Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0367700 | OGI:04071670 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:25291356-25292340 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTCCATGAATTCCTCAAAACGAGGCTCATCAAAATGCAAAATCTAAGACTACTATAAGACTACTAATAAAATAAGAAAAAAAATTCGAACGATGAAATTACCGCTCCCTAATATCCAACTGACTGATTAATTTCTTATAACGTACTCTATTTTTCTTTGCCAAATAAGCCAGCAAACGTTGACGTTTTCCCAAAAGTCTTCGGAGACCTCTTTCCGATGAAAAATCTTTTTTGTGTAATTCCAAATGTGAAGCAAGTCTCCGTATCTTATTGGTGAAACTGAATACTTGAAATTCAACAGAACCCCAGTTTTCTTCTTTTTCTTCTTTAACCATAAATCCAAAAATTTTTCTACCTCCTTTATTTTTCATGTATTTTTCTGATCAGGAAAAATAAAAAATTATGTTAGTTATTTTGAAGTTATTCTAATCTCGTACACACAAAAATTTGCAATTATTCATCTACTACTGGAATTTGGATTTATTTTATCGATGCAAATTGGATTTGGATAGAAGGGTACATTCTTTTATTTTAGATAGAAGAAAAGTTTCTTCTATCTAAAATAAAAGAATTTTGCTGATTTATTTATTGCTATATCCAATTTATGGAATTGATACACCGTTTAATTGATATCATTTAGCAAAATGAAACATAGCATATGCATCCATCTTTCGGCTCAAGAATTTCACGGGATAGAGATATGGTATAAAAAATAGGCTATTAAGTAACTCTAAATGAATTATGGATACATCTGTATCCTTAACATACTGAAACAACTGCCATTATTCGTATCAAACCAATAGCGATTCATACAAGTTAAATCTTCTAATCACTGGTGGGCCAATAATGAATTTTTTTGCATATGTATTAAGACGCTTGGCCTGATTTCGAAATTGTCCAGAGTTTTTTATGTAGTTTTCATTGCAAAATGATGGATCTCCTTCCGTAACTTTCCAATTACGAGTACGAGAATTGAAAGACAT
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| CDS seq | ATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCAGTGATTAGAAGATTTAACTTGTATGAATCGCTATTGAAGAAAAAGAAGAAAACTGGGGTTCTGTTGAATTTCAAGTATTCAGTTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGAATTACACAAAAAAGATTTTTCATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCAACATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAATAA |
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| Protein seq | MSFNSRTRNWKVTEGDPSFCNENYIKNSGQFRNQAKRLNTYAKKFIIGPPVIRRFNLYESLLKKKKKTGVLLNFKYSVSPIRYGDLLHIWNYTKKIFHRKEVSEDFWENVNILHFDEPRFEEFME |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0367700 | OsMH63_04T0367700-mRNA-1 | Chr04 | 25291356 | 25292340 | - | maker | ||
| CDS seq | ATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCAGTGATTAGAAGATTTAACTTGTATGAATCGCTATTGAAGAAAAAGAAGAAAACTGGGGTTCTGTTGAATTTCAAGTATTCAGTTTCACCAATAAGATACGGAGACTTGCTTCACATTTGGAATTACACAAAAAAGATTTTTCATCGGAAAGAGGTCTCCGAAGACTTTTGGGAAAACGTCAACATTTTGCATTTTGATGAGCCTCGTTTTGAGGAATTCATGGAATAA
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| Protein seq | MSFNSRTRNWKVTEGDPSFCNENYIKNSGQFRNQAKRLNTYAKKFIIGPPVIRRFNLYESLLKKKKKTGVLLNFKYSVSPIRYGDLLHIWNYTKKIFHRKEVSEDFWENVNILHFDEPRFEEFME |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 289.9665065 | 40.709234 | 76.574337 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16726 | RBH | 16.356398 | 15.236653 | 6.181803 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0366700 | RBH | 107.0539475 | 5.1701395 | 12.38464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017030 | RBH | 42.418522 | 20.548780 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
