Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0039900 | OGI:04007720 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:2543125-2545685 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACCACTCATTCCATCAACTCTCTCTCTCTCTCGCGGTTCCCTCCGGCTCCCTCCCCTCCGCTTCCTTCCTTCCGGTGGAGGCGCAAGCGAAGGGCGTCACCATTGCCGGATCCACCGCCCCCATGCCACCCCACTGCTGCCGACGCCACCCTCCTCTCTAGGCGCACCACTGTCGATGCCCATCCACTCCATCGGATCTAGGAGGGAAGCAAGAGGAGAGGGAGGGGAGAGGTCGTGCTGCCTCGTCCGCGCTCTGCCGGCGGTCCCCCTCCGGCCATGCAGGGAGGGCAGGAAGGGGAGGGGAGGGGAGATAGAAGGAGAGGGAGGGGAGTGGCCGCGCACGCTGCCGTCGAGAGGGAGGCAGCCATCAGGTTTATACCATGTTCGCTAACGGTATGTAAATAGGTTCACCTAATTTGTCATTGTTTATAGAATCAACTGATTAAAAAGATAGATCAGGTTAGCTTCGAACGTGAGCTATAAGCCTGTTGAGCTAATGAAATGTAAAGCACATGCATAGACGCTGATTAAATGTAAAGCACATGCATAAACTACACTACCACTAAGTTCAGATCTTGTCCCGTGTTCTTCTTTCAGTTGTAGCTTCCAAGCTGTGCATATCTCAGGCTTAGTGTCCGTCAGTGATCAACTGCAAGGCGCCGCATACTAGCCAGCAGATTCCAAGAGCGTTCGGTACGCCCTGTCTATTTCACGTAATTTATCTGGTTTTGTGTCCTTGATTTATATGGTTTTTTTTTTCATTGATATTAATTCTTGCTCAACTAACACATGTGTTAGCAGCAGACGATGCCTGGATGGATGGTTCGCACGGTGTTCTTGCTCAATTCATGGGTAATCCGGACGTTGGTAGTATTCAGCTTCGCAGCGCATGTCACCATCGTCTTCATGGCAGGAGTCCGCCGTCATAAGGCTATCGGCTTGCCGATAGCCATCCTGTGGGCGGCGAACCAGCTGGGCCGGTCGGCCGCGACGTACGCGCTCAGCAAGCTCGCCCTCGGTAGCACGCCGCAGGAGCTGCAGCTGGTGACGCTCTGGGGGGCGTTCCTGCTGCTCCATGCCGCTGGTCCGGACAACATCACCGCCTACTCCTTGGAGGACAATGTTCTGTCGACGCGCCAGAAGGTAGAAATGATCTTGCAGGTATCAGGAGCAGCATTTGCCATGTACAAGAATATAGTCATCAGAAGCGGGTCCGGTACGATGGTCTGGGTCTCCTCTTTCATGTTCATCATGGGCATTTTTAAGTATTGGGAGAGGGCGAAAGCTATGCAGCTCGCCAACCTAGAAAACTTGCGAAGCTCAATCAAGAAGAAGGAGACAAGGAGACGACGAAGCTTGAGAAATATTAGGCGTCCAAGCAGTTCAAAGCATGATAATGACAAGGAGGCACTGCTGGTTGCTCATGGCCTGCTCGACATCACCAAAGGCACCTTCGTCGATTCTTCAGTCAACGAGTTGGTATCAGAGCGAGTTCTCACCCCCTTCCTGATGAGCTCTCTTCTGCTCATTACTAGTGACATTGCCAGAACGATTCTTCTGCGCAGTAGTAATTTGGAGCTCAACCTCCATCCCTCGAGCCTCCTCAACTGCATTGAGGTATATAGTAGGCGGGTTTCTTCCCATCACTTCTCTATACCGAGCATTGAGCCCTCGAAAGAACTTCCTAGCCTTCTCACGCTCATCACTTGCCACGCTAGGCACAAAGCGTACAATACTGCTGAACTCCCGTTCATACTCATCAACAGTCTTGCTCCCCTGTTGGATATTGTTTAACTCATCACTCATCTTGTCCCTAAATGATTCTGGATAATACTTAGCTCTGAACTGCTGAAGAAAAACTTCCCAAGTAATAGCACCACGATCAGGGTTCCACGCTTCAACAACTCCATCCCACCAAATGTCCGCCTGACCAGTCAACTGAAAAGGCATGAAAGTAACCTTCTCCTTAGGAGTCATTCTTGATCCCCTCATATACTTCTCCATCTTGCGTAACCAGTCTGCAGCATTAACGGGAGTACCAGACCCATCAAATGTGTCTAAGCGCATGGATGTCCATCTAGTGAGTGTCATCCCCCGAACAGCTCGAGGAGCATCATCAGAGACAGCAGCTGAGTGGCTACCACCCTCCTCCTCTTCCATGTGCTCATCCTCCATCTGGTTCGAGGATGCTGCCTCATTATGGCGACCTCTACCACGACCTCTTCCACGGCCTCCAGCACGGCCCCTACCACGACCTCCACGATTCGGAATAGGGGATTCAGCAACCGAGTTGTTCCCAACCTCTTCATTATCCTGAGTATTTTCAACTTCTTCATTATGGTGGCCCCTACCACGACCTCTACCTCCGCTTCTCCCGCGGCCTCTGTTAGCCAACCAAACACTCACTCTAGGCGGCATAGCTATATCAAACACAAGCATTTACACGTCATTAGTTTAACAATAGGTTAGACAATGGCATGCAAGGAAACACAATCATACACATATATATGCAGCAGAAACATAAATGCTAGGAATGAACCATGCTCCCATTCCTATTGTG
More
|
||||||||||
| CDS seq | ATGCCTGGATGGATGGTTCGCACGGTGTTCTTGCTCAATTCATGGGTAATCCGGACGTTGGTAGTATTCAGCTTCGCAGCGCATGTCACCATCGTCTTCATGGCAGGAGTCCGCCGTCATAAGGCTATCGGCTTGCCGATAGCCATCCTGTGGGCGGCGAACCAGCTGGGCCGGTCGGCCGCGACGTACGCGCTCAGCAAGCTCGCCCTCGGTAGCACGCCGCAGGAGCTGCAGCTGGTGACGCTCTGGGGGGCGTTCCTGCTGCTCCATGCCGCTGGTCCGGACAACATCACCGCCTACTCCTTGGAGGACAATGTTCTGTCGACGCGCCAGAAGGTAGAAATGATCTTGCAGGTATCAGGAGCAGCATTTGCCATGTACAAGAATATAGTCATCAGAAGCGGGTCCGGTACGATGGTCTGGGTCTCCTCTTTCATGTTCATCATGGGCATTTTTAAGTATTGGGAGAGGGCGAAAGCTATGCAGCTCGCCAACCTAGAAAACTTGCGAAGCTCAATCAAGAAGAAGGAGACAAGGAGACGACGAAGCTTGAGAAATATTAGGCGTCCAAGCAGTTCAAAGCATGATAATGACAAGGAGGCACTGCTGGTTGCTCATGGCCTGCTCGACATCACCAAAGGCACCTTCGTCGATTCTTCAGTCAACGAGTTGGTATCAGAGCGAGTTCTCACCCCCTTCCTGATGAGCTCTCTTCTGCTCATTACTAGTGACATTGCCAGAACGATTCTTCTGCGCAGTAGTAATTTGGAGCTCAACCTCCATCCCTCGAGCCTCCTCAACTGCATTGAGGTATATAGTAGGCGGGTTTCTTCCCATCACTTCTCTATACCGAGCATTGAGCCCTCGAAAGAACTTCCTAGCCTTCTCACGCTCATCACTTGCCACGCTAGGCACAAAGCGTACAATACTGCTGAACTCCCGTTCATACTCATCAACAGTCTTGCTCCCCTGTTGGATATTGTTTAA
More
|
||||||||||
| Protein seq | MPGWMVRTVFLLNSWVIRTLVVFSFAAHVTIVFMAGVRRHKAIGLPIAILWAANQLGRSAATYALSKLALGSTPQELQLVTLWGAFLLLHAAGPDNITAYSLEDNVLSTRQKVEMILQVSGAAFAMYKNIVIRSGSGTMVWVSSFMFIMGIFKYWERAKAMQLANLENLRSSIKKKETRRRRSLRNIRRPSSSKHDNDKEALLVAHGLLDITKGTFVDSSVNELVSERVLTPFLMSSLLLITSDIARTILLRSSNLELNLHPSSLLNCIEVYSRRVSSHHFSIPSIEPSKELPSLLTLITCHARHKAYNTAELPFILINSLAPLLDIV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0039900 | OsMH63_04T0039900.1 | Chr04 | 2543125 | 2545685 | + | maker | ||
| CDS seq | ATGCCTGGATGGATGGTTCGCACGGTGTTCTTGCTCAATTCATGGGTAATCCGGACGTTGGTAGTATTCAGCTTCGCAGCGCATGTCACCATCGTCTTCATGGCAGGAGTCCGCCGTCATAAGGCTATCGGCTTGCCGATAGCCATCCTGTGGGCGGCGAACCAGCTGGGCCGGTCGGCCGCGACGTACGCGCTCAGCAAGCTCGCCCTCGGTAGCACGCCGCAGGAGCTGCAGCTGGTGACGCTCTGGGGGGCGTTCCTGCTGCTCCATGCCGCTGGTCCGGACAACATCACCGCCTACTCCTTGGAGGACAATGTTCTGTCGACGCGCCAGAAGGTAGAAATGATCTTGCAGGTATCAGGAGCAGCATTTGCCATGTACAAGAATATAGTCATCAGAAGCGGGTCCGGTACGATGGTCTGGGTCTCCTCTTTCATGTTCATCATGGGCATTTTTAAGTATTGGGAGAGGGCGAAAGCTATGCAGCTCGCCAACCTAGAAAACTTGCGAAGCTCAATCAAGAAGAAGGAGACAAGGAGACGACGAAGCTTGAGAAATATTAGGCGTCCAAGCAGTTCAAAGCATGATAATGACAAGGAGGCACTGCTGGTTGCTCATGGCCTGCTCGACATCACCAAAGGCACCTTCGTCGATTCTTCAGTCAACGAGTTGGTATCAGAGCGAGTTCTCACCCCCTTCCTGATGAGCTCTCTTCTGCTCATTACTAGTGACATTGCCAGAACGATTCTTCTGCGCAGTAGTAATTTGGAGCTCAACCTCCATCCCTCGAGCCTCCTCAACTGCATTGAGGTATATAGTAGGCGGGTTTCTTCCCATCACTTCTCTATACCGAGCATTGAGCCCTCGAAAGAACTTCCTAGCCTTCTCACGCTCATCACTTGCCACGCTAGGCACAAAGCGTACAATACTGCTGAACTCCCGTTCATACTCATCAACAGTCTTGCTCCCCTGTTGGATATTGTTTAA
More
|
|||||||
| Protein seq | MPGWMVRTVFLLNSWVIRTLVVFSFAAHVTIVFMAGVRRHKAIGLPIAILWAANQLGRSAATYALSKLALGSTPQELQLVTLWGAFLLLHAAGPDNITAYSLEDNVLSTRQKVEMILQVSGAAFAMYKNIVIRSGSGTMVWVSSFMFIMGIFKYWERAKAMQLANLENLRSSIKKKETRRRRSLRNIRRPSSSKHDNDKEALLVAHGLLDITKGTFVDSSVNELVSERVLTPFLMSSLLLITSDIARTILLRSSNLELNLHPSSLLNCIEVYSRRVSSHHFSIPSIEPSKELPSLLTLITCHARHKAYNTAELPFILINSLAPLLDIV
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0039900 | OsMH63_04T0039900.2 | Chr04 | 2543628 | 2544495 | + | maker | ||
| CDS seq | ATGCCTGGATGGATGGTTCGCACGGTGTTCTTGCTCAATTCATGGGTAATCCGGACGTTGGTAGTATTCAGCTTCGCAGCGCATGTCACCATCGTCTTCATGGCAGGAGTCCGCCGTCATAAGGCTATCGGCTTGCCGATAGCCATCCTGTGGGCGGCGAACCAGCTGGGCCGGTCGGCCGCGACGTACGCGCTCAGCAAGCTCGCCCTCGGTAGCACGCCGCAGGAGCTGCAGCTGGTGACGCTCTGGGGGGCGTTCCTGCTGCTCCATGCCGCTGGTCCGGACAACATCACCGCCTACTCCTTGGAGGACAATGTTCTGTCGACGCGCCAGAAGGTAGAAATGATCTTGCAGGTATCAGGAGCAGCATTTGCCATGTACAAGAATATAGTCATCAGAAGCGGGTCCGTATTGGGAGAGGGCGAAAGCTATGCAGCTCGCCAACCTAGAAAACTTGCGAAGCTCAATCAAGAAGAAGGAGACAAGGAGACGACGAAGCTTGAGAAATATTAG
More
|
|||||||
| Protein seq | MPGWMVRTVFLLNSWVIRTLVVFSFAAHVTIVFMAGVRRHKAIGLPIAILWAANQLGRSAATYALSKLALGSTPQELQLVTLWGAFLLLHAAGPDNITAYSLEDNVLSTRQKVEMILQVSGAAFAMYKNIVIRSGSVLGEGESYAARQPRKLAKLNQEEGDKETTKLEKY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.013826 | 0.0049145 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0139100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g06590 | SBH | 0.000000 | 0.158983 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0147200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002030 | SBH | 0.0 | 0.463664 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001610 | RBH | 0.0 | 0.984307 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001670 | SBH | 0.0 | 0.080486 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001650 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002110 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0033900 | SBH | 0.0085945 | 0.0097185 | 0.054203 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001630 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001880 | RBH | 0.0 | 1.321534 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001710 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001710 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001730 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001700 | SBH | 0.0 | 0.0 | 0.343356 |
