Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_05G0350700 OGI:05061650 | 14/16 Minghui 63 | MH63RS3 | HZAU Chr05:23753539-23754106
Gene Symbol -
DNA seq

CTAAGCGGCCGCCGCCTTCTTTGGCGACTTGGTGGTGGCCTTCTTGGGCGACTTGGGGGTCTTACCCTCCTTGGCCTCCTTGGCCGCGGCGGAGCCGGTCTTCTTGGGGAGCAGCACCGGGTTGATGTTGGGCAGCACCCCGCCGTGCGCGATGGTGACGCCGGCCAGCAGCTTCCCGAGCTCCTCGTCGTTGCGGATCGCCAGCAGCACGTGCCGCGGGATGATCCGGTTCTTCTTGTTGTCCCGCGCCGCGTTCCCCGCAAGCTCGAGCACCTAAAAAAAAATCCAAATCAGGCCGGCTACCGCGTCGAGGGTACGGGGCTGTGCGCATGCGCGGGCGCGGCCAAACCTCGGCGGCGAGGTACTCGAGGACGGCGGCGAGGTAGACGGGGGCGCCGGTGCCGATGCGCTGGGAGTAGCGGCCTTGCTTGAGGTAGCGGCCGATACGGCCGACGGGGAACTGGAGCCCGGCCTTGACGGAGCGGGACACCGGCTTCTTCTTCGGCCCGCCGCCGCCGCGGCGGCCGCCGGCGCCGGCCTTCTTGGGCACCTTCGCTCCCACCTCCAT

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CDS seq

ATGGAGGTGGGAGCGAAGGTGCCCAAGAAGGCCGGCGCCGGCGGCCGCCGCGGCGGCGGCGGGCCGAAGAAGAAGCCGGTGTCCCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGCAAGGCCGCTACTCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTCGAGCTTGCGGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGCGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGGGTGCTGCCCAACATCAACCCGGTGCTGCTCCCCAAGAAGACCGGCTCCGCCGCGGCCAAGGAGGCCAAGGAGGGTAAGACCCCCAAGTCGCCCAAGAAGGCCACCACCAAGTCGCCAAAGAAGGCGGCGGCCGCTTAG

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Protein seq

MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA

Function Probable histone H2A.4 [UniProtKB/Swiss-Prot:Q6L500]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_05G0350700 OsMH63_05T0350700.1 Chr05 23753539 23754106 - maker
CDS seq

ATGGAGGTGGGAGCGAAGGTGCCCAAGAAGGCCGGCGCCGGCGGCCGCCGCGGCGGCGGCGGGCCGAAGAAGAAGCCGGTGTCCCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGCAAGGCCGCTACTCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTCGAGCTTGCGGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGCGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGGGTGCTGCCCAACATCAACCCGGTGCTGCTCCCCAAGAAGACCGGCTCCGCCGCGGCCAAGGAGGCCAAGGAGGGTAAGACCCCCAAGTCGCCCAAGAAGGCCACCACCAAGTCGCCAAAGAAGGCGGCGGCCGCTTAG

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Protein seq

MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 128.2373925 178.232826 630.7250365

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0461400 RBH 5.520901 13.501151 33.490776
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g38640 RBH 3.625367 8.795889 8.350696
Nipponbare | IRGSP 1.0 | RAP-db Os05g0461400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0019940 RBH 4.927078 56.667294 27.568716
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0019870 RBH 2.106452 16.227840 8.511820
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0019760 RBH 14.799626 61.203102 25.891663
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0019760 RBH 1.561074 1.680632 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0019890 RBH 36.623058 70.583748 58.341286
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0162100 RBH 306.3256835 48.7912865 82.708656
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0019480 RBH 1.728255 3.022707 4.360311
Zhenshan 97 | ZS97RS3 | HZAU NA NA NA NA NA
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0019720 RBH 1.372552 1.290251 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0019700 RBH 4.317554 69.643501 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0019770 RBH 43.412884 71.116737 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0019860 RBH 6.037981 5.982892 9.255943
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G019350 RBH 4.018864 16.545195 15.065279
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0019710 RBH 7.792243 43.407024 19.255379
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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