Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16726 | OGI:04071670 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9102551-9103402 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGATGAGGATAATTAATTCGGTCGTTGCGGTCGGACTCTATTATGGGTTTCTGACCACATTCTCCATGGGTCCCTCTTAGATCTTCTTTCTCCAATCTTGGATTAGGGAAGAAGGAGATATTCGCGACTCCTGGTGGTTTCATTATGGGGCAGCTCATGATCTTCATATCGATCTATTATCCACCTCTGCATCTATTCTTTCTTAGCTAAACGGGTGGAAGATCCATCCAATTTGGTTATATCATGGACTCAAAAAACGGATCTGAATGTGACTGAAATGCACGATCTTCACAGGTATCACTTTTCACGATACCTAAAAGGTGGAATAGCGATTTTCGAACCATTTCCTATAAGAGAAAGGTTTCCATTACTTTGAGAAATGGATTCTATATCAAACTATAGCTATTGCATTAAAGAAGAAAAGAAACTAATAGAAGTCGAAGACGCGGAATGGTAGTGAATAGAGAGAAAGATTCTTCTGGTTTTCTTGTTCCTGAAAATATTCTATCTATCTCCTAGACGCCGTAGAGAATTGAGAATTTTCATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGATTTAACTTGTATGAATCGCTATTGGTTTGATACGAATAATGGCAGTTGTTTCAGTATGTTAAGGATACAGATGTATCCACAATTCATTTAGAGTTACTTAATAGCCTATTTCTTATACCATATCTCTATCCCGTGAAATTCTCGAG
More
|
||||||||||
| CDS seq | ATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGATTTAACTTGTATGAATCGCTATTGGTTTGA |
||||||||||
| Protein seq | MSFNSRTRNWKVTEGDPSFCNENYIKNSGQFRNQAKRLNTYAKKFIIGPPLIRRFNLYESLLV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16726 | LOC_Os04g16726.1 | Chr04 | 9102551 | 9103402 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTTTCAATTCTCGTACTCGTAATTGGAAAGTTACGGAAGGAGATCCATCATTTTGCAATGAAAACTACATAAAAAACTCTGGACAATTTCGAAATCAGGCCAAGCGTCTTAATACATATGCAAAAAAATTCATTATTGGCCCACCATTGATTAGAAGATTTAACTTGTATGAATCGCTATTGGTTTGA |
|||||||
| Protein seq | MSFNSRTRNWKVTEGDPSFCNENYIKNSGQFRNQAKRLNTYAKKFIIGPPLIRRFNLYESLLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 16.356398 | 15.236653 | 6.181803 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21388 | RBH | 13.112795 | 12.429654 | 5.500069 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0367700 | RBH | 289.9665065 | 40.709234 | 76.574337 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0366700 | RBH | 107.0539475 | 5.1701395 | 12.38464 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017720 | SBH | 37.692406 | 14.487440 | 46.931973 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
