Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0178600 | OGI:06027190 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:10570671-10572513 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGCGGCATCTGCCTCCCTTGTGCGGCTCTGCATGGACTGCTCTCGCAGGGCTACAAGCCTCCCTATCTGCAGTCGGTGGTGCTGATGGAGATGGCATCGGTGGTCTATAAGCGGCACTGTACTGCTCCTTGCGGTGCGGCGCTGGGGCAGCCCCCGCGACGGCCGAGTGGTTGCCGACAACGGTGCGCCCACTGAACACCGCGTGGTGAAGGTCAATGTGCTTAAGAGGATCATTTTTGAAGGCGCTCGCACCTTTCTTGACCTGTCACAGTTATAGACATGCACAAGTTACATAACAGATGATATGCACTGATGCAAGCAAAGACACAGACACAAGGATGCAAGAAAGCTGAATCAACGTATTTCCTAATTTGTGTGTACACTGTTATTCTTAATTAGTAATAAATACTTCTTTTGGCTCATGTAATATAGATTATCAGTGCAAGTACTCACGCTGTGACATAGCCCAACTGCTGCTGCAACTACTACCACACAATATAAATGACACCATATGGCTAGCATCACCCTTCCTAGATCTTTTCAATTTCATTCATAAATATGAAACAACACAATATTCAGAGTTTCAGACAACACAATATTCAGATCTCTTCAACAAGATTTTCAGATAAGAGTTTCAGACAACACAATATTCAGAGTTTCAGACACACATCCATACCTCTACTCCCCTTGACAGACACGACAACAATGGCTAGTACCAAGCTAAGGAAGGAGGAAGAGGAGATCAGGCTCTGCTCCCATGCATCCACAGGTTTCTGCGGTCTAGGGCTATGGTCGTTAGGAAGTGTTGTTAGGAAACGATAGGCAAACAAGCAATAAAGAACTATAGATCAATCACAGAAGACACGAGATTTTAACGTGGAAAACCCTCTCAAAGTAGGAGAGAAAAAACCACAGGCGCCAGCCAGCAAAAATATCTTCACTATTTCTGGGGTGAGGTTACAACGCCGCACGACGGCTTACAAGAGGTATATATACGGGCCTCCGCTCCACTACGGCAGAAGCTGACCTTTATTAAGTGCAAATGAATTTGGATCACAACTCAACAAACTCCACCTTGAGACAAATTTCTTCTTGTAGCATGAAACAATCCTTCACCCTGAACACAACAAAGACAAAAAAACACTTTCGGCGCCAAATAGCCTCTTGGGATAAACCACTATACCAATTAAGCTTGAGCAAAGCTCAAACTTAGCAACAGGAACAGGCTTTGTCATCATATCAGCAGGATTATCATGAGTACTTATCTTGCATACCTTTAGTTTACCTTGCACGACTACATCGCGAACATAATGGTACTTGATATCAATGTGCTTTGTCCTCTCATGAAACATCTGATCTTTAGTGAGGCATATAGCACTTTGACTGTCACAAAACAAGTTAATGCAAGAATCAACTCCACAAAGCTCAGCAAACAATCCTTTCAGCCAAACTGATTCTTTACATGCTTCAACAATAGCCATGTATTCTGCTTTAGTGGTAGACTGGGCAACAACAGGCTGCAATGTTGCCTTCCAACTCACAGCACAACTACCAATAGTAAACACATAACCTGTGAGTGACCTTCTCTTATCCAAATCTGCAGCAAAATCTGAATCCACATATCCAACAAGCCCCTTATCAGTCCTGCCAAACTTCAAGCAAGCATCAGCTGTGCCTCTGAGGTACTTGAAAATCCACTGAACAGCTTTCCAGTGTTCTTTACCAGGATTAGCCATGTATCTACTAACCAAACTCATAGCAAGAGATAAATCTGGACGGGAGCAAACCATGGCATACATCAAAGAACCAACAGCACTAGAATATGGAACTCTAGACATGTA
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| CDS seq | ATGTCTAGAGTTCCATATTCTAGTGCTGTTGGTTCTTTGATGTATGCCATGGTTTGCTCCCGTCCAGATTTATCTCTTGCTATGAGTTTGGTTAGTAGATACATGGCTAATCCTGGTAAAGAACACTGGAAAGCTGTTCAGTGGATTTTCAAGTACCTCAGAGGCACAGCTGATGCTTGCTTGAAGTTTGGCAGGACTGATAAGGGGCTTGTTGGATATGTGGATTCAGATTTTGCTGCAGATTTGGATAAGAGAAGGTCACTCACAGGTTATGTGTTTACTATTGGTAGTTGTGCTGTGAGTTGGAAGGCAACATTGCAGCCTGTTGTTGCCCAGTCTACCACTAAAGCAGAATACATGGCTATTGTTGAAGCATGTAAAGAATCAGTTTGGCTGAAAGGATTGTTTGCTGAGCTTTGTGGAGTTGATTCTTGCATTAACTTGTTTTGTGACAGTCAAAGTGCTATATGCCTCACTAAAGATCAGATGTTTCATGAGAGGACAAAGCACATTGATATCAAGTACCATTATGTTCGCGATGTAGTCGTGCAAGGTAAACTAAAGGTCAAGAAAGGTGCGAGCGCCTTCAAAAATGATCCTCTTAAGCACATTGACCTTCACCACGCGGTGTTCAGTGGGCGCACCGTTGTCGGCAACCACTCGGCCGTCGCGGGGGCTGCCCCAGCGCCGCACCGCAAGGAGCAGTACAGTGCCGCTTATAGACCACCGATGCCATCTCCATCAGCACCACCGACTGCAGATAGGGAGGCTTGTAGCCCTGCGAGAGCAGTCCATGCAGAGCCGCACAAGGGAGGCAGATGCCGCTAA
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| Protein seq | MSRVPYSSAVGSLMYAMVCSRPDLSLAMSLVSRYMANPGKEHWKAVQWIFKYLRGTADACLKFGRTDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTKAEYMAIVEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVVVQGKLKVKKGASAFKNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPAPHRKEQYSAAYRPPMPSPSAPPTADREACSPARAVHAEPHKGGRCR |
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| Function | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0178600 | OsMH63_06T0178600.1 | Chr06 | 10570671 | 10572513 | - | maker | ||
| CDS seq | ATGTCTAGAGTTCCATATTCTAGTGCTGTTGGTTCTTTGATGTATGCCATGGTTTGCTCCCGTCCAGATTTATCTCTTGCTATGAGTTTGGTTAGTAGATACATGGCTAATCCTGGTAAAGAACACTGGAAAGCTGTTCAGTGGATTTTCAAGTACCTCAGAGGCACAGCTGATGCTTGCTTGAAGTTTGGCAGGACTGATAAGGGGCTTGTTGGATATGTGGATTCAGATTTTGCTGCAGATTTGGATAAGAGAAGGTCACTCACAGGTTATGTGTTTACTATTGGTAGTTGTGCTGTGAGTTGGAAGGCAACATTGCAGCCTGTTGTTGCCCAGTCTACCACTAAAGCAGAATACATGGCTATTGTTGAAGCATGTAAAGAATCAGTTTGGCTGAAAGGATTGTTTGCTGAGCTTTGTGGAGTTGATTCTTGCATTAACTTGTTTTGTGACAGTCAAAGTGCTATATGCCTCACTAAAGATCAGATGTTTCATGAGAGGACAAAGCACATTGATATCAAGTACCATTATGTTCGCGATGTAGTCGTGCAAGGTAAACTAAAGGTCAAGAAAGGTGCGAGCGCCTTCAAAAATGATCCTCTTAAGCACATTGACCTTCACCACGCGGTGTTCAGTGGGCGCACCGTTGTCGGCAACCACTCGGCCGTCGCGGGGGCTGCCCCAGCGCCGCACCGCAAGGAGCAGTACAGTGCCGCTTATAGACCACCGATGCCATCTCCATCAGCACCACCGACTGCAGATAGGGAGGCTTGTAGCCCTGCGAGAGCAGTCCATGCAGAGCCGCACAAGGGAGGCAGATGCCGCTAA
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| Protein seq | MSRVPYSSAVGSLMYAMVCSRPDLSLAMSLVSRYMANPGKEHWKAVQWIFKYLRGTADACLKFGRTDKGLVGYVDSDFAADLDKRRSLTGYVFTIGSCAVSWKATLQPVVAQSTTKAEYMAIVEACKESVWLKGLFAELCGVDSCINLFCDSQSAICLTKDQMFHERTKHIDIKYHYVRDVVVQGKLKVKKGASAFKNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPAPHRKEQYSAAYRPPMPSPSAPPTADREACSPARAVHAEPHKGGRCR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.4894155 | 2.321046 | 2.0373915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g19160 | SBH | 0.0 | 0.000000 | 0.072731 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0012020 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0011420 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0177300 | RBH | 0.003282 | 0 | 0.003087 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0011680 | SBH | 0.000000 | 0.000000 | 0.413102 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0203200 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0012100 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0012320 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0012000 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0012190 | RBH | 0.0 | 0.0 | 0.000000 |
