Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_06g0012020 OGI:06027190 | 16/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr06:10429510-10440794
Gene Symbol -
DNA seq

ctagtgaacataccctggatgttccttcaaggccatacgacgtgatcgggaggtcatgtaaactgtgtatccgttctgcaattagccggaaaattgcccaacattagcttcaatttgccatcgtttccaccatccaactgattttggtttgaaccggtattctcttggtgctctctcgtttatctcaatactagcggctagtatgtcactgatggtgtcgtcctcgttgctgctaatgtgccctcctgtccagctcgatccaccagcgacggaactcatgcacggatatgtagaaaaaaaatacttgcaatttgcacaaatggagtaataaagccgcaattgttggacagcacctcgtagcaaatgttagcacgcataaattgataaacataatgacatgtttatttttaaaacaacacactgcacaattgacagtgaattggaagtacaaggtgcaaactaatgcgtgccaccagatgaggaatctgctccgtttccacgagtagagatatattctaggcgagttgcggcgtcgtggaggcaaacgaaacagtggcagtggaattcatcacggaaaagacgacaagtatcataccacactagccctccagtacggtgcccaacattttccaccaactccaagcaagcctcaagccctttagccttagcggcatctgcctcccttgtgcggctctgcatggactgctctcgcagggctgcaagcctctccagtgcctgtccagtggagtcgcttcgggacttcttcgaagacccccccccccccgaggcaccactttctgttgctggcctttttcccttatccctatctgcagtcggtggtgctgatggagatggcattggtggtctataagcggcactataccgctccttgcggtgcggcgctggggcagcccccgcgacggccgagtggttaccgacaacggtgcgcccactgaacaccgcgtggtgaaggtcaatgtgcttaagaggatcatttttgaaggcgctcgcacctttcttgacctgtcacagttatagacatgcacaagttacataacagatgatatgcactgatgcaagcaaagacacagacacaaggatgcaagaaagctgaatcaacgtatttcctaatttgtgtgtacactgttattcttaattagtaataaatacttcttttggctcatgtaatatagattatcagtgcaagtactcacgctgtgacatagcccaactgctgctgcaactactaccacacaatataaatgacaccatatggctagcatcacccttcctagatcttttcaatttcattcataaatatgaaacaacacaatattcagagtttcagacaacacaatattcagatctcttcaacaagattttcagataagagtttcagacaacacaatattcagagtttcagacacacatccatacctctactccccttgacagacacgacaacaatggctagtaccaagctaaggaaggaggaagaggagatcaggctctgctcccatgcatccacaggtttctgcggtctagggctatggtcgttagaaagtgttgttaggaaacgataggcaaacaaacgataaagaactatagatcaatcacagaagacacgagattttaacgtgaaaaaccctctcaaagtaggagagAaaaaaccacatgcgccagccagcaaaaatatcttcactatttctgggatgaggttacaacgccgcacggcggcttacaagaggtatatatacgggcctccgctccactacggtagaagctggcctttattaagtgcaaatgaatttggatcacaactcaacaaactccaccttgagacaaattccttcttgtagcatgaaacaatccttcaccctgaacacaacaaagacaaaaaaaacactttcggcgccaaatagcctcttgggataaaccactatatcaattaagcttgagcaaagctcaaacttagcaacaggaacaggctttgtcatcatatcagcaggattatcatgagtacttatcttgcatacctttagcttaccttgcgcgactacatcgtgaacataatggtacttgatatcaatgtgctttgtcctctcatgaaacatctgatctttagtgaggcatatagcactttgactgtcacaaaacaagttaatgcaagaatcaactccacaaagctcagcaaacaatcctttcagccaaaatgattctttacatgcttcaacaatagccatgtattctgctttagtggtagactgggcaacaacaggctgcaatgttgccttccaactcacagcacaaccaccaatggtaaacacataacctgtgagtgaccttctcttatccaaatctgcagcaaaatctgaatccacatatccaacaagccccttatcagtcctgccaaacttcaagcaagcatcagctgtgcctctaaggtacttgaaaatccactgaacagctttccagtgttctttaccaggattagccatgtatctactaaccaaactcatagcatgagataaatctggatgggaacaaaccatggcatacatcaaagaaccaacagcactagaatatggaactctagacatgtattctacatcctcatcagtactagcacattgtaaagctgataatttaaaatgaggtgcaataggagtactaacaggctttgcatcatgcatgttaaaacgctgaagaaccttcttaatgtagctttgctgactaagaaataacaaatcagaatttctgtctctagtgatttccatacctagaattttcttagcaacaccaagatccttcatatcgaactcactactcaactgtttcttcaatgtagtgatttgttccttgctcttagcagcaatcaatatatcatcaacatataacaacaagtatataggtgatccattaacaaatttaatatacacatagctatcaaatttagacctcttaaagccatgtgacaacataaatgaatcaaaccttttataccattgacgaggagactgtttcagtttgtcaccatccggcgatgggcctccgctccactacgatagaagctggcctttattaagtgcaaatgaatttggatcacaactcaacaagtgtgagactgagagagggccagggaggcaagcatccttaatcgaaatcgcagcttacatagaccacccctatttggatccagggacttatttttggtccctatcatatcggatgtttgggacactaattagaagtattaaacatagactaatgataaaacctattccataaccctggactaatttgcgagacgaatctattgagcctaattaatccatgattagcctatgtgatgctatagtaaacatgtgctaattatggattaattaggcttaaaaaaatgtctcgcgaattagctcttatttatgcaattagttttgtaagtaatctattttcaaacatctgatgtgacatagtccctagatccaaacaccaccttagcacgtgcggtcaaaaatcgtctactgattcagtatgttgactaaggttaaatggccacatcagatgaaaccacctactatactactcaagtagtcgttttacacgggtttcaccacttgtgaaatacctggttttactcgggtcatagttgagggagtcaaagtgtactttttcctacaaatgatagacacgataaatttgactcattgtcgattttatagagcttcttttttgtttatttggataaatttgacccatgttcgattttatagagcttttttttcgtttgtttgtttgagtgggcattggaccaaagttcaggttttcatactacataagatagattaagaacgactactgcttatgtataaaatttaattagttcaggtatcatctgaggatggatGgggcctGggggagaactcaggcgggtgtgaatcctgtgtgcagtaatacaacaagcaataaaaatttacacctactggcaggctcgcacgacaaggaataaaattttactagctagtactatgctgttacctcgtttaagagcaattagatttctatgtcactgtgatctagtaataacacgttgttactgttagggatcacacatatttcagaatactccgtatgaaaacgacaacttcacaaacaactcctttcttatcagtcagacagttaaaaatgtagttcaggtaatcacgagttctaatattatactccctccatccctaaatatttgacgtcgttgactttttcaatatgtttaaccgttcgtcttattcaaaaacttttgtgaaatatgtaaaactatgtgtatacataaaaatatatttaacaatgaaccaaatgataggaaaataattaataattattttttgaataagacaaatggtcaaacatgtttaaaaaagtaaacggtgtcaaatatttagaaacggaaggagtaatatatatccaaaaaataatttcttagtgagtctctttattaatttctatccagaactattttatagttgcacaaatattctccggacaatttttctattttttattcttgctaccttttgttaaggtacttattccagctaattcttcacatatctatcgagcttaattaaatttacatgacagatccagcttgcatgattatcgtgtaatctaaagaattctactctcgccaatgacaaggactcaaggcaatgtactgctatatgcatcggatatgatgactaggtccatctcaattctttacagtgttggaacctggactattacaaactgtaaactcgtggaatccaatgttgggtagcacatctcagctgtaaaaaaggacacagctacagaaagcaactacacgtggactgtatatcaaactctattcacatgcatggctcatgtttcaccattaattggaaagctgaagtttaagacagtgggcattttattaaacatgaattttgatggcattctcgaagttcaaattaagaaacacttccatatgtgtcctttctatcataaacattacaactagcatatatactgaaatagagtgtaggaataagtcttggctggttggtcttggtcttgtgatgctttttcctgcttttcagctttctaggacagcatctctactttcagtttgaatgctctaggacagttaggacagcagtttgttgagatgctctaggacagtttgttgggatgctctgctctaggatagtttgttgggatgctctaggacagcaccctcttagactagcatggctgcatggctgctacaagcagctataaatatgtatccaatcctctttgggaggacatggcttttgtgtttagtgaatgaagaaaaaccagaaaattgccccatctcgagtgccatcctcttctcaatgagagtaaccattgaaattctaacatctggtatcagagccacactttcctgtaggctaaacatctcttgttccaccccttcccaagctcggttgagctctcagccagcagcagcagcagcaccggttgctcctccttcccccttcccttccccctctccacgcagcagccccccggaggtgcgccatgtccgacgctcggtctcggcgttcggtcgcctcgagcactcggcgtcagtaggacaccgagctcgccgcagcagaagagcgcaggcgagcaacggctcagaccgctgcagcagcagcgagggcagccagactggcggcagcggagttggcagcagccagggcggaggcggaggcggaggcggcggaagatgcggcacgtgcggcggaggtagaggttgagaccttgcgcagcagcatcaacggctccatcgccggcgacatcaccgccgacagggagcttgaggagctggcaagaggaagggcacgggagcgagcagagcggtgggcagcagcccacctccacggcggcggcggcggcggcccaagggaccgcgcgcccgccgacgggaacccagacgggcgcgggcgtgccggcggcagcccggagcccgcgcgcggccctcgcaggcagcgtggctctccctcccctgaccggcaccatggccaccacggcgtccagacggtggtcagggactttggtcccggcggtgggtggcctaccctcaccaaaaccaactacatcgagtgggccgcggtgatgagggtgaggctctaggtgcggcacatgtgggaggcagtccggtacggtgacgtcgactacgacgaggatcggcgggcactggatgccctcatcgctgcagttccgcccgagatgcagttctcgctttcccagaagcggactgccaaggaggcctgggacgccatcgctgcggcacgcatcggcagcgaccgcgcccgcaagtccacactgcaggcactccgcaaggagtgggagaacctggccttcaagccaggtgaggatgttgatgactttgctctccgtctcaacactctcttgcagaaaatggtgcagtacggcgacgacacctacgacgaggagagagctgtcgagaagctctttcgctgcgtccctgagaagtacagacagatcgctcgctcgatcgaatctctgctggacctctccactatgtcgatcgaggaggcgttaggtcgcctcaaggtcgttgatggtgatgagccacagcctctctcggggcccatcaccatcggcgggaagctccatctcactagggagcagtgggaggcctctcagggtgacgggaggaagggggagtcatcttccccgacaggcggccgtaagccgcgcggggaggtgtccagctacggtgggcgcgaagacgtgccgagggtggcgcccgcagaggcgcccagggcgttgccaccggcaaccacaagccggcacgagacgacgcctgccgcaattgtggcaagcttggccattgggccaaagactgtcgacagccacgacgcggccaggcccacgtcgcacgggtggaggaggaagagccggctctgctcctggctcacgcaagcatcgagctacctccagcggcaccggccgcagcggctttcctccaccttgatgagccgaaggtactcgtctccctctgcaacggctccagcaacgacaaggctgatgggtggtacctcgacaccggcgccacccatcacatgatcggccgacgggagttcttcaccgagttcgactccagcgtccgaggctccgtcaagttcggggacgcctccggcgtggagatcaagggtgttggctccgtcaccttcaccgccaagtccggtgagcacaggctgctcactggagtctactacatccccgcgttgaggaattctatcatcagtgtgggacagctggatgagaacggctcacgcgtgctggtcgaggacggactcatgaggatttgggatcgccgtcgtcgccttcttgccaaggtaaccagaggcactaatcgactctacatcctcagcgcgcaggtcgcacaaccagtttgcctcgccgctcgtcgggacgacgaggcgtggcagtggcacgagcgcttcgggcaccttcacttcgaggccctgaagcagctcagtgccaaggagatggtgcgaggtatgccgtgccttgaccacgtggagcagctctgcgacgtctgcgtggtgacgaagcagcggcggctcccctttccccagcagatgagcttccgagccaaggagcggctcgagctcgtgcacggggacttgtgtggcccaatgacaccggccacaccaggaggacgacgttacttcctgctgctcgtcgacgacctctcccgctacatgtgggtgatggtcctcggcagcaagggagaggctgcggacgccatcaggcatgcgcaggctgctgcagaggcggagtgcggccgcaagctgcgcgtactgcgcaccgacaacggcggcgaattcacggcggctgaattcgcgttgtactgcgctgatgagggcattcagcaccactacaccgcgccgtacagcccgcagcagaacggcgtcgtcgagcggcgcaaccagacggttgtggggatggctcGggGCTCTCCTCAAGCAGAGGggggatgccggccatcttctggggagaggcggtggtgacggccgtctacatcctcaaccgctcgcctaccaaggccctcgatggcaggacaccgtacgaggcttggcatgggcgcaagccaggggtctcccacctgcgggtcttcggctgcctcgcgttcgtcaaggagcttggccccatcggcaagctcgatgacaggagcaccccaagggtgttcatcggctacgcggagggcttgaaggcctatcgcatcctcgacccggagacacagcgtgtgcgcacagcgcgcgacgtagtgttcgacgaagggcgagggtgggtatgggacaagacggtggacgatggttcgactccgacgtacgatgacttcaccgtcgagtatgtccacttcgagagagctaggggagtaggcagctcttcttcaccaagcgtgtctaccgcagtccccgagcctccatcgactccgacaccaacacaccctcgggccacggcttcgactgcgacgagctcttcgccgacaccaccacagccggcaaacccacgcgccccagcaccaacagccactcctccgagcacgtctactccgacgccagctcgtgttgagcgcagcccggtggagttcgctactccgctctcccacgacggggagcgcatcgacgcgtaccacgacggcgagcagctacggtaccgtacgatggaggatcttctcggtgaccagcccgtgccaggaatggtgcctcgcgacctggaggcgcagttgcaccttgcgtgcgacgacggtgagcctcagtctttcgcagaggccgagaaacacgcggcatggcgtgccgcgatgcagtcggagatggacgcggttcaggagaaccgcacctgggagcttgttgatctccctcgtggtcaccgcgcgatcacccttaagtgggtgttcaagttgaagagggatgaagccggagccatcgtcaagcacaaggctcgcttggtggcacgcggtttcgtgcagcaggaggggatcgactacgacgatgccttcgctcccgtggcacggatggagtccgtgcgactcctccttgcgctagctgctcaggaaggctggggcgtccatcacatggacgtcaagtcggcgtttctgaacggcgacttgaaggaggatgtctacgtgtaccagccgtcgggattcatgatccccggcaaggagggcaaggtgctacgcctgcacaaggcactctatggcttgcggcaggcaccgagggcgtggaatgccaagttggattccacgctcaaggggatgggcttcgagcaaagcccgcacgaggcggccatctaccggcggggcaatggaggaaatgccttgctggtgggtgtctacgtcgacgacttggtgatcaccggcaccaaggatgcggaggtcgcggcgttcaaggaggagatgaaggccaccttccagatgagtgatctggggcctctctccttctacctggggatcaaggtgtaccaggacgactccgggatcacgcttcggcagaccgcctacgccaagcgcgtcgttgagctggctgggctcaccgattgcaacccagctctcactccgatggaggagagactgaagctgagccgcgacagcacggcggaggaagtggatgctacacagtaccggcgtcttgtggggagccttcgctacctcacccacacacggccggacttggccttctccgtcggctacgtcagtcggttcatgcagcgaccgacgacggagcaccagcaggctgtgaagaggatcatccgctacgttgcggggactctcgaccacggtctctactacccgaggtgtcctggcaaggcacacttcgtcgggtacagcgacagcgaccacgccggcgacattgacaccagcaagagcacgagcgggattctcttcttcctcggcgagtgcctcgttagctggcagtcaatcaagcagcaggtggtggccctgtccagctgcgaggccgagtacatggcggcatccgccgcttcgacccaggcgctctggcttgctcgactgcttagtgatctcctcggcagagatactggagcggtggagctcagggtggatagcaagtccgctctggccctggcaaagaaccccgttttccacgaacggagcaagcacatccgggtgaggtaccatttcatccgaagctacttggaggaagggagcatcaaggcgagctacatcaacaccaaggaccagcttgcggaTttgctcaccaaaccccttgggaggatcaagttccttgagctttgctcccggatcgggatggctcaactttcccacaagacggcgcacaagacttagggggagaatgtaggaataagtcttggctggttggtcttggtcttgtggtgccttttcctgcttttcagctttctaggacagcatctctactttcagtttgaatgctctaggacagttaggacagcagtttgttgagatgctctaggacagtttgttgggatgctctgctctaggacagtttgttgggatgctctaggacagcaccctcttagactagcatggctgctacaagcagctataaatatgtatccaatcctctttgggaggacatggcttttgtgtttagtgaatgaagaaaaactagaaaattgccccatctcgagtgccatcctcttctcaataagagtaaccattgaaattctaacatagagcaccggaatggaaacatgatagttcacagttgggttaataggaattgtgtgacttgcctcacagtaaaaaagagcagccagtagcggagtagccgttgctacaatagaagctttcaacctgcaaaacagtagcaagagaaacgtgccaacagtttaatcagatcttgacttgggagttggatatctagtagactccagaaagtagtatatcttcgcagaagaacaccaaaactcccaagtctttcaggtcaaataaagtatagataagtccgtatcagacgaccatataaaatacgcaagtgcctccaccgatcgtagacagattcatgagaagctgataaaaaggaataaacaagatgagctcgaatcaacatcacttgtttccttaaaaaaaaacaactacacttttaaaactgacaaggattggaagaaaggtctgcccatggccagcctccattaagctaatgtatgcatggtgaagcacctgcttggcatagagtcattgacgccttgaggcacctcctttctgtcat

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CDS seq

atgacagaaaggaggtgcctcaaggcgtcaatgactctatgccaagcagcagcagttgggctatgtcacagcgtcaagaaaggtgcgagcgccttcaaaaatgatcctcttaagcacattgaccttcaccacgcggtgttcagtgggcgcaccgttgtcggtaaccactcggccgtcgcgggggctgccccagcgccgcaccgcaaggagcggtatagtgccgcttatagaccaccaatgccatctccatcagcaccaccgactgcagatagggataagggaaaaaggccagcaacagaaagtggtgcctcgggggggggggggtcttcgaagaagtcccgaagcgactccactggacaggcactggagaggcttgcagccctgcgagagcagtccatgcagagccgcacaagggaggcagatgccgctaaggctaaagggcttgaggcttgcttggagttggtggaaaatgttgggcaccgtactggagggctagtgtggtatgatacttgtcgtcttttccgtgatgaattccactgccactgtttcgtttgcctccacgacgccgcaactcgcctagaatatatctctactcgtggaaacggagcagattcctcatctggtggcacgcattattccgtcgctggtggatcgagctggacaggagggcacattagcagcaacgaggacgacaccatcagtgacatactagccgctagtattgagataaacgagagagcaccaagagaataccggttcaaaccaaaatcagttggatggtggaaacgatggcaaattgaagctaataacggatacacagtttacatgacctcccgatcacgtcgtatggccttgaaggaacatccagggtatgttcactag

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Protein seq

MTERRCLKASMTLCQAAAVGLCHSVKKGASAFKNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPAPHRKERYSAAYRPPMPSPSAPPTADRDKGKRPATESGASGGGGSSKKSRSDSTGQALERLAALREQSMQSRTREADAAKAKGLEACLELVENVGHRTGGLVWYDTCRLFRDEFHCHCFVCLHDAATRLEYISTRGNGADSSSGGTHYSVAGGSSWTGGHISSNEDDTISDILAASIEINERAPREYRFKPKSVGWWKRWQIEANNGYTVYMTSRSRRMALKEHPGYVH

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_06g0012020 OsKeNa_06g0012020.01 Chr06 10429510 10440794 - NAM
CDS seq

atgacagaaaggaggtgcctcaaggcgtcaatgactctatgccaagcagcagcagttgggctatgtcacagcgtcaagaaaggtgcgagcgccttcaaaaatgatcctcttaagcacattgaccttcaccacgcggtgttcagtgggcgcaccgttgtcggtaaccactcggccgtcgcgggggctgccccagcgccgcaccgcaaggagcggtatagtgccgcttatagaccaccaatgccatctccatcagcaccaccgactgcagatagggataagggaaaaaggccagcaacagaaagtggtgcctcgggggggggggggtcttcgaagaagtcccgaagcgactccactggacaggcactggagaggcttgcagccctgcgagagcagtccatgcagagccgcacaagggaggcagatgccgctaaggctaaagggcttgaggcttgcttggagttggtggaaaatgttgggcaccgtactggagggctagtgtggtatgatacttgtcgtcttttccgtgatgaattccactgccactgtttcgtttgcctccacgacgccgcaactcgcctagaatatatctctactcgtggaaacggagcagattcctcatctggtggcacgcattattccgtcgctggtggatcgagctggacaggagggcacattagcagcaacgaggacgacaccatcagtgacatactagccgctagtattgagataaacgagagagcaccaagagaataccggttcaaaccaaaatcagttggatggtggaaacgatggcaaattgaagctaataacggatacacagtttacatgacctcccgatcacgtcgtatggccttgaaggaacatccagggtatgttcactag

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Protein seq

MTERRCLKASMTLCQAAAVGLCHSVKKGASAFKNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPAPHRKERYSAAYRPPMPSPSAPPTADRDKGKRPATESGASGGGGSSKKSRSDSTGQALERLAALREQSMQSRTREADAAKAKGLEACLELVENVGHRTGGLVWYDTCRLFRDEFHCHCFVCLHDAATRLEYISTRGNGADSSSGGTHYSVAGGSSWTGGHISSNEDDTISDILAASIEINERAPREYRFKPKSVGWWKRWQIEANNGYTVYMTSRSRRMALKEHPGYVH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0295500 RBH 0.651286 0.386702 1.563368
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g19160 SBH 0.0 0.000000 0.072731
Nipponbare | IRGSP 1.0 | RAP-db Os06g0295500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0012150 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0012050 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0012100 RBH 0.0 0.000000 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0012200 SBH 0.548556 0.000000 2.070420
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0178600 RBH 0.4894155 2.321046 2.0373915
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0011680 RBH 0.000000 0.000000 0.413102
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0174100 RBH 0.637118 1.8965265 2.7064695
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0012240 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0012100 RBH 0.000000 0.000000 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_06g0012320 RBH 0.0 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0012000 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G011850 RBH 0.000000 0.000000 0.250925
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0012190 RBH 0.0 0.0 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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