Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0001380 | OGI:06034170 | 3/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:1070908-1071717 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctataggccgcgcgcccagttggaccccagcactccgcgcctaccgttcttcgtgcttggccgccatggtgtaggagtcgtcggaggcgtgagatgggttcgccccgtggtcgggggaggagcctgcagggtacgcggttgcgaagtctgcaccctggtcacgaccggagccccttgcacctccctcgcacgcgggggcagcGggggcaagcccctggcggctctccgccgcatgttctcttcttctccgcgggcgtaCtcttctaacttgtccatcaacttctccacagaagtgatgtgcttgcgtgacagtttgctgaagaactccgtgccctcgagcaccccttgcttggcggcatcgatgatggtggagtctgagagcccgcggatctgtgacttggcggccgtgaagtgcctaaagtagtcccggagcgactcctctaggcgctgcttaatggcaaagaggttgcccgccgtcatgggctcaacgaaggtgccttggaaattattgcagaaagcctggcggagctgCccccaggtactcatcgaaTcggggggcagcgaccaaaaccaacgctgagccacgtcgtcgaggacaagcgggaagcacttggccatcgtggccggacttccagcgctagccttgatggcgagggcgtagttcttgacgaattctgcagggtcggagtctccccggtacttggaaagcttgggcggccgaaaccctggggggtacagctcctcctgcagctgccacgtcagcggggactcgaggttttcggtcggcggcggacgcgccatgcaccccat
More
|
||||||||||
| CDS seq | atggggtgcatggcgcgtccgccgccgaccgaaaacctcgagtccccgctgacgtggcagctgcaggaggagctgtaccccccagggtttcggccgcccaagctttccaagtaccggggagactccgaccctgcagaattcgtcaagaactacgccctcgccatcaaggctagcgctggaagtccggccacgatggccaagtgcttcccgcttgtcctcgacgacgtggctcagcgttggttttggtcgctgccccccgAttcgatgagtacctggggGcagctccgccaggctttctgcaataatttccaaggcaccttcgttgagcccatgacggcgggcaacctctttgccattaagcagcgcctagaggagtcgctccgggactactttaggcacttcacggccgccaagtcacagatccgcgggctctcagactccaccatcatcgatgccgccaagcaaggggtgctcgagggcacggagttcttcagcaaactgtcacgcaagcacatcacttctgtggagaagttgatggacaagttagaagaGtacgcccgcggagaagaagagaacatgcggcggagagccgccaggggcttgccccCgctgcccccgcgtgcgagggaggtgcaaggggctccggtcgtgaccagggtgcagacttcgcaaccgcgtaccctgcaggctcctcccccgaccacggggcgaacccatctcacgcctccgacgactcctacaccatggcggccaagcacgaagaacggtaggcgcggagtgctggggtccaactgggcgcgcggcctatag
More
|
||||||||||
| Protein seq | MGCMARPPPTENLESPLTWQLQEELYPPGFRPPKLSKYRGDSDPAEFVKNYALAIKASAGSPATMAKCFPLVLDDVAQRWFWSLPPDSMSTWGQLRQAFCNNFQGTFVEPMTAGNLFAIKQRLEESLRDYFRHFTAAKSQIRGLSDSTIIDAAKQGVLEGTEFFSKLSRKHITSVEKLMDKLEEYARGEEENMRRRAARGLPPLPPRAREVQGAPVVTRVQTSQPRTLQAPPPTTGRTHLTPPTTPTPWRPSTKNGRRGVLGSNWARGL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0001380 | OsLima_06g0001380.01 | Chr06 | 1070908 | 1071717 | - | NAM | ||
| CDS seq | atggggtgcatggcgcgtccgccgccgaccgaaaacctcgagtccccgctgacgtggcagctgcaggaggagctgtaccccccagggtttcggccgcccaagctttccaagtaccggggagactccgaccctgcagaattcgtcaagaactacgccctcgccatcaaggctagcgctggaagtccggccacgatggccaagtgcttcccgcttgtcctcgacgacgtggctcagcgttggttttggtcgctgccccccgAttcgatgagtacctggggGcagctccgccaggctttctgcaataatttccaaggcaccttcgttgagcccatgacggcgggcaacctctttgccattaagcagcgcctagaggagtcgctccgggactactttaggcacttcacggccgccaagtcacagatccgcgggctctcagactccaccatcatcgatgccgccaagcaaggggtgctcgagggcacggagttcttcagcaaactgtcacgcaagcacatcacttctgtggagaagttgatggacaagttagaagaGtacgcccgcggagaagaagagaacatgcggcggagagccgccaggggcttgccccCgctgcccccgcgtgcgagggaggtgcaaggggctccggtcgtgaccagggtgcagacttcgcaaccgcgtaccctgcaggctcctcccccgaccacggggcgaacccatctcacgcctccgacgactcctacaccatggcggccaagcacgaagaacggtaggcgcggagtgctggggtccaactgggcgcgcggcctatag
More
|
|||||||
| Protein seq | MGCMARPPPTENLESPLTWQLQEELYPPGFRPPKLSKYRGDSDPAEFVKNYALAIKASAGSPATMAKCFPLVLDDVAQRWFWSLPPDSMSTWGQLRQAFCNNFQGTFVEPMTAGNLFAIKQRLEESLRDYFRHFTAAKSQIRGLSDSTIIDAAKQGVLEGTEFFSKLSRKHITSVEKLMDKLEEYARGEEENMRRRAARGLPPLPPRAREVQGAPVVTRVQTSQPRTLQAPPPTTGRTHLTPPTTPTPWRPSTKNGRRGVLGSNWARGL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g15100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001450 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0115600 | RBH | 0.002261 | 0.002855 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0150800 | RBH | 0.0119355 | 0.0104 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0000020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0000020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G000020 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001380 | RBH | 0.0 | 0.0 | 0.0 |
