Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_05g0019860 | OGI:05061650 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr05:23588268-23591508 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaaaaagatggcccaggtggaagcgtggagccatcgataatttggagcgaaaattcagcctgaaggcaagcacaacaggaaaaaaaaaaacccagcgcagcgccgtgcgttgtgcgaggcgtggccatagcagctggagagcagatcgaccgaggcgccggtgaacgtgttcgatagagtcgccgacaacaggtcaccgctgaagcccagcatccagccgccggcgaggccgtgccaaggaggaaaaggactcggcgcctggagctggaccctcgtgagtaaagtagcagcagtggaacagactcgtcaccgggcggagggcgatccccacgacgggcaggtcggcgtgctcggcgatcgtggtcatgctcaggcggcaggtcggacacaacattacgagctcagcccccatgaacattacgagctcaacacaagaaacattccaggatcacaattgagccaatttctcagtgacagaagtaaaaattgtacaaaaacacgcacatactccatcaattaagagggattgctagaagcattgaaataccactcatgaacttccgaatcAaaaaaaaaaaaagagaggataaataataacatgggattataccccttgtaaacaaatgatcaggtgcaaattacaaattatcacgagtaatatcaaaatcagagatgtattattatgagaacactaaatacagtgccctcgtttaataactacacgagcattcatataaacaagggctcccatcggttgccattttacctaaaatggcttatttggcttattagaaaattaaaattaatttataactaaaacttttgtagatttgttcgtagcgacttaaaagccaaaattaacaaaaattacgttaaaagcatttcaaaatcaacttcaaaattaagttcaaaaattcaaattttggcttattctttggctgtttaggccaaacgatggggctgaaggtcaagcaaatcagctcgttatcttactcttttttttcctaccaaatgtatttgaaaattaaaaacggatttccaagtgactgttccagaattccaaacaactccaaggttccaaccccatcgaacaaatcgaatgcaaaagtacaacataagtgcataactgtcaagcaacaaattggagcatacgaacatttttttctcgaatgcacaaaagaattgagcgtcaatatatacaaacatgcctctgtttttaccaaactactttagaaaaatcaaatacaaatatcatcagaagttatacctactgacttttcatctttaaagcacaacaattcacataccatgtgaccaaattcaggtaaatttagaatttcatatcctacctacttaacaagtagctactagcactaacattcacatttcggacacaacagataatagcgcatattagctaggtgcaagttggccaatcacaaacattacaatgatcaatcaacaaacagaacaagatgaaaccgaatcaacaatcaccagacttaacgtcaccacatttaagctcctgtccattttaaactacaataaatcataagacagtaaaatggcattatcgcaacttgacacttatgcaagtatcagcaaataagtaatagtattatcacaactaactaaacacttatgcaagtagacaacaaataggtgataaatttatgataactaactaaatacttatgcaagtaaacaaaaatgtgttataacattatcataactaaactcatttgcaagtacacaaattaggaagacattaacaaaaagcaccaactgtaaacattaactactagtgaacatcgcactaccacagcatataaatcagtcctattgcaagcaaggaggcatggcattgcatatgttcctataaccacaattccctctgttgcacctgctgcaagctgcttatctaattacattcttacgttgatgtcacaatttccgcttacgacatacatacctttccatattccagcaaactccacaatgttgggatgcaattcatgaatacaatctcataatgtatgtaaagcaatcacattacatgatatcaagctaaaaagtgcgccactacataacatgagaaacagcatttccccaaccaccccaagcaccccaaatggcaatgctattttcaataattacccaaacacaaacgaagaaccaaataacccaccagcaggcatatatgtgcatccactaccaaacacagatcaattgttcgaaattatccaaatcttaacaatattattacaggcagcatctaacaattcacagttcccccatccctctgcccagaccacactcctcgaccctacaccggtgttaacctacacgggtacaaactgattggcttgactgtccatctattcagaaaacaccacaaattacgtacaaacaaccgaaccgattcacgacaaatgatatagcatgcaacgaagacgatgatgatgacgattgacaacagctaggagcgtttcagctcagacaagagggagagggaagcgggggacaccaccaccaagccggcattgcgtgtgccctaagcggccgccgccttctttggcgacttggtggtggccttcttgggcgacttgggggtcttaccctccttggcctccttggccgcggcggagccggtcttcttggggagcagcaccgggttgatgttgggcagcaccccgccgtgcgcgatggtgacgccggccagcagcttcccgagctcctcgtcgttgcggatcgccagcagcacgtgccgcgggatgatccggttcttcttgttgtcccgcgccgcgttccccgcaagctcgagcacctaaaaaaaaatccaaatcaggccggctaccgcgtcgagggtacggggctgtgcgcatgcgcgggcgcggccaaacctcggcggcgaggtactcgaggacggcggcgaggtagacgggggcgccggtgccgatgcgctgggagtagcggccttgcttgaggtagcggccgatacggccgacggggaactggagcccggccttgacggagcgggacaccggcttcttcttcggcccgccgccgccgcggcggccgccggcgccggccttcttgggcaccttcgctcccacctccatcgatcgcgacgagctcctcctccccaagctttctccctcttctgttttgttcgatttttttttcttcctattttttttccttttgggggaggagtgcgtgtgcgtttgtgttttcat
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| CDS seq | atggaggtgggagcgaaggtgcccaagaaggccggcgccggcggccgccgcggcggcggcgggccgaagaagaagccggtgtcccgctccgtcaaggccgggctccagttccccgtcggccgtatcggccgctacctcaagcaaggccgctactcccagcgcatcggcaccggcgcccccgtctacctcgccgccgtcctcgagtacctcgccgccgaggtgctcgagcttgcggggaacgcggcgcgggacaacaagaagaaccggatcatcccgcggcacgtgctgctggcgatccgcaacgacgaggagctcgggaagctgctggccggcgtcaccatcgcgcacggcggggtgctgcccaacatcaacccggtgctgctccccaagaagaccggctccgccgcggccaaggaggccaaggagggtaagacccccaagtcgcccaagaaggccaccaccaagtcgccaaagaaggcggcggccgcttag
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| Protein seq | MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA |
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| Function | Probable histone H2A.4 [UniProtKB/Swiss-Prot:Q6L500] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019860 | OsLiXu_05g0019860.02 | Chr05 | 23588268 | 23590567 | - | NAM | ||
| CDS seq | atgggggaactgagcttaaatgtggtgacgttaagtctgctcgtaatgttcatgggggctgagctcgtaatgttgtgtccgacctgccgcctgagcatgaccacgatcgccgagcacgccgacctgcccgtcgtggggatcgccctccgcccgctccaggcgccgagtccttttcctccttggcacggcctcgccggcggctggatgctgggcttcagcggtgacctgttgtcggcgactctatcgaacacgttcaccggcgcctcggtcgatctgctctccagctgctatggccacgcctcgcacaacgcacggcgctgcgctgggctgaattttcgctccaaattatcgatggctccacgcttccacctgggccatcttttttag
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| Protein seq | MGELSLNVVTLSLLVMFMGAELVMLCPTCRLSMTTIAEHADLPVVGIALRPLQAPSPFPPWHGLAGGWMLGFSGDLLSATLSNTFTGASVDLLSSCYGHASHNARRCAGLNFRSKLSMAPRFHLGHLF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019860 | OsLiXu_05g0019860.01 | Chr05 | 23590287 | 23591508 | - | NAM | ||
| CDS seq | atggaggtgggagcgaaggtgcccaagaaggccggcgccggcggccgccgcggcggcggcgggccgaagaagaagccggtgtcccgctccgtcaaggccgggctccagttccccgtcggccgtatcggccgctacctcaagcaaggccgctactcccagcgcatcggcaccggcgcccccgtctacctcgccgccgtcctcgagtacctcgccgccgaggtgctcgagcttgcggggaacgcggcgcgggacaacaagaagaaccggatcatcccgcggcacgtgctgctggcgatccgcaacgacgaggagctcgggaagctgctggccggcgtcaccatcgcgcacggcggggtgctgcccaacatcaacccggtgctgctccccaagaagaccggctccgccgcggccaaggaggccaaggagggtaagacccccaagtcgcccaagaaggccaccaccaagtcgccaaagaaggcggcggccgcttag
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| Protein seq | MEVGAKVPKKAGAGGRRGGGGPKKKPVSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_05g0019860 | OsLiXu_05g0019860.03 | Chr05 | 23589273 | 23589855 | - | IsoSeq | ||
| CDS seq | atgcacttatgttgtacttttgcattcgatttgttcgatggggttggaaccttggagttgtttggaattctggaacagtcacttggaaatccgtttttaattttcaaatacatt |
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| Protein seq | MHLCCTFAFDLFDGVGTLELFGILEQSLGNPFLIFKYI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.037981 | 5.982892 | 9.255943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0461400 | RBH | 5.520901 | 13.501151 | 33.490776 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38640 | RBH | 3.625367 | 8.795889 | 8.350696 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0461400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019940 | RBH | 4.927078 | 56.667294 | 27.568716 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019870 | RBH | 2.106452 | 16.227840 | 8.511820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019760 | RBH | 14.799626 | 61.203102 | 25.891663 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019760 | RBH | 1.561074 | 1.680632 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019890 | RBH | 36.623058 | 70.583748 | 58.341286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0350700 | RBH | 128.2373925 | 178.232826 | 630.7250365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019480 | RBH | 1.728255 | 3.022707 | 4.360311 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019720 | RBH | 1.372552 | 1.290251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019700 | RBH | 4.317554 | 69.643501 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019770 | RBH | 43.412884 | 71.116737 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012730 | RBH | 2.062258 | 11.500705 | 2.276711 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0001020 | RBH | 0.0 | 17.026499 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019350 | RBH | 4.018864 | 16.545195 | 15.065279 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019710 | RBH | 7.792243 | 43.407024 | 19.255379 |
