Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_05g0102300 | OGI:05000350 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr05:145073-147497 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAAGAGGAAGAAAATCGACAGCAAGTGGAAAGCCGAGTGCCTATGGTGCCATAAGAGGCTCGGAGGGGACACTAAGAATGGCACCAAACATTTGCACGATCATCTCAGCAAATGTCCTCGTCGCAGGAGTAATAAAGTCAGCAAGCCAACTCCCTCCAAATGTACAAAGGATATTGATCAGGAACCCACTGTTGCTTCTTTAGAAAGCTCCACCTTTAGCCAGGATGTTGCCAGGATGGAGCTTGCGAGAATGATTATCTTGCATGAATATCCTTTGTCTATTATGGAGCATTACGGTTTCCAAAGGTTTGTTAGGGCTCTTCAACCATTGTTCCAGCTGGTTCCCAACAGTAGTCTTAAGAAGGATGTTATCAGCATTTATGAGACGGAGAGGGTCAGAACCAGGGAAATTTTGTGGGAGGCTAAAGGTCGGATTGCAATAACAGCAGATATATGGACATCAGATGATCAAAATAGAGGTTATGTGGCTGTCAGAGCTCATTTTATCGACCAATCCTGGACATTCCAGTGCCGTCTACTGAGGTGTGTTCCTTTTTCATTATTTTTCGAGCGCATAGATGTGTGTATGTATATTTTCAAATATAGTTGCAGTTTTCTCGGTCCAAAGTTCTATTCAGACTATTTTAATGTAAAAACTTATTGTGCTTTGATTGCCACATGCAGCTTTATACATGTGCCATGGCCGCATACAGCTCAAGCAATTTCTGAAACTCTGTCTTCTTGTTTGAACGAATGGAATCTTGGAAGGAGGGTATCAATGGTGATGGCTGATGATTGTTCTACAGATGATACGGTTACGGGGCTCTTAAAGCAAAGGCTGGATACCGAACAACTTTTGTTAGGTGGGTCTTTGCTGAACATGAGATGCTGCGCCTATGTGCTAAGTAGAATTGCCAATAGTTGCCTGGGTGTGATGGGAGGTGCTGTTGATAGGATCCGCGCCAGTGTTGATTTCTGGACAGCAACAACTGAAAGAGATGTAGTGTTTGCTGATGTTGCTCGTGGTTTGAATGTTAATCTCGACAAGAAGTTGACTCTTGATTGTAATAATAGATGGTACTCTACCTTATCCATGTTAAATGTTGCCATAAGCTACAAGCAAGTCTTTGATCACTTAAGGCAAATAGAGGAACAGTATATTTGTGCTCCTGATGATGATGACTGGAAATTAGCAAAAGAGGTCTGCAGTAAGTTGAAACTGTTTTCTGACATTGCAGAACTAATTTCAGAGGCTAAGTATGTTACTGCTAATATGTACTTCCCCAAGATTTGTGGAATTCGGATGGCCATGAGGAGATGGCCTGGGTGTGAGGATGAACTGATAGGAAGGATGAGAAATGAAATAGCCGAATTGTTTGAGAAATATTGCGTTGAAGTTCATGATCTCATGGCTGTGGCAACTGTCCTAGACCCCAGATATAAGCTTGAGCTACTGCAGTTTTATTTCCCCTCAATTTTTGGTGATGAGGCATACAATGAGATAAATAGAGTCCGGCAGCTCTGTTATGATTTGATCAAACAGTATCAGGGTCCCCAATCAAAAGTCGGTGCAATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAAGCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCATGCAGAAAACAGAGGTGTTTGCCTTGTGTTATTGTCATTGTCTAGTAATGTTGATTTCATCCAGTGAAAGGGGTGAGAATGCTGATTGCCTGGTTGTCTGGAACATGCAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAACTACAAAGGTACGTGTGGTGAAATTCGCCTCTATAGAGTCTTGTCGAACACAAGAGATATGAGTTGTGTTAATGAGTGTTATATATTGTTTGGGAATTTTGCCGTATGCAGGAGTGAAGTTTGGACGCCTGTTGATTGTTTGCTACAAATATATGCTGAAGTTGATCTCGCACATTCACCAGCTGAATTAAAGCGCTGAGATCTGGGTTAGCTTTTTTTTTGGTTTATCTCAAGAGTATTGTGGGTAAGGAAGGTGGTGTGTATGTTGGAACTGTGAGGAGTCTACTAAAATGAAGAAAGCATTCAGTTGATCATTCTTTTCAGGAAAGATTAGTTGC
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| CDS seq | ATGGAGCTTGCGAGAATGATTATCTTGCATGAATATCCTTTGTCTATTATGGAGCATTACGGTTTCCAAAGGTTTGTTAGGGCTCTTCAACCATTGTTCCAGCTGGTTCCCAACAGTAGTCTTAAGAAGGATGTTATCAGCATTTATGAGACGGAGAGGGTCAGAACCAGGGAAATTTTGTGGGAGGCTAAAGGTCGGATTGCAATAACAGCAGATATATGGACATCAGATGATCAAAATAGAGGTTATGTGGCTGTCAGAGCTCATTTTATCGACCAATCCTGGACATTCCAGTGCCGTCTACTGAGCTTTATACATGTGCCATGGCCGCATACAGCTCAAGCAATTTCTGAAACTCTGTCTTCTTGTTTGAACGAATGGAATCTTGGAAGGAGGGTATCAATGGTGATGGCTGATGATTGTTCTACAGATGATACGGTTACGGGGCTCTTAAAGCAAAGGCTGGATACCGAACAACTTTTGTTAGGTGGGTCTTTGCTGAACATGAGATGCTGCGCCTATGTGCTAAGTAGAATTGCCAATAGTTGCCTGGGTGTGATGGGAGGTGCTGTTGATAGGATCCGCGCCAGTGTTGATTTCTGGACAGCAACAACTGAAAGAGATGTAGTGTTTGCTGATGTTGCTCGTGGTTTGAATGTTAATCTCGACAAGAAGTTGACTCTTGATTGTAATAATAGATGGTACTCTACCTTATCCATGTTAAATGTTGCCATAAGCTACAAGCAAGTCTTTGATCACTTAAGGCAAATAGAGGAACAGTATATTTGTGCTCCTGATGATGATGACTGGAAATTAGCAAAAGAGGTCTGCAGTAAGTTGAAACTGTTTTCTGACATTGCAGAACTAATTTCAGAGGCTAAGTATGTTACTGCTAATATGTACTTCCCCAAGATTTGTGGAATTCGGATGGCCATGAGGAGATGGCCTGGGTGTGAGGATGAACTGATAGGAAGGATGAGAAATGAAATAGCCGAATTGTTTGAGAAATATTGCGTTGAAGTTCATGATCTCATGGCTGTGGCAACTGTCCTAGACCCCAGATATAAGCTTGAGCTACTGCAGTTTTATTTCCCCTCAATTTTTGGTGATGAGGCATACAATGAGATAAATAGAGTCCGGCAGCTCTGTTATGATTTGATCAAACAGTATCAGGGTCCCCAATCAAAAGTCGGTGCAATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAAGCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCATGCAGAAAACAGAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAACTACAAAGGAGTGA
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| Protein seq | MELARMIILHEYPLSIMEHYGFQRFVRALQPLFQLVPNSSLKKDVISIYETERVRTREILWEAKGRIAITADIWTSDDQNRGYVAVRAHFIDQSWTFQCRLLSFIHVPWPHTAQAISETLSSCLNEWNLGRRVSMVMADDCSTDDTVTGLLKQRLDTEQLLLGGSLLNMRCCAYVLSRIANSCLGVMGGAVDRIRASVDFWTATTERDVVFADVARGLNVNLDKKLTLDCNNRWYSTLSMLNVAISYKQVFDHLRQIEEQYICAPDDDDWKLAKEVCSKLKLFSDIAELISEAKYVTANMYFPKICGIRMAMRRWPGCEDELIGRMRNEIAELFEKYCVEVHDLMAVATVLDPRYKLELLQFYFPSIFGDEAYNEINRVRQLCYDLIKQYQGPQSKVGAMQPCGGEEEGPDQLSSFDLYIAFKFSSADVKSELDKYLDEPVIPRAVDFDIIDWWKIMGKRFPTLQMLARDILAVPVSRVVSESAFSIAGRVLSPQRSKLLPDTLEALMCSQDWLHAENRGAGSSGLLSCLTCLEDADVTTKE |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_05g0102300 | OsNip_05t0102300-01 | Chr05 | 145073 | 147497 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCTTGCGAGAATGATTATCTTGCATGAATATCCTTTGTCTATTATGGAGCATTACGGTTTCCAAAGGTTTGTTAGGGCTCTTCAACCATTGTTCCAGCTGGTTCCCAACAGTAGTCTTAAGAAGGATGTTATCAGCATTTATGAGACGGAGAGGGTCAGAACCAGGGAAATTTTGTGGGAGGCTAAAGGTCGGATTGCAATAACAGCAGATATATGGACATCAGATGATCAAAATAGAGGTTATGTGGCTGTCAGAGCTCATTTTATCGACCAATCCTGGACATTCCAGTGCCGTCTACTGAGCTTTATACATGTGCCATGGCCGCATACAGCTCAAGCAATTTCTGAAACTCTGTCTTCTTGTTTGAACGAATGGAATCTTGGAAGGAGGGTATCAATGGTGATGGCTGATGATTGTTCTACAGATGATACGGTTACGGGGCTCTTAAAGCAAAGGCTGGATACCGAACAACTTTTGTTAGGTGGGTCTTTGCTGAACATGAGATGCTGCGCCTATGTGCTAAGTAGAATTGCCAATAGTTGCCTGGGTGTGATGGGAGGTGCTGTTGATAGGATCCGCGCCAGTGTTGATTTCTGGACAGCAACAACTGAAAGAGATGTAGTGTTTGCTGATGTTGCTCGTGGTTTGAATGTTAATCTCGACAAGAAGTTGACTCTTGATTGTAATAATAGATGGTACTCTACCTTATCCATGTTAAATGTTGCCATAAGCTACAAGCAAGTCTTTGATCACTTAAGGCAAATAGAGGAACAGTATATTTGTGCTCCTGATGATGATGACTGGAAATTAGCAAAAGAGGTCTGCAGTAAGTTGAAACTGTTTTCTGACATTGCAGAACTAATTTCAGAGGCTAAGTATGTTACTGCTAATATGTACTTCCCCAAGATTTGTGGAATTCGGATGGCCATGAGGAGATGGCCTGGGTGTGAGGATGAACTGATAGGAAGGATGAGAAATGAAATAGCCGAATTGTTTGAGAAATATTGCGTTGAAGTTCATGATCTCATGGCTGTGGCAACTGTCCTAGACCCCAGATATAAGCTTGAGCTACTGCAGTTTTATTTCCCCTCAATTTTTGGTGATGAGGCATACAATGAGATAAATAGAGTCCGGCAGCTCTGTTATGATTTGATCAAACAGTATCAGGGTCCCCAATCAAAAGTCGGTGCAATGCAGCCTTGTGGGGGGGAGGAAGAGGGTCCAGATCAGTTATCTAGCTTCGATCTATATATCGCTTTCAAGTTCTCCAGTGCAGATGTCAAGTCAGAACTAGACAAATACTTGGACGAGCCTGTTATCCCTAGAGCAGTAGACTTTGACATAATAGATTGGTGGAAGATTATGGGGAAGAGGTTTCCAACTCTGCAGATGTTAGCAAGAGACATTTTAGCGGTTCCTGTCTCAAGGGTAGTTTCTGAATCGGCGTTTAGCATTGCTGGAAGGGTTTTGAGTCCACAGCGTAGCAAGCTTTTACCTGATACACTGGAGGCCTTGATGTGCTCACAAGATTGGCTTCATGCAGAAAACAGAGGTGCAGGATCGTCAGGGCTCTTGAGCTGCCTCACTTGCCTGGAAGATGCTGATGTAACTACAAAGGAGTGA
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| Protein seq | MELARMIILHEYPLSIMEHYGFQRFVRALQPLFQLVPNSSLKKDVISIYETERVRTREILWEAKGRIAITADIWTSDDQNRGYVAVRAHFIDQSWTFQCRLLSFIHVPWPHTAQAISETLSSCLNEWNLGRRVSMVMADDCSTDDTVTGLLKQRLDTEQLLLGGSLLNMRCCAYVLSRIANSCLGVMGGAVDRIRASVDFWTATTERDVVFADVARGLNVNLDKKLTLDCNNRWYSTLSMLNVAISYKQVFDHLRQIEEQYICAPDDDDWKLAKEVCSKLKLFSDIAELISEAKYVTANMYFPKICGIRMAMRRWPGCEDELIGRMRNEIAELFEKYCVEVHDLMAVATVLDPRYKLELLQFYFPSIFGDEAYNEINRVRQLCYDLIKQYQGPQSKVGAMQPCGGEEEGPDQLSSFDLYIAFKFSSADVKSELDKYLDEPVIPRAVDFDIIDWWKIMGKRFPTLQMLARDILAVPVSRVVSESAFSIAGRVLSPQRSKLLPDTLEALMCSQDWLHAENRGAGSSGLLSCLTCLEDADVTTKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.737818 | 1.098816 | 1.571230 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g01190 | RBH | 1.026049 | 0.705322 | 0.418080 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0102300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013220 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000170 | RBH | 1.316945 | 2.657540 | 5.490656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013140 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013230 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0001600 | RBH | 4.0278805 | 6.175946 | 4.748405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0001800 | RBH | 4.2323775 | 7.6293615 | 10.4613205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013170 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000180 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000160 | RBH | 0.000000 | 0.000000 | 0.000000 |
