Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsMH63_05G0350700 | OGI:05061650 | 14/16 | Minghui 63 | MH63RS3 | HZAU | Chr05:23753539-23754106 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | CTAAGCGGCCGCCGCCTTCTTTGGCGACTTGGTGGTGGCCTTCTTGGGCGACTTGGGGGTCTTACCCTCCTTGGCCTCCTTGGCCGCGGCGGAGCCGGTCTTCTTGGGGAGCAGCACCGGGTTGATGTTGGGCAGCACCCCGCCGTGCGCGATGGTGACGCCGGCCAGCAGCTTCCCGAGCTCCTCGTCGTTGCGGATCGCCAGCAGCACGTGCCGCGGGATGATCCGGTTCTTCTTGTTGTCCCGCGCCGCGTTCCCCGCAAGCTCGAGCACCTAAAAAAAAATCCAAATCAGGCCGGCTACCGCGTCGAGGGTACGGGGCTGTGCGCATGCGCGGGCGCGGCCAAACCTCGGCGGCGAGGTACTCGAGGACGGCGGCGAGGTAGACGGGGGCGCCGGTGCCGATGCGCTGGGAGTAGCGGCCTTGCTTGAGGTAGCGGCCGATACGGCCGACGGGGAACTGGAGCCCGGCCTTGACGGAGCGGGACACCGGCTTCTTCTTCGGCCCGCCGCCGCCGCGGCGGCCGCCGGCGCCGGCCTTCTTGGGCACCTTCGCTCCCACCTCCAT
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CDS seq | ATGGAGGTGGGAGCGAAGGTGCCCAAGAAGGCCGGCGCCGGCGGCCGCCGCGGCGGCGGCGGGCCGAAGAAGAAGCCGGTGTCCCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGCAAGGCCGCTACTCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTCGAGCTTGCGGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGCGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGGGTGCTGCCCAACATCAACCCGGTGCTGCTCCCCAAGAAGACCGGCTCCGCCGCGGCCAAGGAGGCCAAGGAGGGTAAGACCCCCAAGTCGCCCAAGAAGGCCACCACCAAGTCGCCAAAGAAGGCGGCGGCCGCTTAG
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Protein seq | MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA |
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Function | Probable histone H2A.4 [UniProtKB/Swiss-Prot:Q6L500] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsMH63_05G0350700 | OsMH63_05T0350700.1 | Chr05 | 23753539 | 23754106 | - | maker | ||
CDS seq | ATGGAGGTGGGAGCGAAGGTGCCCAAGAAGGCCGGCGCCGGCGGCCGCCGCGGCGGCGGCGGGCCGAAGAAGAAGCCGGTGTCCCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGTATCGGCCGCTACCTCAAGCAAGGCCGCTACTCCCAGCGCATCGGCACCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTCGAGCTTGCGGGGAACGCGGCGCGGGACAACAAGAAGAACCGGATCATCCCGCGGCACGTGCTGCTGGCGATCCGCAACGACGAGGAGCTCGGGAAGCTGCTGGCCGGCGTCACCATCGCGCACGGCGGGGTGCTGCCCAACATCAACCCGGTGCTGCTCCCCAAGAAGACCGGCTCCGCCGCGGCCAAGGAGGCCAAGGAGGGTAAGACCCCCAAGTCGCCCAAGAAGGCCACCACCAAGTCGCCAAAGAAGGCGGCGGCCGCTTAG
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Protein seq | MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 128.2373925 | 178.232826 | 630.7250365 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0461400 | RBH | 5.520901 | 13.501151 | 33.490776 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38640 | RBH | 3.625367 | 8.795889 | 8.350696 |
Nipponbare | IRGSP 1.0 | RAP-db | Os05g0461400 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019940 | RBH | 4.927078 | 56.667294 | 27.568716 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019870 | RBH | 2.106452 | 16.227840 | 8.511820 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019760 | RBH | 14.799626 | 61.203102 | 25.891663 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019760 | RBH | 1.561074 | 1.680632 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019890 | RBH | 36.623058 | 70.583748 | 58.341286 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0162100 | RBH | 306.3256835 | 48.7912865 | 82.708656 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019480 | RBH | 1.728255 | 3.022707 | 4.360311 |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019720 | RBH | 1.372552 | 1.290251 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019700 | RBH | 4.317554 | 69.643501 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019770 | RBH | 43.412884 | 71.116737 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019860 | RBH | 6.037981 | 5.982892 | 9.255943 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019350 | RBH | 4.018864 | 16.545195 | 15.065279 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019710 | RBH | 7.792243 | 43.407024 | 19.255379 |