Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16832 | OGI:03070620 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9157779-9158189 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAA
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| CDS seq | ATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAA
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| Protein seq | MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW |
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| Function | 30S ribosomal protein S8, chloroplastic [UniProtKB/Swiss-Prot:P0C494] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16832 | LOC_Os04g16832.1 | Chr04 | 9157779 | 9158189 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCAAGGACACTATTGCTGATTTACTAACCTCTATAAGAAACGCGGACATGAATAAAAAAGGAACTGTTCGGGTAGTATCTACAAATATTACCGAAAACATTGTTAAAATACTTCTACGAGAGGGTTTTATTGAAAGTGTTCGGAAACATCAGGAAAGTAACAGATATTTCTTGGTTTCAACTTTGCGACATCAAAAGAGAAAGACTAGAAAGGGAATATATAGAACTAGAACCTTTTTAAAGCGTATCAGCCGACCTGGCTTACGAATTTATGCCAACTATCAAGGAATTCCTAAGGTTTTGGGCGGAATGGGAATTGCTATTCTTTCTACTTCTCGAGGTATAATGACAGATCGAGAAGCTCGACTAAACAGAATTGGGGGAGAAGTCTTATGTTATATATGGTAA
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| Protein seq | MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRKHQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 26.151880 | 24.657171 | 7.468051 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15278 | RBH | 23.530579 | 22.044981 | 7.574603 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027740 | RBH | 0.970086 | 3.697005 | 7.875658 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035890 | SBH | 13.145954 | 26.207108 | 47.520508 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0007670 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027570 | SBH | 0.580846 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027340 | RBH | 23.498585 | 21.783194 | 64.311920 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0227000 | RBH | 616.3807675 | 329.1249695 | 270.5755005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027110 | SBH | 1.268716 | 0.000000 | 1.241995 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0550200 | SBH | 467.010437 | 113.2591095 | 105.99263 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007650 | RBH | 1.013970 | 0.452268 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027410 | SBH | 35.459846 | 135.836227 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027500 | SBH | 176.058960 | 161.992783 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027200 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027190 | SBH | 3.707968 | 6.750974 | 11.783454 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
