Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_06g0707350 | OGI:06083810 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr06:29897280-29899109 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGTAGTATCGTCTGTCTTTGATGATCGGAATGGTTCCTCTCAGGTCGCGGCACTGCCTTTTGAGCTCCTCGTTGTTGCTAGAACGGACATCTAGTACTTCCAGTGAACTCGGAAGGCCGCCCTTGGGCAGCGAACGGATGGCTGGACAGGACCAGATCTTTAATCTCTTGAGGCTGGTGAGTCTGTGTAACCCAGTGGGGAGGGACTGCAGCTCCGAGCAGTACCAAAATTCAAGGTCCTGGAGGGAGGAGAGGAGCAGAAGTGCCGCGCTTTGCTCCTTTGTGAAGCGCTCCACCTCGTCGTTCCAACTAATGGTTAGGCTGGTGAGTGAGGAAGCAAGGAGGCTGCAGATGGGCGCGGCAAGGACCTTTGTGATGTCATCTGTTTGGAGGCACTGCAGCCGCAAGGAGTCAGAGCCACACCCGACGAAGAATTTGGGGGTCTCGAAGATGTTCAGGTTTGTGAGTTGGCCATGGGCGAGGAGAGAAGACAAGTCCTCACCTCTTAAATCCATACATTTCCGTATGGTTAATCTGGTGAGAGAGCTGAGGTTTGAGAGAGGCGCCAGAGTCTCCATGCCTCCCACACCATCAAGATGCAGATATTGCAGGGAGGATGGAAATGGGAAGCAAGACGAGGAGGAGGACGAGTAGTAGGAGGAGAGGAAATTGGGGCAACCCCGAATAGTGAGTGTTCTTAGGAAGTGCAGGCCTTGTAATCCTCCTCCTATGCTTCTTAAGCCTCCTGCCATGCCATCTACGAGAGAATCAAACTGCAGGATCAGCTTTGAGATATTCTCTATGTACAAATCCTGAAGTTGGTGAGGCAAGAGCAGCAGTCCTGCATCAGCTGCTGCTTTCTCATCCTCTCCTCTTAGTTGCTCCTGCTCCTGCTCCTGTCCTATATGTGCATCCTCCAACTTATGACCAGAAGGTGACGACGACAATGCTGACATTGCCATTGTCTGCTCCTTCGCCACACCAAGCACTCTTATCTTCCCACAACCTTGTAATGAAAACATTGACAGCTTGGGGAAAAGAGACAGCAACAGCGTCAGTTCCTTCCCGCTACAGCTACAGTCATCGATACTGAGACCCTCAATCTGAAATTGGTAGCCGACAGTGTTCTCAGCTTCAACATTCAACAAGACATTACTTGAATCATGTATCGTGGGACTCCTCAAACATGATAGCACTAGGAGATGTTTCAGTGGCAAAGGAGGACATTTCTTCAAATACAACACTTTCAGTTCAGTTAGATTACTAAATGCCAATACATTCCAGAATGACATATCTAGATGGCCATCCTTTCCCACAACTTTCAAGCAAAATTCAGATTGGTTATTTTTTGAGTAATCCAACCGCTGAAAATCTGATCCCACTTCATCAATAAGAACACGACATGGAGAGCTTGTCCAAGGAATGTGAGGAAATGATGACAGCTTTGGACAATTTACAACCTCAAGCTCCCTTAGTGTAGGGAATTGGGTCAAGTTCATCTCCTGTCCTGATCGAGGGCAAGTTGAATGTGAAAATGGCAACTCCATAAGTTCTGGGCAATCTCTTATAATGAACACCTCTAGCAGGGAGAACACATGGGAAGCATCATTTCCAACCCATTTTGCTAGCTGTGGTATGCCAAGCAGCTCTAACCTTTTTAATTTTTGAAAGCTCTGACTTGTTGTACAACCCAAGGATTCTTCACCGGACGCATTAACCAACCACAACTCACCTAGAGGGGGAAATTTGTTCCACTGTATGCTATCCAAACGAAGAGCTTGCAAGTTTTTGGTAGACAAGTTAACACCCAACCATGATGGGCAAGATTG
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| CDS seq | CAATCTTGCCCATCATGGTTGGGTGTTAACTTGTCTACCAAAAACTTGCAAGCTCTTCGTTTGGATAGCATACAGTGGAACAAATTTCCCCCTCTAGGTGAGTTGTGGTTGGTTAATGCGTCCGGTGAAGAATCCTTGGGTTGTACAACAAGTCAGAGCTTTCAAAAATTAAAAAGGTTAGAGCTGCTTGGCATACCACAGCTAGCAAAATGGGTTGGAAATGATGCTTCCCATGTGTTCTCCCTGCTAGAGGTGTTCATTATAAGAGATTGCCCAGAACTTATGGAGTTGCCATTTTCACATTCAACTTGCCCTCGATCAGGACAGGAGATGAACTTGACCCAATTCCCTACACTAAGGGAGCTTGAGGTTGTAAATTGTCCAAAGCTGTCATCATTTCCTCACATTCCTTGGACAAGCTCTCCATGTCGTGTTCTTATTGATGAAGTGGGATCAGATTTTCAGCGGTTGGATTACTCAAAAAATAACCAATCTGAATTTTGCTTGAAAGTTGTGGGAAAGGATGGCCATCTAGATATGTCATTCTGGAATGTATTGGCATTTAGTAATCTAACTGAACTGAAAGTGTTGTATTTGAAGAAATGTCCTCCTTTGCCACTGAAACATCTCCTAGTGCTATCATGTTTGAGGAGTCCCACGATACATGATTCAAGTAATGTCTTGTTGAATGTTGAAGCTGAGAACACTGTCGGCTACCAATTTCAGATTGAGGGTCTCAGTATCGATGACTGTAGCTGTAGCGGGAAGGAACTGACGCTGTTGCTGTCTCTTTTCCCCAAGCTGTCAATGTTTTCATTACAAGGTTGTGGGAAGATAAGAGTGCTTGGTGTGGCGAAGGAGCAGACAATGGCAATGTCAGCATTGTCGTCGTCACCTTCTGGTCATAAGTTGGAGGATGCACATATAGGACAGGAGCAGGAGCAGGAGCAACTAAGAGGAGAGGATGAGAAAGCAGCAGCTGATGCAGGACTGCTGCTCTTGCCTCACCAACTTCAGGATTTGTACATAGAGAATATCTCAAAGCTGATCCTGCAGTTTGATTCTCTCGTAGATGGCATGGCAGGAGGCTTAAGAAGCATAGGAGGAGGATTACAAGGCCTGCACTTCCTAAGAACACTCACTATTCGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGTCCTCCTCCTCGTCTTGCTTCCCATTTCCATCCTCCCTGCAATATCTGCATCTTGATGGTGTGGGAGGCATGGAGACTCTGGCGCCTCTCTCAAACCTCAGCTCTCTCACCAGATTAACCATACGGAAATGTATGGATTTAAGAGGTGAGGACTTGTCTTCTCTCCTCGCCCATGGCCAACTCACAAACCTGAACATCTTCGAGACCCCCAAATTCTTCGTCGGGTGTGGCTCTGACTCCTTGCGGCTGCAGTGCCTCCAAACAGATGACATCACAAAGGTCCTTGCCGCGCCCATCTGCAGCCTCCTTGCTTCCTCACTCACCAGCCTAACCATTAGTTGGAACGACGAGGTGGAGCGCTTCACAAAGGAGCAAAGCGCGGCACTTCTGCTCCTCTCCTCCCTCCAGGACCTTGAATTTTGGTACTGCTCGGAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCACCAGCCTCAAGAGATTAAAGATCTGGTCCTGTCCAGCCATCCGTTCGCTGCCCAAGGGCGGCCTTCCGAGTTCACTGGAAGTACTAGATGTCCGTTCTAGCAACAACGAGGAGCTCAAAAGGCAGTGCCGCGACCTGAGAGGAACCATTCCGATCATCAAAGACAGACGATACTACTAA
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| Protein seq | QSCPSWLGVNLSTKNLQALRLDSIQWNKFPPLGELWLVNASGEESLGCTTSQSFQKLKRLELLGIPQLAKWVGNDASHVFSLLEVFIIRDCPELMELPFSHSTCPRSGQEMNLTQFPTLRELEVVNCPKLSSFPHIPWTSSPCRVLIDEVGSDFQRLDYSKNNQSEFCLKVVGKDGHLDMSFWNVLAFSNLTELKVLYLKKCPPLPLKHLLVLSCLRSPTIHDSSNVLLNVEAENTVGYQFQIEGLSIDDCSCSGKELTLLLSLFPKLSMFSLQGCGKIRVLGVAKEQTMAMSALSSSPSGHKLEDAHIGQEQEQEQLRGEDEKAAADAGLLLLPHQLQDLYIENISKLILQFDSLVDGMAGGLRSIGGGLQGLHFLRTLTIRGCPNFLSSYYSSSSSSCFPFPSSLQYLHLDGVGGMETLAPLSNLSSLTRLTIRKCMDLRGEDLSSLLAHGQLTNLNIFETPKFFVGCGSDSLRLQCLQTDDITKVLAAPICSLLASSLTSLTISWNDEVERFTKEQSAALLLLSSLQDLEFWYCSELQSLPTGLHRLTSLKRLKIWSCPAIRSLPKGGLPSSLEVLDVRSSNNEELKRQCRDLRGTIPIIKDRRYY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_06g0707350 | OsNip_06t0707350-00 | Chr06 | 29897280 | 29899109 | - | RAP2018-11-26 | ||
| CDS seq | CAATCTTGCCCATCATGGTTGGGTGTTAACTTGTCTACCAAAAACTTGCAAGCTCTTCGTTTGGATAGCATACAGTGGAACAAATTTCCCCCTCTAGGTGAGTTGTGGTTGGTTAATGCGTCCGGTGAAGAATCCTTGGGTTGTACAACAAGTCAGAGCTTTCAAAAATTAAAAAGGTTAGAGCTGCTTGGCATACCACAGCTAGCAAAATGGGTTGGAAATGATGCTTCCCATGTGTTCTCCCTGCTAGAGGTGTTCATTATAAGAGATTGCCCAGAACTTATGGAGTTGCCATTTTCACATTCAACTTGCCCTCGATCAGGACAGGAGATGAACTTGACCCAATTCCCTACACTAAGGGAGCTTGAGGTTGTAAATTGTCCAAAGCTGTCATCATTTCCTCACATTCCTTGGACAAGCTCTCCATGTCGTGTTCTTATTGATGAAGTGGGATCAGATTTTCAGCGGTTGGATTACTCAAAAAATAACCAATCTGAATTTTGCTTGAAAGTTGTGGGAAAGGATGGCCATCTAGATATGTCATTCTGGAATGTATTGGCATTTAGTAATCTAACTGAACTGAAAGTGTTGTATTTGAAGAAATGTCCTCCTTTGCCACTGAAACATCTCCTAGTGCTATCATGTTTGAGGAGTCCCACGATACATGATTCAAGTAATGTCTTGTTGAATGTTGAAGCTGAGAACACTGTCGGCTACCAATTTCAGATTGAGGGTCTCAGTATCGATGACTGTAGCTGTAGCGGGAAGGAACTGACGCTGTTGCTGTCTCTTTTCCCCAAGCTGTCAATGTTTTCATTACAAGGTTGTGGGAAGATAAGAGTGCTTGGTGTGGCGAAGGAGCAGACAATGGCAATGTCAGCATTGTCGTCGTCACCTTCTGGTCATAAGTTGGAGGATGCACATATAGGACAGGAGCAGGAGCAGGAGCAACTAAGAGGAGAGGATGAGAAAGCAGCAGCTGATGCAGGACTGCTGCTCTTGCCTCACCAACTTCAGGATTTGTACATAGAGAATATCTCAAAGCTGATCCTGCAGTTTGATTCTCTCGTAGATGGCATGGCAGGAGGCTTAAGAAGCATAGGAGGAGGATTACAAGGCCTGCACTTCCTAAGAACACTCACTATTCGGGGTTGCCCCAATTTCCTCTCCTCCTACTACTCGTCCTCCTCCTCGTCTTGCTTCCCATTTCCATCCTCCCTGCAATATCTGCATCTTGATGGTGTGGGAGGCATGGAGACTCTGGCGCCTCTCTCAAACCTCAGCTCTCTCACCAGATTAACCATACGGAAATGTATGGATTTAAGAGGTGAGGACTTGTCTTCTCTCCTCGCCCATGGCCAACTCACAAACCTGAACATCTTCGAGACCCCCAAATTCTTCGTCGGGTGTGGCTCTGACTCCTTGCGGCTGCAGTGCCTCCAAACAGATGACATCACAAAGGTCCTTGCCGCGCCCATCTGCAGCCTCCTTGCTTCCTCACTCACCAGCCTAACCATTAGTTGGAACGACGAGGTGGAGCGCTTCACAAAGGAGCAAAGCGCGGCACTTCTGCTCCTCTCCTCCCTCCAGGACCTTGAATTTTGGTACTGCTCGGAGCTGCAGTCCCTCCCCACTGGGTTACACAGACTCACCAGCCTCAAGAGATTAAAGATCTGGTCCTGTCCAGCCATCCGTTCGCTGCCCAAGGGCGGCCTTCCGAGTTCACTGGAAGTACTAGATGTCCGTTCTAGCAACAACGAGGAGCTCAAAAGGCAGTGCCGCGACCTGAGAGGAACCATTCCGATCATCAAAGACAGACGATACTACTAA
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| Protein seq | QSCPSWLGVNLSTKNLQALRLDSIQWNKFPPLGELWLVNASGEESLGCTTSQSFQKLKRLELLGIPQLAKWVGNDASHVFSLLEVFIIRDCPELMELPFSHSTCPRSGQEMNLTQFPTLRELEVVNCPKLSSFPHIPWTSSPCRVLIDEVGSDFQRLDYSKNNQSEFCLKVVGKDGHLDMSFWNVLAFSNLTELKVLYLKKCPPLPLKHLLVLSCLRSPTIHDSSNVLLNVEAENTVGYQFQIEGLSIDDCSCSGKELTLLLSLFPKLSMFSLQGCGKIRVLGVAKEQTMAMSALSSSPSGHKLEDAHIGQEQEQEQLRGEDEKAAADAGLLLLPHQLQDLYIENISKLILQFDSLVDGMAGGLRSIGGGLQGLHFLRTLTIRGCPNFLSSYYSSSSSSCFPFPSSLQYLHLDGVGGMETLAPLSNLSSLTRLTIRKCMDLRGEDLSSLLAHGQLTNLNIFETPKFFVGCGSDSLRLQCLQTDDITKVLAAPICSLLASSLTSLTISWNDEVERFTKEQSAALLLLSSLQDLEFWYCSELQSLPTGLHRLTSLKRLKIWSCPAIRSLPKGGLPSSLEVLDVRSSNNEELKRQCRDLRGTIPIIKDRRYY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.266824 | 0.0 | 0.163038 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g49350 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0707350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028560 | SBH | 0.0 | 3.003087 | 0.779685 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028380 | RBH | 0.0 | 1.110955 | 0.291390 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028520 | RBH | 0.0 | 0.0 | 0.410222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028110 | RBH | 0.0 | 0.038639 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028600 | SBH | 0.0 | 0.0 | 0.815531 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0470400 | SBH | 0.2663465 | 0.262515 | 0.40943 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027960 | SBH | 0.016167 | 0.0 | 0.050213 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0453700 | RBH | 0.06652 | 0.40902 | 0.4896335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028500 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028570 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028150 | RBH | 0.0 | 2.933720 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028800 | SBH | 0.045012 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028430 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028290 | RBH | 0.0 | 0.0 | 0.241390 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028420 | SBH | 0.000000 | 2.451127 | 1.274637 |
