Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0227000 | OGI:03070620 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:14746893-14748289 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACCATATATAACATAAGACTTCTCCCCCAATTCTGTTTAGTCGAGCTTCTCGATCTGTCATTATACCTCGAGAAGTAGAAAGAATAGCAATTCCCATTCCGCCCAAAACCTTAGGAATTCCTTGATAGTTGGCATAAATTCGTAAGCCAGGTCGGCTGATACGCTTTAAAAAGGTTCTAGTTCTATATATTCCCTTTCTAGTCTTTCTCTTTTGATGTCGCAAAGTTGAAACCAAGAAATATCTGTTACTTTCCTGATGTTTCCGAACACTTTCAATAAAACCCTCTCGTAGAAGTATTTTAACAATGTTTTCGGTAATATTTGTAGATACTACCCGAACAGTTCCTTTTTTATTCATGTCCGCGTTTCTTATAGAGGTTAGTAAATCAGCAATAGTGTCCTTGCCCATAAGACTCTAATTCTAGGTTCCTCCTAATTTTTCTATAATCAACATGTTCTCTTTTTTCTTTTCGTTTTGGATTCTAAAGCATATACGTGAAACACAATCTACTAATTTTTTATTTGATCTATATCTTGTCTACTAGTATTTATAATACTTCAGGAGCTAATGAAACTATTTTAGTAAAATTCAATTCTCTCAATTCCTCGGCGATCGCGCCAAAAACGCGAGTTCCTTTTGGATTTCCTTTTTGATCAATGATAACCGCTGCATTGTCGTCATAGCGTATTATTATACCGTCTTCGCATTTGAACTCTTTACATGTACGTACAATTACAGCTCGAATTACTTCGGATCTTTCTAGAGGCATTTGGGGCACTGCGTCTTTGATTACAGCAACAATAACATCACCAATACGAGCATATCGCTGATTACTAGCAGCTCCTATGACTCGAATACACATCAATTTTCGAGCTCCACTGTTATCTGCTACATTTAAAAGGGTCTGAGGTTGAATCATATTATTTTGATTTCAATTTGTTATTTCAATGCAAAAGGATGAAAGAAATATTGTCTTTCCAGAAAGAAGAACCTGGTTTTTTATTTTCAATACTACTTTTTTTTGGGGGGGGTTATATTTCTAACCGAAGAAATTGACTTCGTATGGGCATTTTGCTGGCAGCTATGGAAATAGCTACTCTAGCTACAGTTTCGGATACTCCGCCCATTTCATAAAGTATTCGACCTGGTTTAACAACGGCTACCCAATATTCGGGGGATCCCTTTCCCGAACCCATACGTGTTTCGGTCGGTCTTATTGTAACCGGTTTGTCGGGAAATATACGTACCCAGATTTTTCCACCACGACGTGCATATCGTGTCATTGCTCTTCGTCCTGCTTCTATCTGCCTCGCCGTAATCCAAGTGGGTTCAAGTGCTTGAAGAGCATATCTACCAAAACAAATACAATTGCCTCGGTAGGATTTTCCCTTCAT
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| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGATAACAGTGGAGCTCGAAAATTGATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATCAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAAGTCTTATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAA
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPDNSGARKLMCIRVIGAASNQRYARIGDVIVAVIKDAVPQMPLERSESLMGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW |
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| Function | 30S ribosomal protein S8, chloroplastic [UniProtKB/Swiss-Prot:P0C494] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0227000 | OsMH63_04T0227000-mRNA-1 | Chr04 | 14746893 | 14748289 | - | maker | ||
| CDS seq | ATGAAGGGAAAATCCTACCGAGGCAATTGTATTTGTTTTGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATTACGGCGAGGCAGATAGAAGCAGGACGAAGAGCAATGACACGATATGCACGTCGTGGTGGAAAAATCTGGGTACGTATATTTCCCGACAAACCGGTTACAATAAGACCGACCGAAACACGTATGGGTTCGGGAAAGGGATCCCCCGAATATTGGGTAGCCGTTGTTAAACCAGATAACAGTGGAGCTCGAAAATTGATGTGTATTCGAGTCATAGGAGCTGCTAGTAATCAGCGATATGCTCGTATTGGTGATGTTATTGTTGCTGTAATCAAAGACGCAGTGCCCCAAATGCCTCTAGAAAGATCCGAAAGTCTTATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAA
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| Protein seq | MKGKSYRGNCICFGRYALQALEPTWITARQIEAGRRAMTRYARRGGKIWVRIFPDKPVTIRPTETRMGSGKGSPEYWVAVVKPDNSGARKLMCIRVIGAASNQRYARIGDVIVAVIKDAVPQMPLERSESLMGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 616.3807675 | 329.1249695 | 270.5755005 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16832 | RBH | 26.151880 | 24.657171 | 7.468051 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027740 | SBH | 0.970086 | 3.697005 | 7.875658 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027480 | SBH | 1.136841 | 0.000000 | 2.500653 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027550 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027570 | SBH | 0.580846 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007750 | RBH | 414.002625 | 192.582275 | 1194.498901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0431900 | RBH | 5.5447525 | 5.5190415 | 4.119681 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007470 | RBH | 37.755905 | 5.577140 | 41.794212 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227500 | RBH | 778.5061645 | 178.1831285 | 159.061943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027410 | SBH | 35.459846 | 135.836227 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027500 | SBH | 176.058960 | 161.992783 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0013020 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007870 | RBH | 26.043190 | 59.121384 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027190 | SBH | 3.707968 | 6.750974 | 11.783454 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027190 | SBH | 41.668495 | 166.531158 | 151.459686 |
