Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_05G0001600 OGI:05000350 | 6/16 Minghui 63 | MH63RS3 | HZAU Chr05:159378-160385
Gene Symbol -
DNA seq

ATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAATCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCGTGCAGAAAACAGAGGTGTTTGCCTTGTGTTATTGTCATTGTCTAGTAATGTTGATTTCATCCAGTGAAAGGGGTGAGAATGCTGATTGCCTGGTTGTCTGGAACATGCAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAATTACAAAGGTACGTGTGGTGAAATTCGCCTCTATAGAGTCTTGTCGAACACAAGAGATATGAGTTGTGTTAATGAGTGTTATATATTGTTTGGGAATTTTGCCGTATGCAGGAGTGAAGTTTGGACGCCTGTTGATTGTTTGCTACAAATATATGCTGAAGTTGATCTCGCACATTCACCAGCTGAATTAAAGCGCTGAGATCTGGGTTAGCTTTTTTTTTGGTTTATCTCAAGAGTATTGTGGGTAAGGAAGGTGGTGTGTATGTTGGAACTGTGAGGAGTCTACTAAAATGAAGAAAGCATTCAGTTGATCATTCTTTTCAGGAAAGATTAGTTGCAAAATTCTGTGCGTAAGCTTGCTGTTGTAACTGATGGGCGTTATTGTGTTGATGGATGGGAGATTAGGGGTAGTTGGATGTGCTGTTTAATTTAGGTGCTGGTATTAATTAAGTAGGCAGTATGTGGTTAGAACTCTGCAGTTAAGATGAGGTAGT

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CDS seq

ATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAATCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCGTGCAGAAAACAGAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAATTACAAAGGAGTGA

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Protein seq

MQPCGGEEEGPDQLSSFDLYIAFKFSSADVKSELDKYLDEPVIPRAVDFDIIDWWKIMGKRFPTLQMLARDILAVPVSRVVSESAFSIAGRVLSPQRSNLLPDTLEALMCSQDWLRAENRGAGSSGLLSCLTCLEDADVITKE

Function Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_05G0001600 OsMH63_05T0001600.1 Chr05 159378 160385 + maker
CDS seq

ATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAATCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCGTGCAGAAAACAGAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAATTACAAAGGAGTGA

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Protein seq

MQPCGGEEEGPDQLSSFDLYIAFKFSSADVKSELDKYLDEPVIPRAVDFDIIDWWKIMGKRFPTLQMLARDILAVPVSRVVSESAFSIAGRVLSPQRSNLLPDTLEALMCSQDWLRAENRGAGSSGLLSCLTCLEDADVITKE

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 4.0278805 6.175946 4.748405

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_05g0102300 RBH 1.737818 1.098816 1.571230
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g01190 RBH 1.026049 0.705322 0.418080
Nipponbare | IRGSP 1.0 | RAP-db Os05g0102300 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0000170 RBH 1.316945 2.657540 5.490656
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0001800 RBH 4.2323775 7.6293615 10.4613205
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0000180 RBH 0.000000 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0000160 RBH 0.000000 0.000000 0.000000
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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