Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0001630 | OGI:04007720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:2474756-2477026 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtagacaggaatgcttgtgtcgttgcttgctgatttcttttctgtcgttggctttttgactcgaagtatgcgagcgtgttcagcaaggatccacacaacggtagtgaagtcaccaccacgggcaagctgcttggcatgggaatccctagtgcatcggatggatacgttgatcagctgacgcgcccactccctgatgatggcatccatcctcaccgcgattgatgaacgatctttctcaactagttccatcaaaaacggaaactgcctgtcaattttttcctttagttttggggcaccatcatgaatagaagtaattctccctagcagaaacttggctagtaaagctccctccgacagaacattactcgtgtcgtaaagaacgctcagaaaacccttttctggcttcgactcgtcttttttgacgaattgcccctcctccctgtccatggcaatcaggatcttggcaagacgtttctctctcgtcgtggaggagctagtacctgaggaaggatcactacctcctttctccttccatattctggcaagagcagcactcacagcttcataccggctgctgaggacgaggcctggtaacatgctgggtcgcaccgccacgaggaacatcatgtaatctgacaacgccttgatcgccttcacctgctgttgtgtggtccactctgccgacgatgcttcaatttctaattgcggtgacaagagaacgatgtcagtggcgatgtgcaagataagaatggtctcttgtaaatcaggagtgaatttcagggcaatgtccagttcctgatgagcatgcgtatgttgttcttccagtgccaccgccagtttggatCccccagcatccacctcatccctcaacttcactggtcgtcgttgtgggaagggcttcttcattaccttccaaatagagttgaacaactcgtccctgaaatctcttgaatcaatatgattgcccctcacgcgctggtattcgtactccatccagttctcctccggtgctaaccgcttgaacatgccgctcttccagttcttggtccttgcctcgctctcatggcgggtgcactcgtgcaacaagttgtactgcccaatggtttgtgaccacatcctgtacctagttggtttcttgttattgtcaagcaaccgaaacagattcagatcagagacgatgaggcgacggatcagtcgccatttccctgagcacagaagagcatgatgaagccacgatcgtggcctctcatccaggaacgagtagaaccatgtcgacgccaccgctcggagaagccatttgatgtccaggacgaccatgccggccagcaggacataggtgatcacgacgtcggccgtcgcctgaccttccttgctgtggagccaaaacagcacgaatgccgccgtcgcggcggtcggagaggcgaaacggaggatgtaacctttccatgagtgcaccacggccgccttggtgtagatgaggtcgtacatgagggagagctccatgttgaccaccgtgtacagcttctcatcccatgaatcagagagcgcttcttgttcgtccgctttattttggtccagaaaatcgatgaaggcgtccttggtgatgtctagcatgtcatgagcagccagaaggatttgctcatcattcggctccctgcctccacgtctagcgatctggaggctgtttcgtactgattttgtactactgatgttcttcatcttctttctcgagttttgcattttcttcaggttgccccgcatcagagcttggtatgctccctcccaatacttgccgatggccatcaacaagacgaccgaggagaccccgagcatggcgtcaccgccattgctgatgatgaaggagatgttcttcaccaggaaagggaatggtgacgccgatccaagcagttgataccacacgtcagcctgctgccgcctcgagagaacggtgtcctccaaggagtaggcggtgaagttgtcaggcatgccggcgtgcagcagcatgaacgacacccagagcgtcaccagctgctctttctgtggcgtgctgccgactgacagcgtgcccagcgcagtgaccggagcccaacgggcaaactggttcgctacccacaggatgaacatccgcacgccggtcggttgatggcggcggagtccggcgagcaagacgggggcgagatgagcaatgaagctgaagattaccaatccccggatcgacgagatatacagctgtaggatgagcaggatggtagtgatccatccaggcat
More
|
||||||||||
| CDS seq | atgcctggatggatcactaccatcctgctcatcctacagctgtatatctcgtcgatccggggattggtaatcttcagcttcattgctcatctcgcccccgtcttgctcgccggactccgccgccatcaaccgaccggcgtgcggatgttcatcctgtgggtagcgaaccagtttgcccgttgggctccggtcactgcgctgggcacgctgtcagtcggcagcacgccacagaaagagcagctggtgacgctctgggtgtcgttcatgctgctgcacgccggcatgcctgacaacttcaccgcctactccttggaggacaccgttctctcgaggcggcagcaggctgacgtgtggtatcaactgcttggatcggcgtcaccattccctttcctggtgaagaacatctccttcatcatcagcaatggcggtgacgccatgctcggggtctcctcggtcgtcttgttgatggccatcggcaagtattgggagggagcataccaagctctgatgcggggcaacctgaagaaaatgcaaaactcgagaaagaagatgaagaacatcagtagtacaaaatcagtacgaaacagcctccagatcgctagacgtggaggcagggagccgaatgatgagcaaatccttctggctgctcatgacatgctagacatcaccaaggacgccttcatcgattttctggaccaaaataaagcggacgaacaagaagcgctctctgattcatgggatgagaagctgtacacggtggtcaacatggagctctccctcatgtacgacctcatctacaccaaggcggccgtggtgcactcatggaaaggttacatcctccgtttcgcctctccgaccgccgcgacggcggcattcgtgctgttttggctccacagcaaggaaggtcaggcgacggccgacgtcgtgatcacctatgtcctgctggccggcatggtcgtcctggacatcaaatggcttctccgagcggtggcgtcgacatggttctactcgttcctggatgagaggccacgatcgtggcttcatcatgctcttctgtgctcagggaaatggcgactgatccgtcgcctcatcgtctctgatctgaatctgtttcggttgcttgacaataacaagaaaccaactaggtacaggatgtggtcacaaaccattgggcagtacaacttgttgcacgagtgcacccgccatgagagcgaggcaaggaccaagaactggaagagcggcatgttcaagcggttagcaccggaggagaactggatggagtacgaataccagcgcgtgaggggcaatcatattgattcaagagatttcagggacgagttgttcaactctatttggaaggtaatgaagaagcccttcccacaacgacgaccagtgaagttgagggatgaggtggatgctggggGatccaaactggcggtggcactggaagaacaacatacgcatgctcatcaggaactggacattgccctgaaattcactcctgatttacaagagaccattcttatcttgcacatcgccactgacatcgttctcttgtcaccgcaattagaaattgaagcatcgtcggcagagtggaccacacaacagcaggtgaaggcgatcaaggcgttgtcagattacatgatgttcctcgtggcggtgcgacccagcatgttaccaggcctcgtcctcagcagccggtatgaagctgtgagtgctgctcttgccagaatatggaaggagaaaggaggtagtgatccttcctcaggtactagctcctccacgacgagagagaaacgtcttgccaagatcctgattgccatggacagggaggaggggcaattcgtcaaaaaagacgagtcgaagccagaaaagggttttctgagcgttctttacgacacgagtaatgttctgtcggagggagctttactagccaagtttctgctagggagaattacttctattcatgatggtgccccaaaactaaaggaaaaaattgacaggcagtttccgtttttgatggaactagttgagaaagatcgttcatcaatcgcggtgaggatggatgccatcatcagggagtgggcgcgtcagctgatcaacgtatccatccgatgcactagggattcccatgccaagcagcttgcccgtggtggtgacttcactaccgttgtgtggatccttgctgaacacgctcgcatacttcgagtcaaaaagccaacgacagaaaagaaatcagcaagcaacgacacaagcattcctgtctactga
More
|
||||||||||
| Protein seq | MPGWITTILLILQLYISSIRGLVIFSFIAHLAPVLLAGLRRHQPTGVRMFILWVANQFARWAPVTALGTLSVGSTPQKEQLVTLWVSFMLLHAGMPDNFTAYSLEDTVLSRRQQADVWYQLLGSASPFPFLVKNISFIISNGGDAMLGVSSVVLLMAIGKYWEGAYQALMRGNLKKMQNSRKKMKNISSTKSVRNSLQIARRGGREPNDEQILLAAHDMLDITKDAFIDFLDQNKADEQEALSDSWDEKLYTVVNMELSLMYDLIYTKAAVVHSWKGYILRFASPTAATAAFVLFWLHSKEGQATADVVITYVLLAGMVVLDIKWLLRAVASTWFYSFLDERPRSWLHHALLCSGKWRLIRRLIVSDLNLFRLLDNNKKPTRYRMWSQTIGQYNLLHECTRHESEARTKNWKSGMFKRLAPEENWMEYEYQRVRGNHIDSRDFRDELFNSIWKVMKKPFPQRRPVKLRDEVDAGGSKLAVALEEQHTHAHQELDIALKFTPDLQETILILHIATDIVLLSPQLEIEASSAEWTTQQQVKAIKALSDYMMFLVAVRPSMLPGLVLSSRYEAVSAALARIWKEKGGSDPSSGTSSSTTREKRLAKILIAMDREEGQFVKKDESKPEKGFLSVLYDTSNVLSEGALLAKFLLGRITSIHDGAPKLKEKIDRQFPFLMELVEKDRSSIAVRMDAIIREWARQLINVSIRCTRDSHAKQLARGGDFTTVVWILAEHARILRVKKPTTEKKSASNDTSIPVY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0001630 | OsLima_04g0001630.01 | Chr04 | 2474756 | 2477026 | - | NAM | ||
| CDS seq | atgcctggatggatcactaccatcctgctcatcctacagctgtatatctcgtcgatccggggattggtaatcttcagcttcattgctcatctcgcccccgtcttgctcgccggactccgccgccatcaaccgaccggcgtgcggatgttcatcctgtgggtagcgaaccagtttgcccgttgggctccggtcactgcgctgggcacgctgtcagtcggcagcacgccacagaaagagcagctggtgacgctctgggtgtcgttcatgctgctgcacgccggcatgcctgacaacttcaccgcctactccttggaggacaccgttctctcgaggcggcagcaggctgacgtgtggtatcaactgcttggatcggcgtcaccattccctttcctggtgaagaacatctccttcatcatcagcaatggcggtgacgccatgctcggggtctcctcggtcgtcttgttgatggccatcggcaagtattgggagggagcataccaagctctgatgcggggcaacctgaagaaaatgcaaaactcgagaaagaagatgaagaacatcagtagtacaaaatcagtacgaaacagcctccagatcgctagacgtggaggcagggagccgaatgatgagcaaatccttctggctgctcatgacatgctagacatcaccaaggacgccttcatcgattttctggaccaaaataaagcggacgaacaagaagcgctctctgattcatgggatgagaagctgtacacggtggtcaacatggagctctccctcatgtacgacctcatctacaccaaggcggccgtggtgcactcatggaaaggttacatcctccgtttcgcctctccgaccgccgcgacggcggcattcgtgctgttttggctccacagcaaggaaggtcaggcgacggccgacgtcgtgatcacctatgtcctgctggccggcatggtcgtcctggacatcaaatggcttctccgagcggtggcgtcgacatggttctactcgttcctggatgagaggccacgatcgtggcttcatcatgctcttctgtgctcagggaaatggcgactgatccgtcgcctcatcgtctctgatctgaatctgtttcggttgcttgacaataacaagaaaccaactaggtacaggatgtggtcacaaaccattgggcagtacaacttgttgcacgagtgcacccgccatgagagcgaggcaaggaccaagaactggaagagcggcatgttcaagcggttagcaccggaggagaactggatggagtacgaataccagcgcgtgaggggcaatcatattgattcaagagatttcagggacgagttgttcaactctatttggaaggtaatgaagaagcccttcccacaacgacgaccagtgaagttgagggatgaggtggatgctggggGatccaaactggcggtggcactggaagaacaacatacgcatgctcatcaggaactggacattgccctgaaattcactcctgatttacaagagaccattcttatcttgcacatcgccactgacatcgttctcttgtcaccgcaattagaaattgaagcatcgtcggcagagtggaccacacaacagcaggtgaaggcgatcaaggcgttgtcagattacatgatgttcctcgtggcggtgcgacccagcatgttaccaggcctcgtcctcagcagccggtatgaagctgtgagtgctgctcttgccagaatatggaaggagaaaggaggtagtgatccttcctcaggtactagctcctccacgacgagagagaaacgtcttgccaagatcctgattgccatggacagggaggaggggcaattcgtcaaaaaagacgagtcgaagccagaaaagggttttctgagcgttctttacgacacgagtaatgttctgtcggagggagctttactagccaagtttctgctagggagaattacttctattcatgatggtgccccaaaactaaaggaaaaaattgacaggcagtttccgtttttgatggaactagttgagaaagatcgttcatcaatcgcggtgaggatggatgccatcatcagggagtgggcgcgtcagctgatcaacgtatccatccgatgcactagggattcccatgccaagcagcttgcccgtggtggtgacttcactaccgttgtgtggatccttgctgaacacgctcgcatacttcgagtcaaaaagccaacgacagaaaagaaatcagcaagcaacgacacaagcattcctgtctactga
More
|
|||||||
| Protein seq | MPGWITTILLILQLYISSIRGLVIFSFIAHLAPVLLAGLRRHQPTGVRMFILWVANQFARWAPVTALGTLSVGSTPQKEQLVTLWVSFMLLHAGMPDNFTAYSLEDTVLSRRQQADVWYQLLGSASPFPFLVKNISFIISNGGDAMLGVSSVVLLMAIGKYWEGAYQALMRGNLKKMQNSRKKMKNISSTKSVRNSLQIARRGGREPNDEQILLAAHDMLDITKDAFIDFLDQNKADEQEALSDSWDEKLYTVVNMELSLMYDLIYTKAAVVHSWKGYILRFASPTAATAAFVLFWLHSKEGQATADVVITYVLLAGMVVLDIKWLLRAVASTWFYSFLDERPRSWLHHALLCSGKWRLIRRLIVSDLNLFRLLDNNKKPTRYRMWSQTIGQYNLLHECTRHESEARTKNWKSGMFKRLAPEENWMEYEYQRVRGNHIDSRDFRDELFNSIWKVMKKPFPQRRPVKLRDEVDAGGSKLAVALEEQHTHAHQELDIALKFTPDLQETILILHIATDIVLLSPQLEIEASSAEWTTQQQVKAIKALSDYMMFLVAVRPSMLPGLVLSSRYEAVSAALARIWKEKGGSDPSSGTSSSTTREKRLAKILIAMDREEGQFVKKDESKPEKGFLSVLYDTSNVLSEGALLAKFLLGRITSIHDGAPKLKEKIDRQFPFLMELVEKDRSSIAVRMDAIIREWARQLINVSIRCTRDSHAKQLARGGDFTTVVWILAEHARILRVKKPTTEKKSASNDTSIPVY
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0147200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g06300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0147200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002030 | SBH | 0.0 | 0.463664 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001610 | RBH | 0.0 | 0.984307 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001880 | RBH | 0.0 | 0.080254 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001890 | RBH | 0.0 | 5.498358 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0046700 | RBH | 0.0091635 | 0.6585215 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001990 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0033900 | SBH | 0.0085945 | 0.0097185 | 0.054203 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001930 | SBH | 0.0 | 0.029694 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002210 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001840 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001920 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002000 | RBH | 0.130381 | 1.847898 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001900 | RBH | 0.0 | 0.0 | 0.0 |
