Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_06G0095200 | OGI:06016040 | 1/16 | Minghui 63 | MH63RS3 | HZAU | Chr06:5451322-5453001 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATTTGTTATTGTGTGCCTCGGCTGATTCCTGGACGAGGGTTTACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACATTCTGCTTGGCCTCACTTCGCCGATTACCGGAGGGAACCGCCGGGGACCTGCCCTCACGGCGCTCCTGCCTCCTCTCCTCCTCCCACTTCCTCGTTCGCTCTGCCAAACTTTTGACTGCGCGACAGTCCACGAGGTCGTGGAGGGAGGTGTTGTGGACGGTGCACCACTTGCCGGCTGGGTGCTCCCTGCTGGGAGCGCCGGCCTTTTTCTTTTTGTCGCTCGCAGGCCTCCCCTTTTGGGTGGCCCGCGAAGCGCCCTCGACGGCGAGGACATGACCCTCGTCGTCGGAATGGATTGACCTCTTCTTCCTCCTCCTGTCACGCCGCCCTGTCTGAGCGGCGGATCCGGGGGCGGCCGAAGCTGCCACACCGGAACCGGAGGGGTTCCAAGTCCAGGCCTCCTCCTTGCGAGCCACTCGGTCCGCGAGCTGAAAAAGCTCCGCGGTAGTCTGGGGCTCCTTGGAGGCGATCTTTTCGAGCATGCTGTTGTGCCGCACGCCCCCCCTGAACGCGTAGATTACCGCGTGTGCAGGGATGCACGGTATGGTGTTGCGGATTTGACAGAACCGCTGAATGTACGAGCGAAGTGACTCATCATCCCTTCGCTGTACTGCGTGTAAGTCCGCTTCTTCACCTGGGCGCGGATATGTGCCCTGAAAGTTCATGGTGAACTGTTGGCACAAATCCTCCCAGGAGTGGACTGACGCGGGTGGCAAGTTCATTAGCCAACCCCGCGCCTGCCCCTTCAGGGCCATGGGAAAGAAATTCGCCATGACCCTGTCGTCACCCCCGGCGGCCTCAATCCCGGTCGTGTAGACCTGGAGAAACTCGGCGGGGTTGACGCTGCCATCATATTTTTCGGCGATGGTGGGCCGGAACCTTGGGGGCCAACGGACATTCCGAAGACTCGCCACAAAGGCTCTACAGCCGACACCACCAACCGGGGGCACGGAGGGCTGATTCCCGCGTCCGTGTTGAGGTGACACTCTGGACGAGGAAGCGCCCTCCGTTGCGTGGGGAGCACTTCGGTCATTACGCCGGCGCTCGATGCTGGTGCGGGCGTCCGGCCCCCCACGCAGATCTTCCCGGGTCGAAGGAGTTGACGAAGGAGTGGCGGCCGAATGGCGAACAGCGGCTGCCGCTCGTCGTGCCCTCCGTCTTGACGACGCGGAGCCGGTGGTAGCAGCACCAGAGGCCTTGGTGGCGGAGGACCGCCCACCAGCATCTAGGCGCTGCCGTGCCGTCATGACTAATTTGGCCACGTCGTCCAGCCATCGTTGGGCTGGAGACTCCGGGTCAGGGACGACAGGCGGGTGGCGTAAGAGCGCGCCCGCAGCTTGGAGCGCGCCCTGGGGCGTGCTGCCGTCGCCGTAGACGAGGAGGCGACGCTCCCCATCTCGCCGTTCTTCTCCATCGCCCGCGATCGGTGAAGTCGCGGATCTTTCGACCCTCTCGAGCGCCTCCCCCCGCTTAGGACTTTGGCGTGGAGGGGGCGGTGGAGTACGAGCTCGACGGCGTGGGTTCGGCTCCCCGTCGTCGCCACTCACACTCGGAGAGAGGTCGTGCGCCTTTGCTTGCTCGGCCAT
More
|
||||||||||
| CDS seq | ATGGCCGAGCAAGCAAAGGCGCACGACCTCTCTCCGAGTGTGAGTGGCGACGACGGGGAGCCGAACCCACGCCGTCGAGCTCGTACTCCACCGCCCCCTCCACGCCAAAGTCCTAAGCGGGGGGAGGCGCTCGAGAGGGTCGAAAGATCCGCGACTTCACCGATCGCGGGCGATGGAGAAGAACGGCGAGATGGGGAGCGTCGCCTCCTCGTCTACGGCGACGGCAGCACGCCCCAGGGCGCGCTCCAAGCTGCGGGCGCGCTCTTACGCCACCCGCCTGTCGTCCCTGACCCGGAGTCTCCAGCCCAACGATGGCTGGACGACGTGGCCAAATTAGTCATGACGGCACGGCAGCGCCTAGATGCTGGTGGGCGGTCCTCCGCCACCAAGGCCTCTGGTGCTGCTACCACCGGCTCCGCGTCGTCAAGACGGAGGGCACGACGAGCGGCAGCCGCTGTTCGCCATTCGGCCGCCACTCCTTCGTCAACTCCTTCGACCCGGGAAGATCTGCGTGGGGGGCCGGACGCCCGCACCAGCATCGAGCGCCGGCGTAATGACCGAAGTGCTCCCCACGCAACGGAGGGCGCTTCCTCGTCCAGAGTGTCACCTCAACACGGACGCGGGAATCAGCCCTCCGTGCCCCCGGTTGGTGGTGTCGGCTGTAGAGCCTTTGTGGCGAGTCTTCGGAATGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCGCCGAAAAATATGATGGCAGCGTCAACCCCGCCGAGTTTCTCCAGGTCTACACGACCGGGATTGAGGCCGCCGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTGAAGGGGCAGGCGCGGGGTTGGCTAATGAACTTGCCACCCGCGTCAGTCCACTCCTGGGAGGATTTGTGCCAACAGTTCACCATGAACTTTCAGGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTACACGCAGTACAGCGAAGGGATGATGAGTCACTTCGCTCGTACATTCAGCGGTTCTGTCAAATCCGCAACACCATACCGTGCATCCCTGCACACGCGGTAATCTACGCGTTCAGGGGGGGCGTGCGGCACAACAGCATGCTCGAAAAGATCGCCTCCAAGGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTCGCGGACCGAGTGGCTCGCAAGGAGGAGGCCTGGACTTGGAACCCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCAGACAGGGCGGCGTGACAGGAGGAGGAAGAAGAGGTCAATCCATTCCGACGACGAGGGTCATGTCCTCGCCGTCGAGGGCGCTTCGCGGGCCACCCAAAAGGGGAGGCCTGCGAGCGACAAAAAGAAAAAGGCCGGCGCTCCCAGCAGGGAGCACCCAGCCGGCAAGTGGTGCACCGTCCACAACACCTCCCTCCACGACCTCGTGGACTGTCGCGCAGTCAAAAGTTTGGCAGAGCGAACGAGGAAGTGGGAGGAGGAGAGGAGGCAGGAGCGCCGTGAGGGCAGGTCCCCGGCGGTTCCCTCCGGTAATCGGCGAAGTGAGGCCAAGCAGAATGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTAAACCCTCGTCCAGGAATCAGCCGAGGCACACAATAACAAATTGA
More
|
||||||||||
| Protein seq | MAEQAKAHDLSPSVSGDDGEPNPRRRARTPPPPPRQSPKRGEALERVERSATSPIAGDGEERRDGERRLLVYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVAKLVMTARQRLDAGGRSSATKASGAATTGSASSRRRARRAAAAVRHSAATPSSTPSTREDLRGGPDARTSIERRRNDRSAPHATEGASSSRVSPQHGRGNQPSVPPVGGVGCRAFVASLRNVRWPPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQIRNTIPCIPAHAVIYAFRGGVRHNSMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAAQTGRRDRRRKKRSIHSDDEGHVLAVEGASRATQKGRPASDKKKKAGAPSREHPAGKWCTVHNTSLHDLVDCRAVKSLAERTRKWEEERRQERREGRSPAVPSGNRRSEAKQNVTPGISIQNSKRLHVCKPSSRNQPRHTITN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_06G0095200 | OsMH63_06T0095200.1 | Chr06 | 5451322 | 5453001 | - | maker | ||
| CDS seq | ATGGCCGAGCAAGCAAAGGCGCACGACCTCTCTCCGAGTGTGAGTGGCGACGACGGGGAGCCGAACCCACGCCGTCGAGCTCGTACTCCACCGCCCCCTCCACGCCAAAGTCCTAAGCGGGGGGAGGCGCTCGAGAGGGTCGAAAGATCCGCGACTTCACCGATCGCGGGCGATGGAGAAGAACGGCGAGATGGGGAGCGTCGCCTCCTCGTCTACGGCGACGGCAGCACGCCCCAGGGCGCGCTCCAAGCTGCGGGCGCGCTCTTACGCCACCCGCCTGTCGTCCCTGACCCGGAGTCTCCAGCCCAACGATGGCTGGACGACGTGGCCAAATTAGTCATGACGGCACGGCAGCGCCTAGATGCTGGTGGGCGGTCCTCCGCCACCAAGGCCTCTGGTGCTGCTACCACCGGCTCCGCGTCGTCAAGACGGAGGGCACGACGAGCGGCAGCCGCTGTTCGCCATTCGGCCGCCACTCCTTCGTCAACTCCTTCGACCCGGGAAGATCTGCGTGGGGGGCCGGACGCCCGCACCAGCATCGAGCGCCGGCGTAATGACCGAAGTGCTCCCCACGCAACGGAGGGCGCTTCCTCGTCCAGAGTGTCACCTCAACACGGACGCGGGAATCAGCCCTCCGTGCCCCCGGTTGGTGGTGTCGGCTGTAGAGCCTTTGTGGCGAGTCTTCGGAATGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCGCCGAAAAATATGATGGCAGCGTCAACCCCGCCGAGTTTCTCCAGGTCTACACGACCGGGATTGAGGCCGCCGGGGGTGACGACAGGGTCATGGCGAATTTCTTTCCCATGGCCCTGAAGGGGCAGGCGCGGGGTTGGCTAATGAACTTGCCACCCGCGTCAGTCCACTCCTGGGAGGATTTGTGCCAACAGTTCACCATGAACTTTCAGGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTACACGCAGTACAGCGAAGGGATGATGAGTCACTTCGCTCGTACATTCAGCGGTTCTGTCAAATCCGCAACACCATACCGTGCATCCCTGCACACGCGGTAATCTACGCGTTCAGGGGGGGCGTGCGGCACAACAGCATGCTCGAAAAGATCGCCTCCAAGGAGCCCCAGACTACCGCGGAGCTTTTTCAGCTCGCGGACCGAGTGGCTCGCAAGGAGGAGGCCTGGACTTGGAACCCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCAGACAGGGCGGCGTGACAGGAGGAGGAAGAAGAGGTCAATCCATTCCGACGACGAGGGTCATGTCCTCGCCGTCGAGGGCGCTTCGCGGGCCACCCAAAAGGGGAGGCCTGCGAGCGACAAAAAGAAAAAGGCCGGCGCTCCCAGCAGGGAGCACCCAGCCGGCAAGTGGTGCACCGTCCACAACACCTCCCTCCACGACCTCGTGGACTGTCGCGCAGTCAAAAGTTTGGCAGAGCGAACGAGGAAGTGGGAGGAGGAGAGGAGGCAGGAGCGCCGTGAGGGCAGGTCCCCGGCGGTTCCCTCCGGTAATCGGCGAAGTGAGGCCAAGCAGAATGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTAAACCCTCGTCCAGGAATCAGCCGAGGCACACAATAACAAATTGA
More
|
|||||||
| Protein seq | MAEQAKAHDLSPSVSGDDGEPNPRRRARTPPPPPRQSPKRGEALERVERSATSPIAGDGEERRDGERRLLVYGDGSTPQGALQAAGALLRHPPVVPDPESPAQRWLDDVAKLVMTARQRLDAGGRSSATKASGAATTGSASSRRRARRAAAAVRHSAATPSSTPSTREDLRGGPDARTSIERRRNDRSAPHATEGASSSRVSPQHGRGNQPSVPPVGGVGCRAFVASLRNVRWPPRFRPTIAEKYDGSVNPAEFLQVYTTGIEAAGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRRDDESLRSYIQRFCQIRNTIPCIPAHAVIYAFRGGVRHNSMLEKIASKEPQTTAELFQLADRVARKEEAWTWNPSGSGVAASAAPGSAAQTGRRDRRRKKRSIHSDDEGHVLAVEGASRATQKGRPASDKKKKAGAPSREHPAGKWCTVHNTSLHDLVDCRAVKSLAERTRKWEEERRQERREGRSPAVPSGNRRSEAKQNVTPGISIQNSKRLHVCKPSSRNQPRHTITN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0010095 | 0.2855915 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g05850 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001450 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0534800 | SBH | 0 | 0.00304 | 0.0044425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0095100 | SBH | 0.0029075 | 0.0391935 | 0.004104 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001380 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001380 | SBH | 0.0 | 0.0 | 0.0 |
