Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_03G0368400 | OGI:01011440 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr03:23707451-23709040 | ||||||||
| Gene Symbol | OS-CAD | ||||||||||
| DNA seq | ATGCTGCTCCGGTGACGTCGAGGCATCTGCGAACGGCGGCCTCGATTCGCCGATTGCTCCTCCAGCATCCACTGAATTAAGGTCATTCTCTCTTCTTGATCCCTGCTATAGTTCGTGTATGTTCTTCCGTGGAATGTGCTTGGTTTGAACAATTTGGGGGCTGAGATGAACTAGGGTTTTGATGCCACCAACACTGACAACTGCAGATGAACTAGAGTTAGTATTCCGTCGGTGTTCTTGTAGAGACAGCTACAGCTTCCTCTTCTTGTTGTTCTTCTTGTCCTTCCCTCCACTTGGGCCTGGCCCCTCATCGATTGGCCAACAAAAGGTAGTAATGGTGTCCCTCCATTACTGCTGTTCTGTAAGGTTATGATGAGCTACCCACTGATGTGGAGCAACCGGCGGCGTCTGCAGCTGTTACTGTTGTGTTATTCATCGATGGGAGGATCGTGCGTAGAATTGATGTTGCTGCTGCCGGCCTGCCGTCGTGCTTTATGTTCTCCATTATCTTGCATATTGCATTAGAATGATGGTGAGATGTGGGTCTGGGGTCTGGGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTCAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCAATTCATTCTTTTCTCGTCTAATTGGGCGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGTTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAAGTGAGTTCTTCACACATGAGGTATTTAGCATAATTCAGAAAGAGGTGCTAGCTGCCAGGGACCGTTGCCTTATTGACAATGTGCAACAAGAGGGCTAGGTCAAAATCATTGATATCATTGAAGAATCCAGGAAGCCAAGAGTTGTGCGTTATGATAGACAGACAATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGCCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCACCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGA
More
|
||||||||||
| CDS seq | ATGCTGCTCCGAGACAGCTACAGCTTCCTCTTCTTGTTGTTCTTCTTGTCCTTCCCTCCACTTGGGCCTGGCCCCTCATCGATTGGCCAACAAAAGAATGATGGTGAGATGTGGGTCTGGGGTCTGGGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTCAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCAATTCATTCTTTTCTCGTCTAATTGGGCGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGTTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAAGTGAGTTCTTCACACATGAGGTCAAAATCATTGATATCATTGAAGAATCCAGGAAGCCAAGAGTTGTGCGTTATGATAGACAGACAATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGCCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCACCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGA
More
|
||||||||||
| Protein seq | MLLRDSYSFLFLLFFLSFPPLGPGPSSIGQQKNDGEMWVWGLGFSTKFDQRRSWVPAYFSDIPLSGLLRTTSRSESANSFFSRLIGRKLALVEFWLRFDAALEEQRHKELEEDNITLHTIRNLKTEWVIEKHASEFFTHEVKIIDIIEESRKPRVVRYDRQTMVATCTCMLFETHGIPCRHLIPVLRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKIKKKERVPRRCKKCKQVVLHDSRNCPNKEPQQ |
||||||||||
| Function | Protein FAR-RED ELONGATED HYPOCOTYL 3 [UniProtKB/Swiss-Prot:Q9LIE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_03G0368400 | OsMH63_03T0368400.1 | Chr03 | 23707451 | 23709040 | + | maker | ||
| CDS seq | ATGCTGCTCCGAGACAGCTACAGCTTCCTCTTCTTGTTGTTCTTCTTGTCCTTCCCTCCACTTGGGCCTGGCCCCTCATCGATTGGCCAACAAAAGAATGATGGTGAGATGTGGGTCTGGGGTCTGGGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTCAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCAATTCATTCTTTTCTCGTCTAATTGGGCGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGTTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAAGTGAGTTCTTCACACATGAGGTCAAAATCATTGATATCATTGAAGAATCCAGGAAGCCAAGAGTTGTGCGTTATGATAGACAGACAATGGTTGCAACGTGCACATGTATGCTATTTGAAACTCATGGTATACCATGCCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTAGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTTATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCACCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGATAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCGTGCTGCACGATTCGCGCAACTGTCCTAACAAAGAACCACAACAGTGA
More
|
|||||||
| Protein seq | MLLRDSYSFLFLLFFLSFPPLGPGPSSIGQQKNDGEMWVWGLGFSTKFDQRRSWVPAYFSDIPLSGLLRTTSRSESANSFFSRLIGRKLALVEFWLRFDAALEEQRHKELEEDNITLHTIRNLKTEWVIEKHASEFFTHEVKIIDIIEESRKPRVVRYDRQTMVATCTCMLFETHGIPCRHLIPVLRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKIKKKERVPRRCKKCKQVVLHDSRNCPNKEPQQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.2400875 | 1.723231 | 3.133729 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0581100 | RBH | 0.400346 | 0.773022 | 1.942718 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38440 | RBH | 0.270557 | 0.519579 | 0.499916 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0581100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0370900 | RBH | 2.055344 | 2.741092 | 9.953044 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
