCGTTTGAAGCTGCTGCAGCCGCGAGGGGTCAGACCTGACGAAGAATTTGGGGGTCATTTGGATGCGAAGGTCTGTGAGTTGGCCATGGTCGAGCAGAGAAGACAAGCCCTCACCACTTAAGTCCATACATTTCCATATGGTTAATCTGGTGAGAGAGCTGAGGTTTGAGAGGGGAGCAAGAGTCTCCATGCCTCTCACATCACTCAGATACATCTTTTGAAGGGAGGATGGAAACGGGAAACAAGACAAGGAGGTCGAGTAGTAGGAGGAGAGGAAATTGGGGCAACCCCAAATAGAGAATGCTCGTAGGGAGTGCAGGCCTTGTAATCCTCCTCCTATGCCTCTTAAGCCTCCTTCCATGCCATCTACAAGAGAATGGATCTGCAGGATCAGCTCTGGGATTTCGCTGATGTTCAACTCCTGAAGTTGGTGAGGCAAGAGCAATAGTCCTGCTTCAGCTGACACTTTCTCATCCTCTCCTCTTGGTTGTTGCTGCTCCAGTCCGAAACGAGCATCCTCCAACTTATTACCACAAGGTGATGATGACGATGCCAACATTGTTGTCATCTGCTTCCCCAGCACACCAAGCCCTCTTATCTTATTACATCTCCTTGAAATAAACATGGAGAGTTTGGGGAAATGAGATAGAAACAACGTCAATTCCTTCCCGCTACAACCACACTCAAAGATCTCCAATTTCTCGATTGGAAACTGGTAGCTGACAGTGTTCTCAGATTCAAGATGTGACATGACATTGCTTGAGTCAGATATAGTGAGTCTCCTCAAACATGATAGCATTAGGAGGTATTCCAGCGGCAAAGGAGGGCATTTCTTCAAATCCAACTCTTTCAGATCAGTTAGATTACCGAAAACCAATCTCCTCCAGAATGCACCATCTAGATGTTCATCCTTTCCCTTGACTAGCAT
More
|
||||||||||
| CDS seq | ATGCTAGTCAAGGGAAAGGATGAACATCTAGATGGTGCATTCTGGAGGAGATTGGTTTTCGGTAATCTAACTGATCTGAAAGAGTTGGATTTGAAGAAATGCCCTCCTTTGCCGCTGGAATACCTCCTAATGCTATCATGTTTGAGGAGACTCACTATATCTGACTCAAGCAATGTCATGTCACATCTTGAATCTGAGAACACTGTCAGCTACCAGTTTCCAATCGAGAAATTGGAGATCTTTGAGTGTGGTTGTAGCGGGAAGGAATTGACGTTGTTTCTATCTCATTTCCCCAAACTCTCCATGTTTATTTCAAGGAGATGTAATAAGATAAGAGGGCTTGGTGTGCTGGGGAAGCAGATGACAACAATGTTGGCATCGTCATCATCACCTTGTGGTAATAAGTTGGAGGATGCTCGTTTCGGACTGGAGCAGCAACAACCAAGAGGAGAGGATGAGAAAGTGTCAGCTGAAGCAGGACTATTGCTCTTGCCTCACCAACTTCAGGAGTTGAACATCAGCGAAATCCCAGAGCTGATCCTGCAGATCCATTCTCTTGTAGATGGCATGGAAGGAGGCTTAAGAGGCATAGGAGGAGGATTACAAGGCCTGCACTCCCTACGAGCATTCTCTATTTGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGACCTCCTTGTCTTGTTTCCCGTTTCCATCCTCCCTTCAAAAGATGTATCTGAGTGATGTGAGAGGCATGGAGACTCTTGCTCCCCTCTCAAACCTCAGCTCTCTCACCAGATTAACCATATGGAAATGTATGGACTTAAGTGGTGAGGGCTTGTCTTCTCTGCTCGACCATGGCCAACTCACAGACCTTCGCATCCAAATGACCCCCAAATTCTTCGTCAGGTCTGACCCCTCGCGGCTGCAGCAGCTTCAAACGGATGACATTGCAAGGGTCCTTGCACCACCAATCTGCAGCCTCATTTCTTCATCACTCACCAAGCTAACCATTGGTTTTAATCATGAGGTGGAGCGCATCACCAAGGAGCAGAGTGAGGCCCTTCTGCTCCTCTCCTCCCTCCAGGACCTCGAGTTTTACTCCTGCTGGAAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCGTCGGCCTCAAGATATTAGAGATCGACTGGTGTCCAGCCATCTGTTCACCGCCCAAGGGTGGCCTTCCGAGTTCATTGCAAGAACTAGATGTCTGTCGTTGTGAGAACGAGGAGCTCAAAAGGCAGTGCCGCAAGCTAAGAGGAACAATTCCGATCATCAAAGATAGAGAGTACTAA
More
|
||||||||||
| Protein seq | MLVKGKDEHLDGAFWRRLVFGNLTDLKELDLKKCPPLPLEYLLMLSCLRRLTISDSSNVMSHLESENTVSYQFPIEKLEIFECGCSGKELTLFLSHFPKLSMFISRRCNKIRGLGVLGKQMTTMLASSSSPCGNKLEDARFGLEQQQPRGEDEKVSAEAGLLLLPHQLQELNISEIPELILQIHSLVDGMEGGLRGIGGGLQGLHSLRAFSIWGCPNFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMETLAPLSNLSSLTRLTIWKCMDLSGEGLSSLLDHGQLTDLRIQMTPKFFVRSDPSRLQQLQTDDIARVLAPPICSLISSSLTKLTIGFNHEVERITKEQSEALLLLSSLQDLEFYSCWKLQSLPTGLHRLVGLKILEIDWCPAICSPPKGGLPSSLQELDVCRCENEELKRQCRKLRGTIPIIKDREY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0470700 | OsMH63_06T0470700.1 | Chr06 | 30776365 | 30777672 | - | maker | ||
| CDS seq | ATGCTAGTCAAGGGAAAGGATGAACATCTAGATGGTGCATTCTGGAGGAGATTGGTTTTCGGTAATCTAACTGATCTGAAAGAGTTGGATTTGAAGAAATGCCCTCCTTTGCCGCTGGAATACCTCCTAATGCTATCATGTTTGAGGAGACTCACTATATCTGACTCAAGCAATGTCATGTCACATCTTGAATCTGAGAACACTGTCAGCTACCAGTTTCCAATCGAGAAATTGGAGATCTTTGAGTGTGGTTGTAGCGGGAAGGAATTGACGTTGTTTCTATCTCATTTCCCCAAACTCTCCATGTTTATTTCAAGGAGATGTAATAAGATAAGAGGGCTTGGTGTGCTGGGGAAGCAGATGACAACAATGTTGGCATCGTCATCATCACCTTGTGGTAATAAGTTGGAGGATGCTCGTTTCGGACTGGAGCAGCAACAACCAAGAGGAGAGGATGAGAAAGTGTCAGCTGAAGCAGGACTATTGCTCTTGCCTCACCAACTTCAGGAGTTGAACATCAGCGAAATCCCAGAGCTGATCCTGCAGATCCATTCTCTTGTAGATGGCATGGAAGGAGGCTTAAGAGGCATAGGAGGAGGATTACAAGGCCTGCACTCCCTACGAGCATTCTCTATTTGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGACCTCCTTGTCTTGTTTCCCGTTTCCATCCTCCCTTCAAAAGATGTATCTGAGTGATGTGAGAGGCATGGAGACTCTTGCTCCCCTCTCAAACCTCAGCTCTCTCACCAGATTAACCATATGGAAATGTATGGACTTAAGTGGTGAGGGCTTGTCTTCTCTGCTCGACCATGGCCAACTCACAGACCTTCGCATCCAAATGACCCCCAAATTCTTCGTCAGGTCTGACCCCTCGCGGCTGCAGCAGCTTCAAACGGATGACATTGCAAGGGTCCTTGCACCACCAATCTGCAGCCTCATTTCTTCATCACTCACCAAGCTAACCATTGGTTTTAATCATGAGGTGGAGCGCATCACCAAGGAGCAGAGTGAGGCCCTTCTGCTCCTCTCCTCCCTCCAGGACCTCGAGTTTTACTCCTGCTGGAAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCGTCGGCCTCAAGATATTAGAGATCGACTGGTGTCCAGCCATCTGTTCACCGCCCAAGGGTGGCCTTCCGAGTTCATTGCAAGAACTAGATGTCTGTCGTTGTGAGAACGAGGAGCTCAAAAGGCAGTGCCGCAAGCTAAGAGGAACAATTCCGATCATCAAAGATAGAGAGTACTAA
More
|
|||||||
| Protein seq | MLVKGKDEHLDGAFWRRLVFGNLTDLKELDLKKCPPLPLEYLLMLSCLRRLTISDSSNVMSHLESENTVSYQFPIEKLEIFECGCSGKELTLFLSHFPKLSMFISRRCNKIRGLGVLGKQMTTMLASSSSPCGNKLEDARFGLEQQQPRGEDEKVSAEAGLLLLPHQLQELNISEIPELILQIHSLVDGMEGGLRGIGGGLQGLHSLRAFSIWGCPNFLSSYYSTSLSCFPFPSSLQKMYLSDVRGMETLAPLSNLSSLTRLTIWKCMDLSGEGLSSLLDHGQLTDLRIQMTPKFFVRSDPSRLQQLQTDDIARVLAPPICSLISSSLTKLTIGFNHEVERITKEQSEALLLLSSLQDLEFYSCWKLQSLPTGLHRLVGLKILEIDWCPAICSPPKGGLPSSLQELDVCRCENEELKRQCRKLRGTIPIIKDREY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.3312995 | 0.7740715 | 1.201714 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0707350 | SBH | 0.266824 | 0.0 | 0.163038 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49380 | RBH | 0.054588 | 0.153253 | 0.421167 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0707350 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028560 | RBH | 0.0 | 3.003087 | 0.779685 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028380 | SBH | 0.0 | 1.110955 | 0.291390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028520 | SBH | 0.0 | 0.0 | 0.410222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028110 | SBH | 0.0 | 0.038639 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028610 | SBH | 0.648563 | 2.141125 | 0.771367 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0470400 | RBH | 0.2663465 | 0.262515 | 0.40943 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027970 | SBH | 0.020327 | 0.197924 | 0.188771 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0454000 | RBH | 0.2490045 | 0.447596 | 1.328667 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028510 | RBH | 0.0 | 0.094116 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028580 | SBH | 0.097557 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028150 | SBH | 0.0 | 2.933720 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028810 | SBH | 0.057146 | 0.088962 | 0.035567 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028440 | RBH | 0.036604 | 0.309617 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028310 | SBH | 0.066538 | 0.405067 | 0.188567 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028420 | SBH | 0.000000 | 2.451127 | 1.274637 |
